jgi.p|Nanoce1779_2|641689, mRNA_8346 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|641689
Unique NamemRNA_8346
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length705
Alignment locationscaffold_23:429511..430728 -

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Properties
Property NameValue
TranscriptId641775
TrackFilteredModels2
ProteinId641689
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:429511..430728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641689gene_8346Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641689mRNA_8346-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8346CDS_8346Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8346 ID=mRNA_8346|Name=jgi.p|Nanoce1779_2|641689|organism=Nannochloropsis oceanica|type=mRNA|length=705bp
ATGGTACTCACCACCACCACCGCCGACGGCCATCGTACCCTTGGTGAGGT
TCGCATGGCGGGTTCCCTTTTGGCTGCACTGATAAAGGAAACGGGGCGAA
GAGCAAAAACACACTCGGAGGGGTTGCTGCTGGGGGCGACGCAAGCCTTG
ACTGTGGCAGTTACTGACGACGCCACGGAAACCACGGAGCGGGCATTGTT
GCAGATGGATGTGACAGGTTATGTGTGCACGGGGTGCCGGGATTCGTTTT
ATCAGCCTTTGACAGGAGTGGTGAAACAGGAAAAGGTGGCGGAGGCGACG
GCGGGGACGAATGGGGAGCATAGCGTGGTTGGCTGGTTCGTTGCCCGACA
TTGCGTCACCACCAAGCCCAGCCTACGGGACCTGGCCATCTTGAGACAGC
TGGGGGAATACGTCAATCATCAACGAAAAGGGCAGAAAGGAGAGAATGGC
GGGATAGAAGAGGACAAGCAGCAACAAGAACAACAAGAAGGAGGACGGCT
TTTCCCGCCCCGCCTTCCACTCGCTCCTCGTCAAGAGTATGAACTGTACG
TGGATCAAGTTTTAGCGCGATTGCACGCCTTGGTGGATGACATTCAGACA
GAAGAGATGGCTTTGAGTGCGTTGAAAGAAAAATGGCGGCAGATGCGGCG
AGTCCTGCGCGAGGAGAAGAGGGCGGAGGGGGAGAAGGAAGGGAAGGAGG
GGTGA
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protein sequence of jgi.p|Nanoce1779_2|641689

>mRNA_8346-protein ID=mRNA_8346-protein|Name=jgi.p|Nanoce1779_2|641689|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MVLTTTTADGHRTLGEVRMAGSLLAALIKETGRRAKTHSEGLLLGATQAL
TVAVTDDATETTERALLQMDVTGYVCTGCRDSFYQPLTGVVKQEKVAEAT
AGTNGEHSVVGWFVARHCVTTKPSLRDLAILRQLGEYVNHQRKGQKGENG
GIEEDKQQQEQQEGGRLFPPRLPLAPRQEYELYVDQVLARLHALVDDIQT
EEMALSALKEKWRQMRRVLREEKRAEGEKEGKEG*
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mRNA from alignment at scaffold_23:429511..430728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8346 ID=mRNA_8346|Name=jgi.p|Nanoce1779_2|641689|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp|location=Sequence derived from alignment at scaffold_23:429511..430728- (Nannochloropsis oceanica)
ATGGTACTCACCACCACCACCGCCGACGGCCATCGTACCCTTGGTGAGGT
TCGCATGGCGGGTTCCCTTTTGGCTGCACTGATAAAGGAAACGGGGCGAA
GAGCAAAAACACACTCGGAGGGGTTGCTGCTGGGGGCGACGCAAGCCTTG
ACTGTGGCAGTTACTGACGACGCCACGGAAACCACGGAGCGGGCATTGTT
GCAGATGGATGTGACAGGTTATGTGTGCACGGGGTGCCGGGATTCGTTTT
ATCAGCCTTTGACAGGAGTGGTGAAACAGGAAAAGGTGGCGGAGGCGACG
GCGGGGACGAATGGGGAGCATGTACGTAGACGTGCAAGAGGAACGAGGGG
AGAAAGAGGTGTGATAATGTGAAAAATGGGCAAGAACTACATCGAATTAA
CGCGTTTTTGGCCCAAAACTTGTTTCTTATTAAATCCTGCCACACCCATC
CCTCCCTCTATCCCTCACTCCCTTCCTCAGAGCGTGGTTGGCTGGTTCGT
TGCCCGACATTGCGTCACCACCAAGCCCAGCCTACGGGACCTGGCCATCT
TGAGACAGCTGGGGGAATACGTCAATCATCAACGAAAAGGGCAGAAAGGA
GAGAATGGCGGGATAGAAGAGGACAAGCAGCAACAAGAACAACAAGAAGG
AGGGTGCGGAGGAGGCGGCGGAAGCACTCTCCCATCTCCCACCCCCTGGA
CCCCAGTAGTTCTCATCGTCTTCTCCCTCGACCTCCAACCCACATCCGAA
ACCCAAGGCGTTTCCTATGCCTGCCACTATCTGCCCCCCCCCCTCTCTCC
ACGGCCCTCAGACGGCTTTTCCCGCCCCGCCTTCCACTCGCTCCTCGTCA
AGGTCCGTGCTATCTCCCACGACTGCACCGCTGAATACCAAACTTACACG
GGAGGATATCATTCCTCCCTCCTTTCTCCCCCGTCCTCCTCCTCTTCCTC
CTCCTCTACCACCACCACCACCGGTCTGGCCGGGATGCCCTCCATGCGTC
CTGGCTTAAGGGAGCTGGCAAGGACTGTCCCTCCTCCTCACGTCACAGAG
TATGAACTGTACGTGGATCAAGTTTTAGCGCGATTGCACGCCTTGGTGGA
TGACATTCAGACAGAAGAGATGGCTTTGAGTGCGTTGAAAGAAAAATGGC
GGCAGATGCGGCGAGTCCTGCGCGAGGAGAAGAGGGCGGAGGGGGAGAAG
GAAGGGAAGGAGGGGTGA
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Coding sequence (CDS) from alignment at scaffold_23:429511..430728-

>mRNA_8346 ID=mRNA_8346|Name=jgi.p|Nanoce1779_2|641689|organism=Nannochloropsis oceanica|type=CDS|length=2820bp|location=Sequence derived from alignment at scaffold_23:429511..430728- (Nannochloropsis oceanica)
AGTATGAACTGTACGTGGATCAAGTTTTAGCGCGATTGCACGCCTTGGTG
GATGACATTCAGACAGAAGAGATGGCTTTGAGTGCGTTGAAAGAAAAATG
GCGGCAGATGCGGCGAGTCCTGCGCGAGGAGAAGAGGGCGGAGGGGGAGA
AGGAAGGGAAGGAGGGGTGAACGGCTTTTCCCGCCCCGCCTTCCACTCGC
TCCTCGTCAAGAGCGTGGTTGGCTGGTTCGTTGCCCGACATTGCGTCACC
ACCAAGCCCAGCCTACGGGACCTGGCCATCTTGAGACAGCTGGGGGAATA
CGTCAATCATCAACGAAAAGGGCAGAAAGGAGAGAATGGCGGGATAGAAG
AGGACAAGCAGCAACAAGAACAACAAGAAGGAGGATGGTACTCACCACCA
CCACCGCCGACGGCCATCGTACCCTTGGTGAGGTTCGCATGGCGGGTTCC
CTTTTGGCTGCACTGATAAAGGAAACGGGGCGAAGAGCAAAAACACACTC
GGAGGGGTTGCTGCTGGGGGCGACGCAAGCCTTGACTGTGGCAGTTACTG
ACGACGCCACGGAAACCACGGAGCGGGCATTGTTGCAGATGGATGTGACA
GGTTATGTGTGCACGGGGTGCCGGGATTCGTTTTATCAGCCTTTGACAGG
AGTGGTGAAACAGGAAAAGGTGGCGGAGGCGACGGCGGGGACGAATGGGG
AGCATAGTATGAACTGTACGTGGATCAAGTTTTAGCGCGATTGCACGCCT
TGGTGGATGACATTCAGACAGAAGAGATGGCTTTGAGTGCGTTGAAAGAA
AAATGGCGGCAGATGCGGCGAGTCCTGCGCGAGGAGAAGAGGGCGGAGGG
GGAGAAGGAAGGGAAGGAGGGGTGAACGGCTTTTCCCGCCCCGCCTTCCA
CTCGCTCCTCGTCAAGAGCGTGGTTGGCTGGTTCGTTGCCCGACATTGCG
TCACCACCAAGCCCAGCCTACGGGACCTGGCCATCTTGAGACAGCTGGGG
GAATACGTCAATCATCAACGAAAAGGGCAGAAAGGAGAGAATGGCGGGAT
AGAAGAGGACAAGCAGCAACAAGAACAACAAGAAGGAGGATGGTACTCAC
CACCACCACCGCCGACGGCCATCGTACCCTTGGTGAGGTTCGCATGGCGG
GTTCCCTTTTGGCTGCACTGATAAAGGAAACGGGGCGAAGAGCAAAAACA
CACTCGGAGGGGTTGCTGCTGGGGGCGACGCAAGCCTTGACTGTGGCAGT
TACTGACGACGCCACGGAAACCACGGAGCGGGCATTGTTGCAGATGGATG
TGACAGGTTATGTGTGCACGGGGTGCCGGGATTCGTTTTATCAGCCTTTG
ACAGGAGTGGTGAAACAGGAAAAGGTGGCGGAGGCGACGGCGGGGACGAA
TGGGGAGCATAGTATGAACTGTACGTGGATCAAGTTTTAGCGCGATTGCA
CGCCTTGGTGGATGACATTCAGACAGAAGAGATGGCTTTGAGTGCGTTGA
AAGAAAAATGGCGGCAGATGCGGCGAGTCCTGCGCGAGGAGAAGAGGGCG
GAGGGGGAGAAGGAAGGGAAGGAGGGGTGAACGGCTTTTCCCGCCCCGCC
TTCCACTCGCTCCTCGTCAAGAGCGTGGTTGGCTGGTTCGTTGCCCGACA
TTGCGTCACCACCAAGCCCAGCCTACGGGACCTGGCCATCTTGAGACAGC
TGGGGGAATACGTCAATCATCAACGAAAAGGGCAGAAAGGAGAGAATGGC
GGGATAGAAGAGGACAAGCAGCAACAAGAACAACAAGAAGGAGGATGGTA
CTCACCACCACCACCGCCGACGGCCATCGTACCCTTGGTGAGGTTCGCAT
GGCGGGTTCCCTTTTGGCTGCACTGATAAAGGAAACGGGGCGAAGAGCAA
AAACACACTCGGAGGGGTTGCTGCTGGGGGCGACGCAAGCCTTGACTGTG
GCAGTTACTGACGACGCCACGGAAACCACGGAGCGGGCATTGTTGCAGAT
GGATGTGACAGGTTATGTGTGCACGGGGTGCCGGGATTCGTTTTATCAGC
CTTTGACAGGAGTGGTGAAACAGGAAAAGGTGGCGGAGGCGACGGCGGGG
ACGAATGGGGAGCATAGTATGAACTGTACGTGGATCAAGTTTTAGCGCGA
TTGCACGCCTTGGTGGATGACATTCAGACAGAAGAGATGGCTTTGAGTGC
GTTGAAAGAAAAATGGCGGCAGATGCGGCGAGTCCTGCGCGAGGAGAAGA
GGGCGGAGGGGGAGAAGGAAGGGAAGGAGGGGTGAACGGCTTTTCCCGCC
CCGCCTTCCACTCGCTCCTCGTCAAGAGCGTGGTTGGCTGGTTCGTTGCC
CGACATTGCGTCACCACCAAGCCCAGCCTACGGGACCTGGCCATCTTGAG
ACAGCTGGGGGAATACGTCAATCATCAACGAAAAGGGCAGAAAGGAGAGA
ATGGCGGGATAGAAGAGGACAAGCAGCAACAAGAACAACAAGAAGGAGGA
TGGTACTCACCACCACCACCGCCGACGGCCATCGTACCCTTGGTGAGGTT
CGCATGGCGGGTTCCCTTTTGGCTGCACTGATAAAGGAAACGGGGCGAAG
AGCAAAAACACACTCGGAGGGGTTGCTGCTGGGGGCGACGCAAGCCTTGA
CTGTGGCAGTTACTGACGACGCCACGGAAACCACGGAGCGGGCATTGTTG
CAGATGGATGTGACAGGTTATGTGTGCACGGGGTGCCGGGATTCGTTTTA
TCAGCCTTTGACAGGAGTGGTGAAACAGGAAAAGGTGGCGGAGGCGACGG
CGGGGACGAATGGGGAGCAT
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Synonyms
Publications