jgi.p|Nanoce1779_2|601656, mRNA_8341 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601656
Unique NamemRNA_8341
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length507
Alignment locationscaffold_23:410754..411260 +

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Properties
Property NameValue
TranscriptId601742
TrackFilteredModels2
ProteinId601656
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:410754..411260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601656gene_8341Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601656mRNA_8341-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8341CDS_8341Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8341 ID=mRNA_8341|Name=jgi.p|Nanoce1779_2|601656|organism=Nannochloropsis oceanica|type=mRNA|length=507bp
GGGATGCATGAGGCCTCAACCGACGCAAGTGGCCTTCCGCCTCCCATACC
TCCTCATTCTCCTCCTCCTCCTCCTCCTCTGCGTGTCGCTTTTCCCTACG
TCTCCCCGCCACTCGTTCTTGCTGCTCCTCTTCCTCTGCTTGGATTTCCC
AGTCTCCATCGTATTGGGGTTGAGGAAGCATGGTTTGAGCTTCGCGCGCT
TCCTCGGGTCTCCAGGAAGACGAGGACGAGGAGGGTTGTGGGGACGTGGA
GGCGACGCCGCGCAAGAAATCCTCCACGGCCGCAGTCGACGAGAGGGCAC
GGGTCATGAGCGGAGATGAGGATCGCCGTCGTTTTGCTGTCGTAGTGATA
GTCGTGGTGGTTGCCCGGGGCGTCCGTTGCTGCAAGCGTCTCAGCAGCAT
TTCTGTACTGTGTGCCTCAGGGAGGGCGATAATAGGACTCGACGGCTCGA
CGGCACTTACTGGATCGGTGCGTTGCGTACCCTACCAGCAGTCGAAAGCG
TCACCTG
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protein sequence of jgi.p|Nanoce1779_2|601656

>mRNA_8341-protein ID=mRNA_8341-protein|Name=jgi.p|Nanoce1779_2|601656|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MRPQPTQVAFRLPYLLILLLLLLLCVSLFPTSPRHSFLLLLFLCLDFPVS
IVLGLRKHGLSFARFLGSPGRRGRGGLWGRGGDAAQEILHGRSRREGTGH
ERR*
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mRNA from alignment at scaffold_23:410754..411260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8341 ID=mRNA_8341|Name=jgi.p|Nanoce1779_2|601656|organism=Nannochloropsis oceanica|type=mRNA|length=507bp|location=Sequence derived from alignment at scaffold_23:410754..411260+ (Nannochloropsis oceanica)
GGGATGCATGAGGCCTCAACCGACGCAAGTGGCCTTCCGCCTCCCATACC
TCCTCATTCTCCTCCTCCTCCTCCTCCTCTGCGTGTCGCTTTTCCCTACG
TCTCCCCGCCACTCGTTCTTGCTGCTCCTCTTCCTCTGCTTGGATTTCCC
AGTCTCCATCGTATTGGGGTTGAGGAAGCATGGTTTGAGCTTCGCGCGCT
TCCTCGGGTCTCCAGGAAGACGAGGACGAGGAGGGTTGTGGGGACGTGGA
GGCGACGCCGCGCAAGAAATCCTCCACGGCCGCAGTCGACGAGAGGGCAC
GGGTCATGAGCGGAGATGAGGATCGCCGTCGTTTTGCTGTCGTAGTGATA
GTCGTGGTGGTTGCCCGGGGCGTCCGTTGCTGCAAGCGTCTCAGCAGCAT
TTCTGTACTGTGTGCCTCAGGGAGGGCGATAATAGGACTCGACGGCTCGA
CGGCACTTACTGGATCGGTGCGTTGCGTACCCTACCAGCAGTCGAAAGCG
TCACCTG
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Coding sequence (CDS) from alignment at scaffold_23:410754..411260+

>mRNA_8341 ID=mRNA_8341|Name=jgi.p|Nanoce1779_2|601656|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_23:410754..411260+ (Nannochloropsis oceanica)
ATGAGGCCTCAACCGACGCAAGTGGCCTTCCGCCTCCCATACCTCCTCAT
TCTCCTCCTCCTCCTCCTCCTCTGCGTGTCGCTTTTCCCTACGTCTCCCC
GCCACTCGTTCTTGCTGCTCCTCTTCCTCTGCTTGGATTTCCCAGTCTCC
ATCGTATTGGGGTTGAGGAAGCATGGTTTGAGCTTCGCGCGCTTCCTCGG
GTCTCCAGGAAGACGAGGACGAGGAGGGTTGTGGGGACGTGGAGGCGACG
CCGCGCAAGAAATCCTCCACGGCCGCAGTCGACGAGAGGGCACGGGTCAT
GAGCGGAGATGA
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Synonyms
Publications