jgi.p|Nanoce1779_2|601663, mRNA_8342 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601663
Unique Name	mRNA_8342
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2676
Alignment location	scaffold_23:415367..418042 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601749
Track	FilteredModels2
ProteinId	601663

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:415367..418042 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601663	gene_8342	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601663	mRNA_8342-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8342	CDS_8342	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:415367..418042+
coding sequence from alignment at scaffold_23:415367..418042+

mRNA sequence

>mRNA_8342 ID=mRNA_8342|Name=jgi.p|Nanoce1779_2|601663|organism=Nannochloropsis oceanica|type=mRNA|length=2676bp
GTATTAGGTACCGGTCCTTCGTGCCGTTCCGGAACTCGCCCCTTATGATT
GTGAAGCTACGAAGGAAAGAGGGGGAGGGAGGGAGGGAAGGAGGGTGGAA
GGTGGTGATCCCAACGCCAGAGGAAGAAGGGGAGACGGCGGCGGCGAGGA
GGAGGAGGAGCGAGCAGGGGATGGGGGGCCAGCCGGTGGTAAGCCAATTC
CTGCCTGGCAGTGGCAGCGGGGGCTATGGGGGAAGGCTCTACACCTTGGA
GATGGTCCCTCCGTCGCAGATGGCTGCAGCGGGAGTTGGACGAGCAGCAG
CAGCTGCAGTGGGAAAAGGAGCAGCAGCAGTAGGAGGTAGAGGAGAAGGT
GTTGGGGGTGGACCGGAGGACCAGGAGCTCCCGCCCTCCCTAGCGGCGGG
TCTCGGCCTGCTTGGTGCTCCTCCTTCCCTTCCTTTCTCCCTCCCTCCTC
CGTCGCCAGCTACGGTCTCGAAGGGGATGAAGAGAAAACAGCGATCCGCT
ATTTCGAGTATCTCGGATGCTGCTGCTGCGGCAGCAGGGGCGGCACACTC
TCTCCCCTCTCCTTGGACTCATACCGTGAAGAATGAAGGTAGCACAGCAG
CAGCAGCAGCGGCAGCAGCGACAGCATCAGCAGCGGCAGCGCGGACACGG
GATCAGGACCACGTCAACGTGCAGGTGTGCTGCGTCTGCCAGCAAGAGGA
GAAGGCGGAAGAAAAGATCCAGTACCAGCAGCAGCTCGACGAGGACAGGG
TTGGAGGAGGCCTGCTCCCTAAGAAAAAGCGGCGTGTTCCAAACCTCCTC
CTCCTCTGCTCCAGCTGCCCGCGCGCCTACCACTGCCGCTGCCTCCACTA
CCGCGCCCTCCCCTCCGACATGCAATCGTGGGTGTGTGCCGAATGCCGCC
TTCCCCAAGACGAGCCTACGCGGGCAGTGGTGGAGGAGCTGGGGTTGGAG
GCCACCGCGGAAAAAGACGCCAAAAAGTGCCTGGACTGGCTCCTGAAGCA
CGAGCTTAGTGGGGCCTTTGGCGAACCGGTGGAGGTGGAGGCGGTGGCCG
GCTACAGCGACTACGTGCGTCGGCCCATGGACTTGTCCACCATCTGGGAC
CGTTACTTCGGCGCGGGCGAAGCGCCGGCGGCGGCGGCGGCGGCTGCAGC
TGCAGCTGCAGCTGCAGAGAAGGGGAAGGGGAAGGGGAAAAAGAAGCACG
GAGATGAAGAAGGAGGAGGAGGGGAAGCAGAAGGGAAGAAATTTCCGTTG
GTAGATTTTGTGAGCGATGTGCGGCGAGTGTGGTTCAACTGTGGAATGTT
CAACAGCAAGAAAACGGTCTTGGCCGTGATTGGGGATCTGATGAGCAGGT
GCTTTGAGCGGAACGTGAGGGAGAGGCTGGTGAGGTATATGGAGGGTGAG
GAGAGGGAGGAGTGCGAAAGGAGGAGGAGGGCGATGAGGAGGGAGGGGAG
GGAGGATTTGAGGAAGTTGAAGAAGGAGGGACGGGTGCCAGAGGGGTACG
TGTGTGGGTTGGGTTTGGAGGAGGAGGATGAGGAGGAGGACGAGGAGGAG
GAGGAGCAGGAGGAAGGAAAGGAATCGGTGATGGCAATACCGAGTGAGGG
AGGCGCGTTGAAGGCCTCTAACAAGGCTGAGAAAGAGAAGGAAGAAGATG
AGAAAGTGAAGGAAATGGAAGTGGTAGTGGCGTTGTCGACCAAGGGAGGG
AAGAAGGGGGCTAAAAAGGCGAGAGTAGTCATTGAGCAGGAGAAGGAGGG
GGCAAGTAGCAAGAGGACTTGCAAAGAGTCGCAGCAGGCGAAAGAAGAGA
AGGAGGAGGAAGAAGCAGAGAAAGATGATGTGATAGTTGCGGCTTCAACA
AAAAGTGCGAAAAAGGGGGCAAAGAGGGCCAAGGTGGTGGAGGCGGCAGC
GAAAGGGAAGAAGGGTGTGCACAAGGAGGGAGGAGAGAAGAAAGATGCAG
AGGGAAATACAGAGGAATTGGTGGTGCCGAAGGCCGGGAAGAAAGATGCA
AAGATGGCCAAGGGGGCGAAGGCCCCGGCGAAGGGGGGAGGAGGAAGAGG
AGGAGGAGAAGGGGTTGGGAAGACAGATGGTAAGTCTGCGCTTACTACGG
CTATCCCACGTTGTCGGGATGCTGTTACCACCGCTGCTGCGGCAGCCGAG
GTAGCGTCGAGTGGTGGTGGAGGAGGAGTCGGCCGCAGAGAGAGAGGGGG
TGGTGTGAAGGCAAGGCCGAAGCGCGGAGGGTCTTAAGGAATGGGCAGTG
ATGATAAAGAATAAATACAGACTCTTAAACATAAGTCAGAGGTAAGAGGA
AGCCCTCGGACGCACTGGGAAGGGATTGGGTTGAAAAGGAAAGCAAAGAA
GACATGCTATTTTTTGTGAGGCGGCGGCGAAGAATTCTTGATGGGCCGTC
CGGATTAACCCAATCGGGGCTTTGCCAGCAACAGACAGACTGTGCCAAAT
CAGCAACCTTGGCAAAGCCATCGGCGCTCGGCAAATTCGTATTCCATCTT
TGGCCTTGTCGACTAATGAAATTAAGAATCGAGGGCATTATAAGCCACGT
TTGGTTCCGCACCAAATGGTGTGTTCATACGCACTTGCCTCGCTCCTGTG
CGGGGGCAGAAATATTTGGGCCTACGCCTTTTTTCCGCAGATGGTAGGAA
TTCCGAAAAAAGAAGCATGCATGCAA

protein sequence of jgi.p|Nanoce1779_2|601663

>mRNA_8342-protein ID=mRNA_8342-protein|Name=jgi.p|Nanoce1779_2|601663|organism=Nannochloropsis oceanica|type=polypeptide|length=731bp
MIVKLRRKEGEGGREGGWKVVIPTPEEEGETAAARRRRSEQGMGGQPVVS
QFLPGSGSGGYGGRLYTLEMVPPSQMAAAGVGRAAAAAVGKGAAAVGGRG
EGVGGGPEDQELPPSLAAGLGLLGAPPSLPFSLPPPSPATVSKGMKRKQR
SAISSISDAAAAAAGAAHSLPSPWTHTVKNEGSTAAAAAAAATASAAAAR
TRDQDHVNVQVCCVCQQEEKAEEKIQYQQQLDEDRVGGGLLPKKKRRVPN
LLLLCSSCPRAYHCRCLHYRALPSDMQSWVCAECRLPQDEPTRAVVEELG
LEATAEKDAKKCLDWLLKHELSGAFGEPVEVEAVAGYSDYVRRPMDLSTI
WDRYFGAGEAPAAAAAAAAAAAAAEKGKGKGKKKHGDEEGGGGEAEGKKF
PLVDFVSDVRRVWFNCGMFNSKKTVLAVIGDLMSRCFERNVRERLVRYME
GEEREECERRRRAMRREGREDLRKLKKEGRVPEGYVCGLGLEEEDEEEDE
EEEEQEEGKESVMAIPSEGGALKASNKAEKEKEEDEKVKEMEVVVALSTK
GGKKGAKKARVVIEQEKEGASSKRTCKESQQAKEEKEEEEAEKDDVIVAA
STKSAKKGAKRAKVVEAAAKGKKGVHKEGGEKKDAEGNTEELVVPKAGKK
DAKMAKGAKAPAKGGGGRGGGEGVGKTDGKSALTTAIPRCRDAVTTAAAA
AEVASSGGGGGVGRRERGGGVKARPKRGGS*

mRNA from alignment at scaffold_23:415367..418042+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8342 ID=mRNA_8342|Name=jgi.p|Nanoce1779_2|601663|organism=Nannochloropsis oceanica|type=mRNA|length=2676bp|location=Sequence derived from alignment at scaffold_23:415367..418042+ (Nannochloropsis oceanica)
GTATTAGGTACCGGTCCTTCGTGCCGTTCCGGAACTCGCCCCTTATGATT
GTGAAGCTACGAAGGAAAGAGGGGGAGGGAGGGAGGGAAGGAGGGTGGAA
GGTGGTGATCCCAACGCCAGAGGAAGAAGGGGAGACGGCGGCGGCGAGGA
GGAGGAGGAGCGAGCAGGGGATGGGGGGCCAGCCGGTGGTAAGCCAATTC
CTGCCTGGCAGTGGCAGCGGGGGCTATGGGGGAAGGCTCTACACCTTGGA
GATGGTCCCTCCGTCGCAGATGGCTGCAGCGGGAGTTGGACGAGCAGCAG
CAGCTGCAGTGGGAAAAGGAGCAGCAGCAGTAGGAGGTAGAGGAGAAGGT
GTTGGGGGTGGACCGGAGGACCAGGAGCTCCCGCCCTCCCTAGCGGCGGG
TCTCGGCCTGCTTGGTGCTCCTCCTTCCCTTCCTTTCTCCCTCCCTCCTC
CGTCGCCAGCTACGGTCTCGAAGGGGATGAAGAGAAAACAGCGATCCGCT
ATTTCGAGTATCTCGGATGCTGCTGCTGCGGCAGCAGGGGCGGCACACTC
TCTCCCCTCTCCTTGGACTCATACCGTGAAGAATGAAGGTAGCACAGCAG
CAGCAGCAGCGGCAGCAGCGACAGCATCAGCAGCGGCAGCGCGGACACGG
GATCAGGACCACGTCAACGTGCAGGTGTGCTGCGTCTGCCAGCAAGAGGA
GAAGGCGGAAGAAAAGATCCAGTACCAGCAGCAGCTCGACGAGGACAGGG
TTGGAGGAGGCCTGCTCCCTAAGAAAAAGCGGCGTGTTCCAAACCTCCTC
CTCCTCTGCTCCAGCTGCCCGCGCGCCTACCACTGCCGCTGCCTCCACTA
CCGCGCCCTCCCCTCCGACATGCAATCGTGGGTGTGTGCCGAATGCCGCC
TTCCCCAAGACGAGCCTACGCGGGCAGTGGTGGAGGAGCTGGGGTTGGAG
GCCACCGCGGAAAAAGACGCCAAAAAGTGCCTGGACTGGCTCCTGAAGCA
CGAGCTTAGTGGGGCCTTTGGCGAACCGGTGGAGGTGGAGGCGGTGGCCG
GCTACAGCGACTACGTGCGTCGGCCCATGGACTTGTCCACCATCTGGGAC
CGTTACTTCGGCGCGGGCGAAGCGCCGGCGGCGGCGGCGGCGGCTGCAGC
TGCAGCTGCAGCTGCAGAGAAGGGGAAGGGGAAGGGGAAAAAGAAGCACG
GAGATGAAGAAGGAGGAGGAGGGGAAGCAGAAGGGAAGAAATTTCCGTTG
GTAGATTTTGTGAGCGATGTGCGGCGAGTGTGGTTCAACTGTGGAATGTT
CAACAGCAAGAAAACGGTCTTGGCCGTGATTGGGGATCTGATGAGCAGGT
GCTTTGAGCGGAACGTGAGGGAGAGGCTGGTGAGGTATATGGAGGGTGAG
GAGAGGGAGGAGTGCGAAAGGAGGAGGAGGGCGATGAGGAGGGAGGGGAG
GGAGGATTTGAGGAAGTTGAAGAAGGAGGGACGGGTGCCAGAGGGGTACG
TGTGTGGGTTGGGTTTGGAGGAGGAGGATGAGGAGGAGGACGAGGAGGAG
GAGGAGCAGGAGGAAGGAAAGGAATCGGTGATGGCAATACCGAGTGAGGG
AGGCGCGTTGAAGGCCTCTAACAAGGCTGAGAAAGAGAAGGAAGAAGATG
AGAAAGTGAAGGAAATGGAAGTGGTAGTGGCGTTGTCGACCAAGGGAGGG
AAGAAGGGGGCTAAAAAGGCGAGAGTAGTCATTGAGCAGGAGAAGGAGGG
GGCAAGTAGCAAGAGGACTTGCAAAGAGTCGCAGCAGGCGAAAGAAGAGA
AGGAGGAGGAAGAAGCAGAGAAAGATGATGTGATAGTTGCGGCTTCAACA
AAAAGTGCGAAAAAGGGGGCAAAGAGGGCCAAGGTGGTGGAGGCGGCAGC
GAAAGGGAAGAAGGGTGTGCACAAGGAGGGAGGAGAGAAGAAAGATGCAG
AGGGAAATACAGAGGAATTGGTGGTGCCGAAGGCCGGGAAGAAAGATGCA
AAGATGGCCAAGGGGGCGAAGGCCCCGGCGAAGGGGGGAGGAGGAAGAGG
AGGAGGAGAAGGGGTTGGGAAGACAGATGGTAAGTCTGCGCTTACTACGG
CTATCCCACGTTGTCGGGATGCTGTTACCACCGCTGCTGCGGCAGCCGAG
GTAGCGTCGAGTGGTGGTGGAGGAGGAGTCGGCCGCAGAGAGAGAGGGGG
TGGTGTGAAGGCAAGGCCGAAGCGCGGAGGGTCTTAAGGAATGGGCAGTG
ATGATAAAGAATAAATACAGACTCTTAAACATAAGTCAGAGGTAAGAGGA
AGCCCTCGGACGCACTGGGAAGGGATTGGGTTGAAAAGGAAAGCAAAGAA
GACATGCTATTTTTTGTGAGGCGGCGGCGAAGAATTCTTGATGGGCCGTC
CGGATTAACCCAATCGGGGCTTTGCCAGCAACAGACAGACTGTGCCAAAT
CAGCAACCTTGGCAAAGCCATCGGCGCTCGGCAAATTCGTATTCCATCTT
TGGCCTTGTCGACTAATGAAATTAAGAATCGAGGGCATTATAAGCCACGT
TTGGTTCCGCACCAAATGGTGTGTTCATACGCACTTGCCTCGCTCCTGTG
CGGGGGCAGAAATATTTGGGCCTACGCCTTTTTTCCGCAGATGGTAGGAA
TTCCGAAAAAAGAAGCATGCATGCAA

Coding sequence (CDS) from alignment at scaffold_23:415367..418042+

>mRNA_8342 ID=mRNA_8342|Name=jgi.p|Nanoce1779_2|601663|organism=Nannochloropsis oceanica|type=CDS|length=2193bp|location=Sequence derived from alignment at scaffold_23:415367..418042+ (Nannochloropsis oceanica)
ATGATTGTGAAGCTACGAAGGAAAGAGGGGGAGGGAGGGAGGGAAGGAGG
GTGGAAGGTGGTGATCCCAACGCCAGAGGAAGAAGGGGAGACGGCGGCGG
CGAGGAGGAGGAGGAGCGAGCAGGGGATGGGGGGCCAGCCGGTGGTAAGC
CAATTCCTGCCTGGCAGTGGCAGCGGGGGCTATGGGGGAAGGCTCTACAC
CTTGGAGATGGTCCCTCCGTCGCAGATGGCTGCAGCGGGAGTTGGACGAG
CAGCAGCAGCTGCAGTGGGAAAAGGAGCAGCAGCAGTAGGAGGTAGAGGA
GAAGGTGTTGGGGGTGGACCGGAGGACCAGGAGCTCCCGCCCTCCCTAGC
GGCGGGTCTCGGCCTGCTTGGTGCTCCTCCTTCCCTTCCTTTCTCCCTCC
CTCCTCCGTCGCCAGCTACGGTCTCGAAGGGGATGAAGAGAAAACAGCGA
TCCGCTATTTCGAGTATCTCGGATGCTGCTGCTGCGGCAGCAGGGGCGGC
ACACTCTCTCCCCTCTCCTTGGACTCATACCGTGAAGAATGAAGGTAGCA
CAGCAGCAGCAGCAGCGGCAGCAGCGACAGCATCAGCAGCGGCAGCGCGG
ACACGGGATCAGGACCACGTCAACGTGCAGGTGTGCTGCGTCTGCCAGCA
AGAGGAGAAGGCGGAAGAAAAGATCCAGTACCAGCAGCAGCTCGACGAGG
ACAGGGTTGGAGGAGGCCTGCTCCCTAAGAAAAAGCGGCGTGTTCCAAAC
CTCCTCCTCCTCTGCTCCAGCTGCCCGCGCGCCTACCACTGCCGCTGCCT
CCACTACCGCGCCCTCCCCTCCGACATGCAATCGTGGGTGTGTGCCGAAT
GCCGCCTTCCCCAAGACGAGCCTACGCGGGCAGTGGTGGAGGAGCTGGGG
TTGGAGGCCACCGCGGAAAAAGACGCCAAAAAGTGCCTGGACTGGCTCCT
GAAGCACGAGCTTAGTGGGGCCTTTGGCGAACCGGTGGAGGTGGAGGCGG
TGGCCGGCTACAGCGACTACGTGCGTCGGCCCATGGACTTGTCCACCATC
TGGGACCGTTACTTCGGCGCGGGCGAAGCGCCGGCGGCGGCGGCGGCGGC
TGCAGCTGCAGCTGCAGCTGCAGAGAAGGGGAAGGGGAAGGGGAAAAAGA
AGCACGGAGATGAAGAAGGAGGAGGAGGGGAAGCAGAAGGGAAGAAATTT
CCGTTGGTAGATTTTGTGAGCGATGTGCGGCGAGTGTGGTTCAACTGTGG
AATGTTCAACAGCAAGAAAACGGTCTTGGCCGTGATTGGGGATCTGATGA
GCAGGTGCTTTGAGCGGAACGTGAGGGAGAGGCTGGTGAGGTATATGGAG
GGTGAGGAGAGGGAGGAGTGCGAAAGGAGGAGGAGGGCGATGAGGAGGGA
GGGGAGGGAGGATTTGAGGAAGTTGAAGAAGGAGGGACGGGTGCCAGAGG
GGTACGTGTGTGGGTTGGGTTTGGAGGAGGAGGATGAGGAGGAGGACGAG
GAGGAGGAGGAGCAGGAGGAAGGAAAGGAATCGGTGATGGCAATACCGAG
TGAGGGAGGCGCGTTGAAGGCCTCTAACAAGGCTGAGAAAGAGAAGGAAG
AAGATGAGAAAGTGAAGGAAATGGAAGTGGTAGTGGCGTTGTCGACCAAG
GGAGGGAAGAAGGGGGCTAAAAAGGCGAGAGTAGTCATTGAGCAGGAGAA
GGAGGGGGCAAGTAGCAAGAGGACTTGCAAAGAGTCGCAGCAGGCGAAAG
AAGAGAAGGAGGAGGAAGAAGCAGAGAAAGATGATGTGATAGTTGCGGCT
TCAACAAAAAGTGCGAAAAAGGGGGCAAAGAGGGCCAAGGTGGTGGAGGC
GGCAGCGAAAGGGAAGAAGGGTGTGCACAAGGAGGGAGGAGAGAAGAAAG
ATGCAGAGGGAAATACAGAGGAATTGGTGGTGCCGAAGGCCGGGAAGAAA
GATGCAAAGATGGCCAAGGGGGCGAAGGCCCCGGCGAAGGGGGGAGGAGG
AAGAGGAGGAGGAGAAGGGGTTGGGAAGACAGATGGTAAGTCTGCGCTTA
CTACGGCTATCCCACGTTGTCGGGATGCTGTTACCACCGCTGCTGCGGCA
GCCGAGGTAGCGTCGAGTGGTGGTGGAGGAGGAGTCGGCCGCAGAGAGAG
AGGGGGTGGTGTGAAGGCAAGGCCGAAGCGCGGAGGGTCTTAA

Synonyms

Publications