jgi.p|Nanoce1779_2|632772, mRNA_8337 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632772
Unique Name	mRNA_8337
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1852
Alignment location	scaffold_23:403539..405545 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632858
Track	FilteredModels2
ProteinId	632772

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:403539..405545 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632772	gene_8337	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632772	mRNA_8337-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8337	CDS_8337	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:403539..405545+
coding sequence from alignment at scaffold_23:403539..405545+

mRNA sequence

>mRNA_8337 ID=mRNA_8337|Name=jgi.p|Nanoce1779_2|632772|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp
ACAGACATATACCAGCCCGCGCCAAAGTCCCATGAGCAAGCAAGCAAACA
TGCCGATAGCCCCTCCGCGTTGTTCTCAGCACCGTGTCATCATCAGTAAA
CTGTGGTCCTTTTGGCTCCTTGTCAGTCTTGCCTTGTTGTCTTCCTCCCG
AGTCCTAGTCAGTGTCCAAGGAGGAGATGCTGTTCTTGCTACTGATGAGC
TCGCCGAGTTTGGGATTTCTGCAAGTGTCAGCGAGAACGAGGACACTGAC
AAAGCGTTCAAGAAGTTAAATTTGCACCCTACCATGGTTTCGATGAACAT
GACCCGCCCACCGACGGTGCAATTGCTGTACCGGGCTGACCGACTGGTGA
ACTGTGCCTGGTCTCCCGTGCTGTCGCCCCAAGACGAGAAGCCCTTCCTC
CCTGATATGAACATCCAGTATAATGTGCAAGGCTTTGTGTTTGCCTCAAA
CGCCTACAGCCAACAGCAACAGCGCCAGCAGCAGGCTAAGCGGCTCGGTC
AGCACATGCACCGTCATAAGCAAACTCCGGCTCCATTGCCCGCACCCACT
CCGCTTCCCTACGACCAGGAAGAGGTGTACCGAATCCGTGGCAGGTATCC
TTACGTGCGCTACTTCAGCTTCACAACGTATGATTCTAGACTGCAGTCGG
TTACGACTTTACATGATACGCAGATTCGACCTTCCTCGGGGAAGAACCCC
TTTAACGACCTGAGCACAACCGAGGCTGACATGGGCTCGTACGAGATTTA
CTTGACCAAGGATGGAAAGAGGGGATACCAGAATGAAATGGCTGCGCTTC
CTCCTGGCTCTACATCGGTTTATGCCCTCTTGGTATTTCGACTCCAGTCG
TTGGACCCACGAGAAGGCAAGGACCGCAGCGGGAGGAACCGCGAGTGGGG
CTTTGTGGACATGCCCGTAGTGGAGATTTTAAACCATATAAAAGGGAAGT
GGGAGGTTGTGCGAAGTTGCTCGGACGAGTTTCAAGATCAAGAAAAGGAC
TTTATAGAAAATTTAAACGTCAGATTCAGCCGCTGGTGGCCTTCGCAGCT
ACATCTAGGCGCGGATTGCAACGCCACGGATTTTTCGCTGTTTGATCCGG
ATCAGAACCCCATAATCCGCCGCGGAGTTGCGGTCCGCAATAACAACGAG
AACTACATATTCTGGTGCATGCCAAAAGAGATAACGAAAAAACAGTATGT
GGTGCGAATTACTGGCAGGCTACCACGAACAGCCTTCGGCTTGTTTGATC
AAATCCGAGTGGCAGACACGGCCGACTACGATTCTCGGTACGTCTCATTT
ACGACCGCAGACGCTACACCTTTGTATCCCTCCTACGACACTGTCAGCGA
CACTGACATTCGAAGCCACTACACTGAAGACTCCACGGGTGGCAATTGGG
ATCGTCGATATAATTTGGTGGCTGCAACTGATGTCGAGCTGGCCAAAAAG
TGCGGTCTTTACGACGGCCACAATGACGTGCTCATCCACTTTACGCGCCC
TCCTACCCAGCCTCACCCACCCCACACTCCGGCAATTGTTATGCGAGAAC
TCTTGCCCCAGGATGGTCAAGAGCGCGTCACCGCTGAAGGAGTAGCGAGC
GTGAGCCTCCGAAACGAGTGTGTGGGACCGAACGGCAAGCTGATTTGCAA
TCCCGTGAAAGCAGCCGAAGTCTTGCTCAAGGAGTTCTATCCATGCGTCG
AGGTGTGGAGCTGCAACCAAGAGACTCACACGCCTGTGCGCCTCCACTGA
ATAGAGAAGTGATCTATTCAACATAGGAAGATTAAATGGCAGAGGATCAG
GAGTGATACAAAATTATCTCGGTAGAAAGGAAAGGAAAAACATAGATGAG
GC

protein sequence of jgi.p|Nanoce1779_2|632772

>mRNA_8337-protein ID=mRNA_8337-protein|Name=jgi.p|Nanoce1779_2|632772|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MSKQANMPIAPPRCSQHRVIISKLWSFWLLVSLALLSSSRVLVSVQGGDA
VLATDELAEFGISASVSENEDTDKAFKKLNLHPTMVSMNMTRPPTVQLLY
RADRLVNCAWSPVLSPQDEKPFLPDMNIQYNVQGFVFASNAYSQQQQRQQ
QAKRLGQHMHRHKQTPAPLPAPTPLPYDQEEVYRIRGRYPYVRYFSFTTY
DSRLQSVTTLHDTQIRPSSGKNPFNDLSTTEADMGSYEIYLTKDGKRGYQ
NEMAALPPGSTSVYALLVFRLQSLDPREGKDRSGRNREWGFVDMPVVEIL
NHIKGKWEVVRSCSDEFQDQEKDFIENLNVRFSRWWPSQLHLGADCNATD
FSLFDPDQNPIIRRGVAVRNNNENYIFWCMPKEITKKQYVVRITGRLPRT
AFGLFDQIRVADTADYDSRYVSFTTADATPLYPSYDTVSDTDIRSHYTED
STGGNWDRRYNLVAATDVELAKKCGLYDGHNDVLIHFTRPPTQPHPPHTP
AIVMRELLPQDGQERVTAEGVASVSLRNECVGPNGKLICNPVKAAEVLLK
EFYPCVEVWSCNQETHTPVRLH*

mRNA from alignment at scaffold_23:403539..405545+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8337 ID=mRNA_8337|Name=jgi.p|Nanoce1779_2|632772|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp|location=Sequence derived from alignment at scaffold_23:403539..405545+ (Nannochloropsis oceanica)
ACAGACATATACCAGCCCGCGCCAAAGTCCCATGAGCAAGCAAGCAAACA
TGCCGATAGCCCCTCCGCGTTGTTCTCAGCACCGTGTCATCATCAGTAAA
CTGTGGTCCTTTTGGCTCCTTGTCAGTCTTGCCTTGTTGTCTTCCTCCCG
AGTCCTAGTCAGGTGTGTATTTGGACCTGATTTGTTTCGTCCATCGAGCC
CGGGGTACCTGCGCTTTCCATCGGAGGTGGCTCGGACTACTTTACCTATG
CCCCCTTTGAGCCTTCATCAATCATCTCATATCAATCCTATTACACTCCA
ATTTCTATCGCACACAGTGTCCAAGGAGGAGATGCTGTTCTTGCTACTGA
TGAGCTCGCCGAGTTTGGGATTTCTGCAAGTGTCAGCGAGAACGAGGACA
CTGACAAAGCGTTCAAGAAGTTAAATTTGCACCCTACCATGGTTTCGATG
AACATGACCCGCCCACCGACGGTGCAATTGCTGTACCGGGCTGACCGACT
GGTGAACTGTGCCTGGTCTCCCGTGCTGTCGCCCCAAGACGAGAAGCCCT
TCCTCCCTGATATGAACATCCAGTATAATGTGCAAGGCTTTGTGTTTGCC
TCAAACGCCTACAGCCAACAGCAACAGCGCCAGCAGCAGGCTAAGCGGCT
CGGTCAGCACATGCACCGTCATAAGCAAACTCCGGCTCCATTGCCCGCAC
CCACTCCGCTTCCCTACGACCAGGAAGAGGTGTACCGAATCCGTGGCAGG
TATCCTTACGTGCGCTACTTCAGCTTCACAACGTATGATTCTAGACTGCA
GTCGGTTACGACTTTACATGATACGCAGATTCGACCTTCCTCGGGGAAGA
ACCCCTTTAACGACCTGAGCACAACCGAGGCTGACATGGGCTCGTACGAG
ATTTACTTGACCAAGGATGGAAAGAGGGGATACCAGAATGAAATGGCTGC
GCTTCCTCCTGGCTCTACATCGGTTTATGCCCTCTTGGTATTTCGACTCC
AGTCGTTGGACCCACGAGAAGGCAAGGACCGCAGCGGGAGGAACCGCGAG
TGGGGCTTTGTGGACATGCCCGTAGTGGAGATTTTAAACCATATAAAAGG
GAAGTGGGAGGTTGTGCGAAGTTGCTCGGACGAGTTTCAAGATCAAGAAA
AGGACTTTATAGAAAATTTAAACGTCAGATTCAGCCGCTGGTGGCCTTCG
CAGCTACATCTAGGCGCGGATTGCAACGCCACGGATTTTTCGCTGTTTGA
TCCGGATCAGAACCCCATAATCCGCCGCGGAGTTGCGGTCCGCAATAACA
ACGAGAACTACATATTCTGGTGCATGCCAAAAGAGATAACGAAAAAACAG
TATGTGGTGCGAATTACTGGCAGGCTACCACGAACAGCCTTCGGCTTGTT
TGATCAAATCCGAGTGGCAGACACGGCCGACTACGATTCTCGGTACGTCT
CATTTACGACCGCAGACGCTACACCTTTGTATCCCTCCTACGACACTGTC
AGCGACACTGACATTCGAAGCCACTACACTGAAGACTCCACGGGTGGCAA
TTGGGATCGTCGATATAATTTGGTGGCTGCAACTGATGTCGAGCTGGCCA
AAAAGTGCGGTCTTTACGACGGCCACAATGACGTGCTCATCCACTTTACG
CGCCCTCCTACCCAGCCTCACCCACCCCACACTCCGGCAATTGTTATGCG
AGAACTCTTGCCCCAGGATGGTCAAGAGCGCGTCACCGCTGAAGGAGTAG
CGAGCGTGAGCCTCCGAAACGAGTGTGTGGGACCGAACGGCAAGCTGATT
TGCAATCCCGTGAAAGCAGCCGAAGTCTTGCTCAAGGAGTTCTATCCATG
CGTCGAGGTGTGGAGCTGCAACCAAGAGACTCACACGCCTGTGCGCCTCC
ACTGAATAGAGAAGTGATCTATTCAACATAGGAAGATTAAATGGCAGAGG
ATCAGGAGTGATACAAAATTATCTCGGTAGAAAGGAAAGGAAAAACATAG
ATGAGGC

Coding sequence (CDS) from alignment at scaffold_23:403539..405545+

>mRNA_8337 ID=mRNA_8337|Name=jgi.p|Nanoce1779_2|632772|organism=Nannochloropsis oceanica|type=CDS|length=3438bp|location=Sequence derived from alignment at scaffold_23:403539..405545+ (Nannochloropsis oceanica)
ATGAGCAAGCAAGCAAACATGCCGATAGCCCCTCCGCGTTGTTCTCAGCA
CCGTGTCATCATCAGTAAACTGTGGTCCTTTTGGCTCCTTGTCAGTCTTG
CCTTGTTGTCTTCCTCCCGAGTCCTAGTCAGTGTCCAAGGAGGAGATGCT
GTTCTTGCTACTGATGAGCTCGCCGAGTTTGGGATTTCTGCAAGTGTCAG
CGAGAACGAGGACACTGACAAAGCGTTCAAGAAGTTAAATTTGCACCCTA
CCATGGTTTCGATGAACATGACCCGCCCACCGACGGTGCAATTGCTGTAC
CGGGCTGACCGACTGGTGAACTGTGCCTGGTCTCCCGTGCTGTCGCCCCA
AGACGAGAAGCCCTTCCTCCCTGATATGAACATCCAGTATAATGTGCAAG
GCTTTGTGTTTGCCTCAAACGCCTACAGCCAACAGCAACAGCGCCAGCAG
CAGGCTAAGCGGCTCGGTCAGCACATGCACCGTCATAAGCAAACTCCGGC
TCCATTGCCCGCACCCACTCCGCTTCCCTACGACCAGGAAGAGGTGTACC
GAATCCGTGGCAGGTATCCTTACGTGCGCTACTTCAGCTTCACAACGTAT
GATTCTAGACTGCAGTCGGTTACGACTTTACATGATACGCAGATTCGACC
TTCCTCGGGGAAGAACCCCTTTAACGACCTGAGCACAACCGAGGCTGACA
TGGGCTCGTACGAGATTTACTTGACCAAGGATGGAAAGAGGGGATACCAG
AATGAAATGGCTGCGCTTCCTCCTGGCTCTACATCGGTTTATGCCCTCTT
GGTATTTCGACTCCAGTCGTTGGACCCACGAGAAGGCAAGGACCGCAGCG
GGAGGAACCGCGAGTGGGGCTTTGTGGACATGCCCGTAGTGGAGATTTTA
AACCATATAAAAGGGAAGTGGGAGGTTGTGCGAAGTTGCTCGGACGAGTT
TCAAGATCAAGAAAAGGACTTTATAGAAAATTTAAACGTCAGATTCAGCC
GCTGGTGGCCTTCGCAGCTACATCTAGGCGCGGATTGCAACGCCACGGAT
TTTTCGCTGTTTGATCCGGATCAGAACCCCATAATCCGCCGCGGAGTTGC
GGTCCGCAATAACAACGAGAACTACATATTCTGGTGCATGCCAAAAGAGA
TAACGAAAAAACAGTATGTGGTGCGAATTACTGGCAGGCTACCACGAACA
GCCTTCGGCTTGTTTGATCAAATCCGAGTGGCAGACACGGCCGACTACGA
TTCTCGGTACGTCTCATTTACGACCGCAGACGCTACACCTTTGTATCCCT
CCTACGACACTGTCAGCGACACTGACATTCGAAGCCACTACACTGAAGAC
TCCACGGGTGGCAATTGGGATCGTCGATATAATTTGGTGGCTGCAACTGA
TGTCGAGCTGGCCAAAAAGTGCGGTCTTTACGACGGCCACAATGACGTGC
TCATCCACTTTACGCGCCCTCCTACCCAGCCTCACCCACCCCACACTCCG
GCAATTGTTATGCGAGAACTCTTGCCCCAGGATGGTCAAGAGCGCGTCAC
CGCTGAAGGAGTAGCGAGCGTGAGCCTCCGAAACGAGTGTGTGGGACCGA
ACGGCAAGCTGATTTGCAATCCCGTGAAAGCAGCCGAAGTCTTGCTCAAG
GAGTTCTATCCATGCGTCGAGGTGTGGAGCTGCAACCAAGAGACTCACAC
GCCTGTGCGCCTCCACTGAATGAGCAAGCAAGCAAACATGCCGATAGCCC
CTCCGCGTTGTTCTCAGCACCGTGTCATCATCAGTAAACTGTGGTCCTTT
TGGCTCCTTGTCAGTCTTGCCTTGTTGTCTTCCTCCCGAGTCCTAGTCAG
TGTCCAAGGAGGAGATGCTGTTCTTGCTACTGATGAGCTCGCCGAGTTTG
GGATTTCTGCAAGTGTCAGCGAGAACGAGGACACTGACAAAGCGTTCAAG
AAGTTAAATTTGCACCCTACCATGGTTTCGATGAACATGACCCGCCCACC
GACGGTGCAATTGCTGTACCGGGCTGACCGACTGGTGAACTGTGCCTGGT
CTCCCGTGCTGTCGCCCCAAGACGAGAAGCCCTTCCTCCCTGATATGAAC
ATCCAGTATAATGTGCAAGGCTTTGTGTTTGCCTCAAACGCCTACAGCCA
ACAGCAACAGCGCCAGCAGCAGGCTAAGCGGCTCGGTCAGCACATGCACC
GTCATAAGCAAACTCCGGCTCCATTGCCCGCACCCACTCCGCTTCCCTAC
GACCAGGAAGAGGTGTACCGAATCCGTGGCAGGTATCCTTACGTGCGCTA
CTTCAGCTTCACAACGTATGATTCTAGACTGCAGTCGGTTACGACTTTAC
ATGATACGCAGATTCGACCTTCCTCGGGGAAGAACCCCTTTAACGACCTG
AGCACAACCGAGGCTGACATGGGCTCGTACGAGATTTACTTGACCAAGGA
TGGAAAGAGGGGATACCAGAATGAAATGGCTGCGCTTCCTCCTGGCTCTA
CATCGGTTTATGCCCTCTTGGTATTTCGACTCCAGTCGTTGGACCCACGA
GAAGGCAAGGACCGCAGCGGGAGGAACCGCGAGTGGGGCTTTGTGGACAT
GCCCGTAGTGGAGATTTTAAACCATATAAAAGGGAAGTGGGAGGTTGTGC
GAAGTTGCTCGGACGAGTTTCAAGATCAAGAAAAGGACTTTATAGAAAAT
TTAAACGTCAGATTCAGCCGCTGGTGGCCTTCGCAGCTACATCTAGGCGC
GGATTGCAACGCCACGGATTTTTCGCTGTTTGATCCGGATCAGAACCCCA
TAATCCGCCGCGGAGTTGCGGTCCGCAATAACAACGAGAACTACATATTC
TGGTGCATGCCAAAAGAGATAACGAAAAAACAGTATGTGGTGCGAATTAC
TGGCAGGCTACCACGAACAGCCTTCGGCTTGTTTGATCAAATCCGAGTGG
CAGACACGGCCGACTACGATTCTCGGTACGTCTCATTTACGACCGCAGAC
GCTACACCTTTGTATCCCTCCTACGACACTGTCAGCGACACTGACATTCG
AAGCCACTACACTGAAGACTCCACGGGTGGCAATTGGGATCGTCGATATA
ATTTGGTGGCTGCAACTGATGTCGAGCTGGCCAAAAAGTGCGGTCTTTAC
GACGGCCACAATGACGTGCTCATCCACTTTACGCGCCCTCCTACCCAGCC
TCACCCACCCCACACTCCGGCAATTGTTATGCGAGAACTCTTGCCCCAGG
ATGGTCAAGAGCGCGTCACCGCTGAAGGAGTAGCGAGCGTGAGCCTCCGA
AACGAGTGTGTGGGACCGAACGGCAAGCTGATTTGCAATCCCGTGAAAGC
AGCCGAAGTCTTGCTCAAGGAGTTCTATCCATGCGTCGAGGTGTGGAGCT
GCAACCAAGAGACTCACACGCCTGTGCGCCTCCACTGA

Synonyms

Publications