jgi.p|Nanoce1779_2|601653, mRNA_8339 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601653
Unique NamemRNA_8339
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length620
Alignment locationscaffold_23:408310..409045 +

Link to JBrowse

Properties
Property NameValue
TranscriptId601739
TrackFilteredModels2
ProteinId601653
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:408310..409045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601653gene_8339Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601653mRNA_8339-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8339CDS_8339Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8339 ID=mRNA_8339|Name=jgi.p|Nanoce1779_2|601653|organism=Nannochloropsis oceanica|type=mRNA|length=620bp
AGAAGCAGCCATGGCGACCCGAAAGCTCAATCGACTGGCAACGCAGGTGG
CTAAGCTCACGAGCCCGCTGCCGCCCGCTTACAAGCCGTGGGGATACACG
TTTGCCTTTGACATGATGGTGAAACTGGCCGGAACGGCCCGGATCTGGGT
GGAGGAAATGTCGGACCAACGAGCCGTGGTGCATTTGAAGAACCGACGCC
GGGTCCAGAATCACATCGGCGGCATTCACGCTTGTGGGATGGCCCTGGCC
GCGGAGAGTGCTACGGGGATTGTGGTAGGAATGAACGTCCCGGACTCAGC
GTTGCCATTGTGCAAGAGTATGAAGGTGAACTTTGTGCGGCGGTGCGAGG
GGGACATCAAGGCCGAGGCCCATCTGACCGAGGAGCAGTTGACTAAAATA
CACACGGAGGAGAAGGGAGACGTGCTGGTTGCAGTGCAGGTGACAGACTC
GAGTGGAAAGAGCCCGATTACTGCAGAGATGGTGTGGGCGTGGGTGCCTA
AAGTGAGAAAAGAGAAGAAATGAAGTTGAAGACGGTGGAGGTGGTGGGGC
TCTTTGATGCCTCGACGGGCTCAATAGCAAAAAAAAGGAAATAAATCTGC
GGAAAGAGGTCACCTAGGAA
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protein sequence of jgi.p|Nanoce1779_2|601653

>mRNA_8339-protein ID=mRNA_8339-protein|Name=jgi.p|Nanoce1779_2|601653|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MATRKLNRLATQVAKLTSPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEM
SDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPL
CKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGK
SPITAEMVWAWVPKVRKEKK*
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mRNA from alignment at scaffold_23:408310..409045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8339 ID=mRNA_8339|Name=jgi.p|Nanoce1779_2|601653|organism=Nannochloropsis oceanica|type=mRNA|length=736bp|location=Sequence derived from alignment at scaffold_23:408310..409045+ (Nannochloropsis oceanica)
AGAAGCAGCCATGGCGACCCGAAAGCTCAATCGACTGGCAACGCAGGTGG
CTAAGCTCACGAGCCCGCTGCCGCCCGCTTACAAGCCGTGGGGATACACG
TTTGCCTTTGACATGATGGTATGTACTTACCTTTCCCGTTAGCATCTCCT
TTAATTCCTATGTCGTTTTCCCCTTACTACGTGATGCCCCCAGCTCTTAA
CCTCACCCTTTGAGCAATACACGCGTCAACACAGGTGAAACTGGCCGGAA
CGGCCCGGATCTGGGTGGAGGAAATGTCGGACCAACGAGCCGTGGTGCAT
TTGAAGAACCGACGCCGGGTCCAGAATCACATCGGCGGCATTCACGCTTG
TGGGATGGCCCTGGCCGCGGAGAGTGCTACGGGGATTGTGGTAGGAATGA
ACGTCCCGGACTCAGCGTTGCCATTGTGCAAGAGTATGAAGGTGAACTTT
GTGCGGCGGTGCGAGGGGGACATCAAGGCCGAGGCCCATCTGACCGAGGA
GCAGTTGACTAAAATACACACGGAGGAGAAGGGAGACGTGCTGGTTGCAG
TGCAGGTGACAGACTCGAGTGGAAAGAGCCCGATTACTGCAGAGATGGTG
TGGGCGTGGGTGCCTAAAGTGAGAAAAGAGAAGAAATGAAGTTGAAGACG
GTGGAGGTGGTGGGGCTCTTTGATGCCTCGACGGGCTCAATAGCAAAAAA
AAGGAAATAAATCTGCGGAAAGAGGTCACCTAGGAA
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Coding sequence (CDS) from alignment at scaffold_23:408310..409045+

>mRNA_8339 ID=mRNA_8339|Name=jgi.p|Nanoce1779_2|601653|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_23:408310..409045+ (Nannochloropsis oceanica)
ATGGCGACCCGAAAGCTCAATCGACTGGCAACGCAGGTGGCTAAGCTCAC
GAGCCCGCTGCCGCCCGCTTACAAGCCGTGGGGATACACGTTTGCCTTTG
ACATGATGGTGAAACTGGCCGGAACGGCCCGGATCTGGGTGGAGGAAATG
TCGGACCAACGAGCCGTGGTGCATTTGAAGAACCGACGCCGGGTCCAGAA
TCACATCGGCGGCATTCACGCTTGTGGGATGGCCCTGGCCGCGGAGAGTG
CTACGGGGATTGTGGTAGGAATGAACGTCCCGGACTCAGCGTTGCCATTG
TGCAAGAGTATGAAGGTGAACTTTGTGCGGCGGTGCGAGGGGGACATCAA
GGCCGAGGCCCATCTGACCGAGGAGCAGTTGACTAAAATACACACGGAGG
AGAAGGGAGACGTGCTGGTTGCAGTGCAGGTGACAGACTCGAGTGGAAAG
AGCCCGATTACTGCAGAGATGGTGTGGGCGTGGGTGCCTAAAGTGAGAAA
AGAGAAGAAATGAATGGCGACCCGAAAGCTCAATCGACTGGCAACGCAGG
TGGCTAAGCTCACGAGCCCGCTGCCGCCCGCTTACAAGCCGTGGGGATAC
ACGTTTGCCTTTGACATGATGGTGAAACTGGCCGGAACGGCCCGGATCTG
GGTGGAGGAAATGTCGGACCAACGAGCCGTGGTGCATTTGAAGAACCGAC
GCCGGGTCCAGAATCACATCGGCGGCATTCACGCTTGTGGGATGGCCCTG
GCCGCGGAGAGTGCTACGGGGATTGTGGTAGGAATGAACGTCCCGGACTC
AGCGTTGCCATTGTGCAAGAGTATGAAGGTGAACTTTGTGCGGCGGTGCG
AGGGGGACATCAAGGCCGAGGCCCATCTGACCGAGGAGCAGTTGACTAAA
ATACACACGGAGGAGAAGGGAGACGTGCTGGTTGCAGTGCAGGTGACAGA
CTCGAGTGGAAAGAGCCCGATTACTGCAGAGATGGTGTGGGCGTGGGTGC
CTAAAGTGAGAAAAGAGAAGAAATGA
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Synonyms
Publications