jgi.p|Nanoce1779_2|601654, mRNA_8340 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601654
Unique NamemRNA_8340
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length934
Alignment locationscaffold_23:409050..410199 -

Link to JBrowse

Properties
Property NameValue
TranscriptId601740
TrackFilteredModels2
ProteinId601654
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:409050..410199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601654gene_8340Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601654mRNA_8340-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8340CDS_8340Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8340 ID=mRNA_8340|Name=jgi.p|Nanoce1779_2|601654|organism=Nannochloropsis oceanica|type=mRNA|length=934bp
GCGGGCGTGGGGGAAGACACCCTATCTGCGTGGCGGATGCCGGGTGTGGA
GGGTGCGGCGGGCGTAGGGGGAGAGGCCTTACATGCGTGGCGCATCCCGA
GGCCGTTTAGACGGAACGTGGCATTGAGAGACGGATACCGGTGTTGCTTC
TGCGGGTGCCGCCTGTCGTACAGGACACTCACCTTGGACCACGTAGTTCC
CAAGTGCCTGGGGGGGGAGGATAGCTGGGAGAACCTGGCGAGCGCCTGCA
TGCGGTGCAACAGCCGGAAGGGGTCTCTGCGGGTGGAGGAGTTGGGCAAG
ATCAACATGAGGCTCTTGCAGGCCCCGTACGCCCCCACGGCGCTACAGCT
GGCCTACGCCTACGTCGACCTCCTCCCCGCCGCCATCCTCACTCAATGGG
GCCGGTACCTCGAAGGACCTCTGGCCCGAGAAGCAGCCAAGTTCCGTGCC
TTCCACGCCGCCTTCTCCCTCCCGCCCTCCTCTCCTCCCTCCTCTGCTGC
TGCGGCTGCTGGTAAGCCTATGACGTCTTTCCTGAGAGTGGAAGAAGCAT
CATTGCCACAAGTTATGGTCACAGCAACAGCTGCAGTAGCATCTGCAAGG
GCAAAGGGGGATGAGGAGGAGGGAGCAGCTCCTCTTTCAGAGCCATTGGC
CCTGTCGACGTAGACAGGGAGGAAGGAAGGGGAGGCAGATTTGTAAAATG
TATAGCAGACTTTGTTGATTGGAACTTTAGAGATAGCAGCAAGGAAGAGT
CACGGTGTCCATTTATTCAAGATGAAATATCGAGAAATCTAGTTAATTCA
GGAAGGAGACCAGAGGAAGAGAGACAGAGAGAGAGTGAGCGGTCGGTATT
GTGAGCACAAGCCGTGCCATGGACACAGACTCTGCCGTGCCTACCGAAAA
GGAAAAGTTAAGGGTGTGACTACTGGAAGTCTAA
back to top

protein sequence of jgi.p|Nanoce1779_2|601654

>mRNA_8340-protein ID=mRNA_8340-protein|Name=jgi.p|Nanoce1779_2|601654|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MPGVEGAAGVGGEALHAWRIPRPFRRNVALRDGYRCCFCGCRLSYRTLTL
DHVVPKCLGGEDSWENLASACMRCNSRKGSLRVEELGKINMRLLQAPYAP
TALQLAYAYVDLLPAAILTQWGRYLEGPLAREAAKFRAFHAAFSLPPSSP
PSSAAAAAGKPMTSFLRVEEASLPQVMVTATAAVASARAKGDEEEGAAPL
SEPLALST*
back to top

mRNA from alignment at scaffold_23:409050..410199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8340 ID=mRNA_8340|Name=jgi.p|Nanoce1779_2|601654|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp|location=Sequence derived from alignment at scaffold_23:409050..410199- (Nannochloropsis oceanica)
GCGGGCGTGGGGGAAGACACCCTATCTGCGTGGCGGATGCCGGGTGTGGA
GGGTGCGGCGGGCGTAGGGGGAGAGGCCTTACATGCGTGGCGCATCCCGA
GGCCGTTTAGACGGAACGTGGCATTGAGAGACGGATACCGGTGTTGCTTC
TGCGGGTGCCGCCTGTCGTACAGGACACTCACCTTGGACCACGTAGTTCC
CAAGTGCCTGGGGGGGGAGGATAGCTGGGAGAACCTGGCGAGCGCCTGCA
TGCGGTGCAACAGCCGGAAGGGGTCTCTGCGGGTGGAGGAGTTGGGCAAG
ATCAACATGAGGCTCTTGCAGGCCCCGTACGCCCCCACGGCGCTACAGGT
ACGTACGTGCTCCCTCACTCACTCGGGGGTACCGGGTGTTTGTCCGTGCA
GTGGTCGTCGGTTGTTCGAGGGGAGGGGCCTGCATTGCGAGTCTAGATAG
GCCAGTTCCCTCTTTCTCTCGTGTCTTCATGAGGTCACACTCCGTCTCCT
CGTCTCACCCCTCCCCCAACGCACAAAACCCTCACCCTCTCGTTGCACCT
TTTTTCAATAAAAGCTGGCCTACGCCTACGTCGACCTCCTCCCCGCCGCC
ATCCTCACTCAATGGGGCCGGTACCTCGAAGGACCTCTGGCCCGAGAAGC
AGCCAAGTTCCGTGCCTTCCACGCCGCCTTCTCCCTCCCGCCCTCCTCTC
CTCCCTCCTCTGCTGCTGCGGCTGCTGGTAAGCCTATGACGTCTTTCCTG
AGAGTGGAAGAAGCATCATTGCCACAAGTTATGGTCACAGCAACAGCTGC
AGTAGCATCTGCAAGGGCAAAGGGGGATGAGGAGGAGGGAGCAGCTCCTC
TTTCAGAGCCATTGGCCCTGTCGACGTAGACAGGGAGGAAGGAAGGGGAG
GCAGATTTGTAAAATGTATAGCAGACTTTGTTGATTGGAACTTTAGAGAT
AGCAGCAAGGAAGAGTCACGGTGTCCATTTATTCAAGATGAAATATCGAG
AAATCTAGTTAATTCAGGAAGGAGACCAGAGGAAGAGAGACAGAGAGAGA
GTGAGCGGTCGGTATTGTGAGCACAAGCCGTGCCATGGACACAGACTCTG
CCGTGCCTACCGAAAAGGAAAAGTTAAGGGTGTGACTACTGGAAGTCTAA
back to top

Coding sequence (CDS) from alignment at scaffold_23:409050..410199-

>mRNA_8340 ID=mRNA_8340|Name=jgi.p|Nanoce1779_2|601654|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_23:409050..410199- (Nannochloropsis oceanica)
CTGGCCTACGCCTACGTCGACCTCCTCCCCGCCGCCATCCTCACTCAATG
GGGCCGGTACCTCGAAGGACCTCTGGCCCGAGAAGCAGCCAAGTTCCGTG
CCTTCCACGCCGCCTTCTCCCTCCCGCCCTCCTCTCCTCCCTCCTCTGCT
GCTGCGGCTGCTGGTAAGCCTATGACGTCTTTCCTGAGAGTGGAAGAAGC
ATCATTGCCACAAGTTATGGTCACAGCAACAGCTGCAGTAGCATCTGCAA
GGGCAAAGGGGGATGAGGAGGAGGGAGCAGCTCCTCTTTCAGAGCCATTG
GCCCTGTCGACGTAGATGCCGGGTGTGGAGGGTGCGGCGGGCGTAGGGGG
AGAGGCCTTACATGCGTGGCGCATCCCGAGGCCGTTTAGACGGAACGTGG
CATTGAGAGACGGATACCGGTGTTGCTTCTGCGGGTGCCGCCTGTCGTAC
AGGACACTCACCTTGGACCACGTAGTTCCCAAGTGCCTGGGGGGGGAGGA
TAGCTGGGAGAACCTGGCGAGCGCCTGCATGCGGTGCAACAGCCGGAAGG
GGTCTCTGCGGGTGGAGGAGTTGGGCAAGATCAACATGAGGCTCTTGCAG
GCCCCGTACGCCCCCACGGCGCTACAGCTGGCCTACGCCTACGTCGACCT
CCTCCCCGCCGCCATCCTCACTCAATGGGGCCGGTACCTCGAAGGACCTC
TGGCCCGAGAAGCAGCCAAGTTCCGTGCCTTCCACGCCGCCTTCTCCCTC
CCGCCCTCCTCTCCTCCCTCCTCTGCTGCTGCGGCTGCTGGTAAGCCTAT
GACGTCTTTCCTGAGAGTGGAAGAAGCATCATTGCCACAAGTTATGGTCA
CAGCAACAGCTGCAGTAGCATCTGCAAGGGCAAAGGGGGATGAGGAGGAG
GGAGCAGCTCCTCTTTCAGAGCCATTGGCCCTGTCGACGTAGATGCCGGG
TGTGGAGGGTGCGGCGGGCGTAGGGGGAGAGGCCTTACATGCGTGGCGCA
TCCCGAGGCCGTTTAGACGGAACGTGGCATTGAGAGACGGATACCGGTGT
TGCTTCTGCGGGTGCCGCCTGTCGTACAGGACACTCACCTTGGACCACGT
AGTTCCCAAGTGCCTGGGGGGGGAGGATAGCTGGGAGAACCTGGCGAGCG
CCTGCATGCGGTGCAACAGCCGGAAGGGGTCTCTGCGGGTGGAGGAGTTG
GGCAAGATCAACATGAGGCTCTTGCAGGCCCCGTACGCCCCCACGGCGCT
ACAG
back to top
Synonyms
Publications