jgi.p|Nanoce1779_2|624605, mRNA_834 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|624605
Unique NamemRNA_834
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length632
Alignment locationscaffold_2:535686..536898 -

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Properties
Property NameValue
TranscriptId624691
TrackFilteredModels2
ProteinId624605
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:535686..536898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624605gene_834Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624605mRNA_834-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_834CDS_834Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_834 ID=mRNA_834|Name=jgi.p|Nanoce1779_2|624605|organism=Nannochloropsis oceanica|type=mRNA|length=632bp
ATGGAAGGAAGCGAGGCAGGCTGTCAAAAGGACAGCAGAAGAACCTGGAC
CTGTACTACTTGGGCTAGGCAGGACAAACAAATGGTTGAGGAGGCGCGCA
GCAGCAGTGCTGCCAGCAATCAGAGCAGCAGTAATGCGAGCAGCGGCGTC
TCGCTGGAGGACGACGTGGTAGTGACGAATCAATGCATCCGGCGCATTAA
GGCCTTACAGGCCAACACGGGCAAGCAAGACCTTAAGCTCCGTCTGTCCG
TCGAAGGAGGAGGCTGCTCAGGCTTCACATACTCCTTCACCATGGAAGAG
GGGCCGCTTCAGGAGGAGGACCGGGTGTTTGGGCGGGAGGGAGGGCAATT
GGTAATAGATGAGGGGTCACTGGAATTTGTCAAGGGCGCGACGGTGGATT
TCACGGAGGATATGATGCGAAGCGCATTTGCAGTAGTGAATAACCCTCTG
TCGGAATCGGCATGTGGATGTGGGAGTTCGTTTGCAGTCAAAAATTTCGA
GAAAAACCCGGCGATCGATTAGGAAGACTGAGGGAGATAACGAAGGAGGG
GAAAGGGAGGAGCATGTAAATAGTGCAGTGAGAAAACAATTTTAGGAAAT
GAAAGAGAATCAAATAATCCACATCTTTCAGC
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protein sequence of jgi.p|Nanoce1779_2|624605

>mRNA_834-protein ID=mRNA_834-protein|Name=jgi.p|Nanoce1779_2|624605|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MEGSEAGCQKDSRRTWTCTTWARQDKQMVEEARSSSAASNQSSSNASSGV
SLEDDVVVTNQCIRRIKALQANTGKQDLKLRLSVEGGGCSGFTYSFTMEE
GPLQEEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPL
SESACGCGSSFAVKNFEKNPAID*
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mRNA from alignment at scaffold_2:535686..536898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_834 ID=mRNA_834|Name=jgi.p|Nanoce1779_2|624605|organism=Nannochloropsis oceanica|type=mRNA|length=1213bp|location=Sequence derived from alignment at scaffold_2:535686..536898- (Nannochloropsis oceanica)
ATGGAAGGAAGCGAGGCAGGCTGTCAAAAGGACAGCAGAAGAACCTGGAC
CTGTACTACTTGGGCTAGGCAGGACAAACAAATGGTTGAGGAGGCGCGGT
GAGAGCTAGCCAAAGCTGATCGTGGGGGCAGCGCATTTCCACAGGCTGTC
CATTATGTGAAGCAAGAAGCAACGATGAGGCGGGGGTTCCGGTCGCTGAG
AGCTTCGCAGCTTTCCCGTAGCGTTGGGCGACTAGTCACTCCAAACCTTT
TTTCATCTAGAGGAAGCAGGCCCAACATTCTCTTGCACTCACCAAAAAAT
ACGATAACAGGCTCTTCGTAGCGGACGAAAGCTTGAAACGCAAGCACCGG
AAGCCCAGCCTAACTCCTTTCAAAGCCAAAACAAGTACACACGATTAGGG
ACGAGGGCGCCTTCAGTTGCTCCTCTACTTCCACAGCAGCCTTCCTAGAC
CGCAGCGCCTCAGCATCACCGCAATAAGCATGCTGCCAAGGCGTCTTAGC
GCCATCGGAGCTTTGCGTTCCAGTTTTAGAGACATGCACGCGGCAGTCAC
ATTCGCCAATACAAGACCCACCGCAGCAGGAACGCTTGCACAACCTTTAT
CATTCCCTTTGTTAGGGTTAGCCGTAGAACCACCACACTTGCCATGGACC
CACCAGCAAGCTCGCCGGCTTCTGAGCAGCAGCAGCAGTGCTGCCAGCAA
TCAGAGCAGCAGTAATGCGAGCAGCGGCGTCTCGCTGGAGGACGACGTGG
TAGTGACGAATCAATGCATCCGGCGCATTAAGGCCTTACAGGCCAACACG
GGCAAGCAAGACCTTAAGCTCCGTCTGTCCGTCGAAGGAGGAGGCTGCTC
AGGCTTCACATACTCCTTCACCATGGAAGAGGGGCCGCTTCAGGAGGAGG
ACCGGGTGTTTGGGCGGGAGGGAGGGCAATTGGTAATAGATGAGGGGTCA
CTGGAATTTGTCAAGGGCGCGACGGTGGATTTCACGGAGGATATGATGCG
AAGCGCATTTGCAGTAGTGAATAACCCTCTGTCGGAATCGGCATGTGGAT
GTGGGAGTTCGTTTGCAGTCAAAAATTTCGAGAAAAACCCGGCGATCGAT
TAGGAAGACTGAGGGAGATAACGAAGGAGGGGAAAGGGAGGAGCATGTAA
ATAGTGCAGTGAGAAAACAATTTTAGGAAATGAAAGAGAATCAAATAATC
CACATCTTTCAGC
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Coding sequence (CDS) from alignment at scaffold_2:535686..536898-

>mRNA_834 ID=mRNA_834|Name=jgi.p|Nanoce1779_2|624605|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_2:535686..536898- (Nannochloropsis oceanica)
CAGCAGCAGTGCTGCCAGCAATCAGAGCAGCAGTAATGCGAGCAGCGGCG
TCTCGCTGGAGGACGACGTGGTAGTGACGAATCAATGCATCCGGCGCATT
AAGGCCTTACAGGCCAACACGGGCAAGCAAGACCTTAAGCTCCGTCTGTC
CGTCGAAGGAGGAGGCTGCTCAGGCTTCACATACTCCTTCACCATGGAAG
AGGGGCCGCTTCAGGAGGAGGACCGGGTGTTTGGGCGGGAGGGAGGGCAA
TTGGTAATAGATGAGGGGTCACTGGAATTTGTCAAGGGCGCGACGGTGGA
TTTCACGGAGGATATGATGCGAAGCGCATTTGCAGTAGTGAATAACCCTC
TGTCGGAATCGGCATGTGGATGTGGGAGTTCGTTTGCAGTCAAAAATTTC
GAGAAAAACCCGGCGATCGATTAGATGGAAGGAAGCGAGGCAGGCTGTCA
AAAGGACAGCAGAAGAACCTGGACCTGTACTACTTGGGCTAGGCAGGACA
AACAAATGGTTGAGGAGGCGCGCAGCAGCAGTGCTGCCAGCAATCAGAGC
AGCAGTAATGCGAGCAGCGGCGTCTCGCTGGAGGACGACGTGGTAGTGAC
GAATCAATGCATCCGGCGCATTAAGGCCTTACAGGCCAACACGGGCAAGC
AAGACCTTAAGCTCCGTCTGTCCGTCGAAGGAGGAGGCTGCTCAGGCTTC
ACATACTCCTTCACCATGGAAGAGGGGCCGCTTCAGGAGGAGGACCGGGT
GTTTGGGCGGGAGGGAGGGCAATTGGTAATAGATGAGGGGTCACTGGAAT
TTGTCAAGGGCGCGACGGTGGATTTCACGGAGGATATGATGCGAAGCGCA
TTTGCAGTAGTGAATAACCCTCTGTCGGAATCGGCATGTGGATGTGGGAG
TTCGTTTGCAGTCAAAAATTTCGAGAAAAACCCGGCGATCGATTAGATGG
AAGGAAGCGAGGCAGGCTGTCAAAAGGACAGCAGAAGAACCTGGACCTGT
ACTACTTGGGCTAGGCAGGACAAACAAATGGTTGAGGAGGCGCG
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Synonyms
Publications