jgi.p|Nanoce1779_2|601672, mRNA_8344 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601672
Unique Name	mRNA_8344
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1576
Alignment location	scaffold_23:421691..423567 +

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Properties


Property Name	Value
TranscriptId	601758
Track	FilteredModels2
ProteinId	601672

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:421691..423567 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601672	gene_8344	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601672	mRNA_8344-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8344	CDS_8344	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:421691..423567+
coding sequence from alignment at scaffold_23:421691..423567+

mRNA sequence

>mRNA_8344 ID=mRNA_8344|Name=jgi.p|Nanoce1779_2|601672|organism=Nannochloropsis oceanica|type=mRNA|length=1576bp
CAGCAGAGCTGTGGCACCGTGAGCGAGGATAAATGATCACGTTCAAGTCC
CCATTCAAAGGCGGCAAGTATCCAGACATCCGCGCAGACGGCCCAGTCAA
CACGGCAGCTTTTCATGGCGACATCGACACGCTCAAGACACTCCTCGAGA
CACACGGTAGGCATTCTCTTGCCTTCCTCCCGCAAGGACCCCAGAATTGG
GACGCCTTGATGGTCGCCTCCTTTACCGGGCAAGTAGAAGTTGTCCGCTT
TCTGCTGGACACTGCCCATTTTCCCCTTGAACAGCGGGATAGTAAGCTGC
GGACCCCTATTCATTTAGCGACCAAGTCAGGCAGCATCGCGGTTGTAAGA
CTTCTCCTGGAACGCGGCGCTGACCCCGATAGGATGGATGAAGCGCAACG
GACTGCCCTGACGTACGCCGCCGCCGCGCACAATGTGACGTTACTGAGTT
GTTTGTTGGATGGTGGCGCCGATCCCGATGTAACGGATCAATCGCTTCGG
TCTTGTTTGCACTATCTGGCGGAAGGGGGCCACTCGCACTGTGGCGGTGG
GAGAGGAGGGACATGTGGGAGGGCAGGAGAGGAGGCTGCGGCAGAGGCAG
GGGTGAAGTTGTTGTTGCTGTATGGGGCCCAGGTTGATATTGGGGATACA
TCAGGGCATACGCCTTTGCACCTGGCGGCGGCATCGTCGTCTGTAGGGGT
GGTAAGGTTGTTGTTGGAATTGGGAGGGGCGGATCCGACGAAAAGGGACA
GGCAGGGCATGCTAGCCTTGGGGTTGGCGAAGGGGAGGGAGGTGGAGGCT
ATGTTGAAGGCCGCGCCGTACCAGGTGTATTGCTTGAATAAGTTGAGGTG
TGTGGTGGGCATGATGGTCGAGGGACGAGAAGAGGGAGGGGTGGGAGCGG
AGGAGGAGAGGCAAAAGGGGGGGAATGGTGAGAAGTATGGAAGGGAGAAA
GAGCGGGATTCAAATGAACTTGTATCTTCCTCTCGCTCCCAATTCGCTCT
GCCGTTGACGAAGACGGATTGCCAGCATTTGACGGCGGTGGAGGAGGTGC
GGCATGCGATCGGTCGAGTTCGGCAAGCCATAGAGCCACCCCGGCCGATG
CCCCGCGCGGAGTTTCACCACATGACGGACACAGGAAGCGAGGGAGAGGA
GCAAGACGGCAGTGACGGTAAGAGTGGGGATGTGAATGGAGGAGCGTGGA
CAATGGCTTCTTTTTCTTCTCCGGTAGTACTGTCAGCACCACAAGCACCA
GAAGTATCACCAGAAACAGCACCAGCACCAGCAGTAACAGCAGTATCACC
ATCACCAGAAAAAGCACCAGCACCAGCGGTACCAGTAGCAGACCTAGCTG
CGCGCGTTTTGGAGGAGGCCACCCGACGCATGAATGGTGATTTGTTTTTT
GAGCTTCTTGGCATGTTGTGGTCCTGGAGCTACAAATAGGCGACGAGCTG
CTGAATCACAAAATGAATATCTGTGCGCAGAATAAGAATAAGAAGAAGAG
AAAGAGCTAGAAGAAGAAGGAGAAGAGAAAGAGCTAGAAGAAGAAGAAGG
AGAAGAAGAGAAAGAGCTAGAAGAAG

protein sequence of jgi.p|Nanoce1779_2|601672

>mRNA_8344-protein ID=mRNA_8344-protein|Name=jgi.p|Nanoce1779_2|601672|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MITFKSPFKGGKYPDIRADGPVNTAAFHGDIDTLKTLLETHGRHSLAFLP
QGPQNWDALMVASFTGQVEVVRFLLDTAHFPLEQRDSKLRTPIHLATKSG
SIAVVRLLLERGADPDRMDEAQRTALTYAAAAHNVTLLSCLLDGGADPDV
TDQSLRSCLHYLAEGGHSHCGGGRGGTCGRAGEEAAAEAGVKLLLLYGAQ
VDIGDTSGHTPLHLAAASSSVGVVRLLLELGGADPTKRDRQGMLALGLAK
GREVEAMLKAAPYQVYCLNKLRCVVGMMVEGREEGGVGAEEERQKGGNGE
KYGREKERDSNELVSSSRSQFALPLTKTDCQHLTAVEEVRHAIGRVRQAI
EPPRPMPRAEFHHMTDTGSEGEEQDGSDGKSGDVNGGAWTMASFSSPVVL
SAPQAPEVSPETAPAPAVTAVSPSPEKAPAPAVPVADLAARVLEEATRRM
NGDLFFELLGMLWSWSYK*

mRNA from alignment at scaffold_23:421691..423567+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8344 ID=mRNA_8344|Name=jgi.p|Nanoce1779_2|601672|organism=Nannochloropsis oceanica|type=mRNA|length=1877bp|location=Sequence derived from alignment at scaffold_23:421691..423567+ (Nannochloropsis oceanica)
CAGCAGAGCTGTGGCACCGTGAGCGAGGATAAATGATCACGTTCAAGTCC
CCATTCAAAGGCGGCAAGTATCCAGGTAGGTAAGCCGTCTCGTCCGTTTC
CCATCGCATTCGCCCTCCATATGGCCCGTCTCGGGGCAGGCGGTCTTCAC
ATGTTGTCTGTCTCGAGTAGAATGCCTCCATCCCGGCTATTTTCAAAGCA
TTGACCAAACGAGTATGTTTTCCACCGATTCGATCCTTGTCAGTTGTCGG
GTTATGTTTGTTATGTTTCCTTTCGCGCCTACTGTCTGCTTGCTTGGATT
CTCCTGTCCTCACCCGGTCACTACCCCTCCTGCCCTCCCTGCCCTCTCTT
CCTAACCCCTCGACACGCATGAACAGACATCCGCGCAGACGGCCCAGTCA
ACACGGCAGCTTTTCATGGCGACATCGACACGCTCAAGACACTCCTCGAG
ACACACGGTAGGCATTCTCTTGCCTTCCTCCCGCAAGGACCCCAGAATTG
GGACGCCTTGATGGTCGCCTCCTTTACCGGGCAAGTAGAAGTTGTCCGCT
TTCTGCTGGACACTGCCCATTTTCCCCTTGAACAGCGGGATAGTAAGCTG
CGGACCCCTATTCATTTAGCGACCAAGTCAGGCAGCATCGCGGTTGTAAG
ACTTCTCCTGGAACGCGGCGCTGACCCCGATAGGATGGATGAAGCGCAAC
GGACTGCCCTGACGTACGCCGCCGCCGCGCACAATGTGACGTTACTGAGT
TGTTTGTTGGATGGTGGCGCCGATCCCGATGTAACGGATCAATCGCTTCG
GTCTTGTTTGCACTATCTGGCGGAAGGGGGCCACTCGCACTGTGGCGGTG
GGAGAGGAGGGACATGTGGGAGGGCAGGAGAGGAGGCTGCGGCAGAGGCA
GGGGTGAAGTTGTTGTTGCTGTATGGGGCCCAGGTTGATATTGGGGATAC
ATCAGGGCATACGCCTTTGCACCTGGCGGCGGCATCGTCGTCTGTAGGGG
TGGTAAGGTTGTTGTTGGAATTGGGAGGGGCGGATCCGACGAAAAGGGAC
AGGCAGGGCATGCTAGCCTTGGGGTTGGCGAAGGGGAGGGAGGTGGAGGC
TATGTTGAAGGCCGCGCCGTACCAGGTGTATTGCTTGAATAAGTTGAGGT
GTGTGGTGGGCATGATGGTCGAGGGACGAGAAGAGGGAGGGGTGGGAGCG
GAGGAGGAGAGGCAAAAGGGGGGGAATGGTGAGAAGTATGGAAGGGAGAA
AGAGCGGGATTCAAATGAACTTGTATCTTCCTCTCGCTCCCAATTCGCTC
TGCCGTTGACGAAGACGGATTGCCAGCATTTGACGGCGGTGGAGGAGGTG
CGGCATGCGATCGGTCGAGTTCGGCAAGCCATAGAGCCACCCCGGCCGAT
GCCCCGCGCGGAGTTTCACCACATGACGGACACAGGAAGCGAGGGAGAGG
AGCAAGACGGCAGTGACGGTAAGAGTGGGGATGTGAATGGAGGAGCGTGG
ACAATGGCTTCTTTTTCTTCTCCGGTAGTACTGTCAGCACCACAAGCACC
AGAAGTATCACCAGAAACAGCACCAGCACCAGCAGTAACAGCAGTATCAC
CATCACCAGAAAAAGCACCAGCACCAGCGGTACCAGTAGCAGACCTAGCT
GCGCGCGTTTTGGAGGAGGCCACCCGACGCATGAATGGTGATTTGTTTTT
TGAGCTTCTTGGCATGTTGTGGTCCTGGAGCTACAAATAGGCGACGAGCT
GCTGAATCACAAAATGAATATCTGTGCGCAGAATAAGAATAAGAAGAAGA
GAAAGAGCTAGAAGAAGAAGGAGAAGAGAAAGAGCTAGAAGAAGAAGAAG
GAGAAGAAGAGAAAGAGCTAGAAGAAG

Coding sequence (CDS) from alignment at scaffold_23:421691..423567+

>mRNA_8344 ID=mRNA_8344|Name=jgi.p|Nanoce1779_2|601672|organism=Nannochloropsis oceanica|type=CDS|length=2814bp|location=Sequence derived from alignment at scaffold_23:421691..423567+ (Nannochloropsis oceanica)
ATGATCACGTTCAAGTCCCCATTCAAAGGCGGCAAGTATCCAGACATCCG
CGCAGACGGCCCAGTCAACACGGCAGCTTTTCATGGCGACATCGACACGC
TCAAGACACTCCTCGAGACACACGGTAGGCATTCTCTTGCCTTCCTCCCG
CAAGGACCCCAGAATTGGGACGCCTTGATGGTCGCCTCCTTTACCGGGCA
AGTAGAAGTTGTCCGCTTTCTGCTGGACACTGCCCATTTTCCCCTTGAAC
AGCGGGATAGTAAGCTGCGGACCCCTATTCATTTAGCGACCAAGTCAGGC
AGCATCGCGGTTGTAAGACTTCTCCTGGAACGCGGCGCTGACCCCGATAG
GATGGATGAAGCGCAACGGACTGCCCTGACGTACGCCGCCGCCGCGCACA
ATGTGACGTTACTGAGTTGTTTGTTGGATGGTGGCGCCGATCCCGATGTA
ACGGATCAATCGCTTCGGTCTTGTTTGCACTATCTGGCGGAAGGGGGCCA
CTCGCACTGTGGCGGTGGGAGAGGAGGGACATGTGGGAGGGCAGGAGAGG
AGGCTGCGGCAGAGGCAGGGGTGAAGTTGTTGTTGCTGTATGGGGCCCAG
GTTGATATTGGGGATACATCAGGGCATACGCCTTTGCACCTGGCGGCGGC
ATCGTCGTCTGTAGGGGTGGTAAGGTTGTTGTTGGAATTGGGAGGGGCGG
ATCCGACGAAAAGGGACAGGCAGGGCATGCTAGCCTTGGGGTTGGCGAAG
GGGAGGGAGGTGGAGGCTATGTTGAAGGCCGCGCCGTACCAGGTGTATTG
CTTGAATAAGTTGAGGTGTGTGGTGGGCATGATGGTCGAGGGACGAGAAG
AGGGAGGGGTGGGAGCGGAGGAGGAGAGGCAAAAGGGGGGGAATGGTGAG
AAGTATGGAAGGGAGAAAGAGCGGGATTCAAATGAACTTGTATCTTCCTC
TCGCTCCCAATTCGCTCTGCCGTTGACGAAGACGGATTGCCAGCATTTGA
CGGCGGTGGAGGAGGTGCGGCATGCGATCGGTCGAGTTCGGCAAGCCATA
GAGCCACCCCGGCCGATGCCCCGCGCGGAGTTTCACCACATGACGGACAC
AGGAAGCGAGGGAGAGGAGCAAGACGGCAGTGACGGTAAGAGTGGGGATG
TGAATGGAGGAGCGTGGACAATGGCTTCTTTTTCTTCTCCGGTAGTACTG
TCAGCACCACAAGCACCAGAAGTATCACCAGAAACAGCACCAGCACCAGC
AGTAACAGCAGTATCACCATCACCAGAAAAAGCACCAGCACCAGCGGTAC
CAGTAGCAGACCTAGCTGCGCGCGTTTTGGAGGAGGCCACCCGACGCATG
AATGGTGATTTGTTTTTTGAGCTTCTTGGCATGTTGTGGTCCTGGAGCTA
CAAATAGATGATCACGTTCAAGTCCCCATTCAAAGGCGGCAAGTATCCAG
ACATCCGCGCAGACGGCCCAGTCAACACGGCAGCTTTTCATGGCGACATC
GACACGCTCAAGACACTCCTCGAGACACACGGTAGGCATTCTCTTGCCTT
CCTCCCGCAAGGACCCCAGAATTGGGACGCCTTGATGGTCGCCTCCTTTA
CCGGGCAAGTAGAAGTTGTCCGCTTTCTGCTGGACACTGCCCATTTTCCC
CTTGAACAGCGGGATAGTAAGCTGCGGACCCCTATTCATTTAGCGACCAA
GTCAGGCAGCATCGCGGTTGTAAGACTTCTCCTGGAACGCGGCGCTGACC
CCGATAGGATGGATGAAGCGCAACGGACTGCCCTGACGTACGCCGCCGCC
GCGCACAATGTGACGTTACTGAGTTGTTTGTTGGATGGTGGCGCCGATCC
CGATGTAACGGATCAATCGCTTCGGTCTTGTTTGCACTATCTGGCGGAAG
GGGGCCACTCGCACTGTGGCGGTGGGAGAGGAGGGACATGTGGGAGGGCA
GGAGAGGAGGCTGCGGCAGAGGCAGGGGTGAAGTTGTTGTTGCTGTATGG
GGCCCAGGTTGATATTGGGGATACATCAGGGCATACGCCTTTGCACCTGG
CGGCGGCATCGTCGTCTGTAGGGGTGGTAAGGTTGTTGTTGGAATTGGGA
GGGGCGGATCCGACGAAAAGGGACAGGCAGGGCATGCTAGCCTTGGGGTT
GGCGAAGGGGAGGGAGGTGGAGGCTATGTTGAAGGCCGCGCCGTACCAGG
TGTATTGCTTGAATAAGTTGAGGTGTGTGGTGGGCATGATGGTCGAGGGA
CGAGAAGAGGGAGGGGTGGGAGCGGAGGAGGAGAGGCAAAAGGGGGGGAA
TGGTGAGAAGTATGGAAGGGAGAAAGAGCGGGATTCAAATGAACTTGTAT
CTTCCTCTCGCTCCCAATTCGCTCTGCCGTTGACGAAGACGGATTGCCAG
CATTTGACGGCGGTGGAGGAGGTGCGGCATGCGATCGGTCGAGTTCGGCA
AGCCATAGAGCCACCCCGGCCGATGCCCCGCGCGGAGTTTCACCACATGA
CGGACACAGGAAGCGAGGGAGAGGAGCAAGACGGCAGTGACGGTAAGAGT
GGGGATGTGAATGGAGGAGCGTGGACAATGGCTTCTTTTTCTTCTCCGGT
AGTACTGTCAGCACCACAAGCACCAGAAGTATCACCAGAAACAGCACCAG
CACCAGCAGTAACAGCAGTATCACCATCACCAGAAAAAGCACCAGCACCA
GCGGTACCAGTAGCAGACCTAGCTGCGCGCGTTTTGGAGGAGGCCACCCG
ACGCATGAATGGTGATTTGTTTTTTGAGCTTCTTGGCATGTTGTGGTCCT
GGAGCTACAAATAG

Synonyms

Publications