jgi.p|Nanoce1779_2|601643, mRNA_8336 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601643
Unique NamemRNA_8336
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length871
Alignment locationscaffold_23:402187..403098 -

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Properties
Property NameValue
TranscriptId601729
TrackFilteredModels2
ProteinId601643
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:402187..403098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601643gene_8336Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601643mRNA_8336-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8336CDS_8336Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8336 ID=mRNA_8336|Name=jgi.p|Nanoce1779_2|601643|organism=Nannochloropsis oceanica|type=mRNA|length=871bp
ACCAGAGGCATCGGCAACATTATCATGTTTTACACAACCACCTCTACCGT
AGCTAGAGTCTTGTTGGCATACTTATGCATCTTCCCATGCACCCATGCCT
TTGTCGTACCCCTTACCAGCAACTTCCAGCCCCTCAGAACCAGCCTCCAG
GCTGCCCCCTCCTCCTCTCCCAGCACCGGCATCAAGAAGCCAACGCTCGA
TTCGAGCATGCCCTGGGACCTTTCTGTCGTCATAAAAAAAGAGGGATACG
CGGACATTCAAGCAGATCTCCGGCTTCGATTCGTCGCAGAGCCCGGTCAC
GAGCCACCACATGGCCGGATCTTTGTCGAGCGGGACCAACGGGCACTTAT
CGCACGAATGACGAGGGATAAAGATGATAAGCAATGGGGCCTGTGGATAT
GGGGCCTATTTGCCAAGCTGCTGTTTCCCTACTTGTACATGACTCTGCCT
GTGCTGGACGAGTGTTTGGCCGATGTGGTAGGGGAGGACGGGGAGAAGAG
ATGCGGTCGGTGTTTGGGGGGATGAGCATTCCAGGCAGGCGGTTGGAAGA
GGCCATGCCCGACCCCTCTCCTCCACCCCTGTACCTGCAGCCGCATCACC
AGCAGCAGCATTAGCTACAGTAGCAGCAGCCTGACTGGTACCTGACGACG
TTGGCACGGCGGATAATCCCCTTGTGATTCACAAGAGAGAAGACAGGCAG
TTTGCCTATCCTTTCTACGGGCACACGCAGCAGCTGGCCAAGAGCACGCG
GTATCAAATACAAAGGCGGCATCGGGGACGAAGTGTCATCGACCGCACAT
GCACGACCACGGGCTCGGCCAAGGGTACAGCACCGTAAGCGGACAGGTCC
GTGGCGTTGACAAGGTATGCC
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protein sequence of jgi.p|Nanoce1779_2|601643

>mRNA_8336-protein ID=mRNA_8336-protein|Name=jgi.p|Nanoce1779_2|601643|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
TRGIGNIIMFYTTTSTVARVLLAYLCIFPCTHAFVVPLTSNFQPLRTSLQ
AAPSSSPSTGIKKPTLDSSMPWDLSVVIKKEGYADIQADLRLRFVAEPGH
EPPHGRIFVERDQRALIARMTRDKDDKQWGLWIWGLFAKLLFPYLYMTLP
VLDECLADVVGEDGEKRCGRCLGG*
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mRNA from alignment at scaffold_23:402187..403098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8336 ID=mRNA_8336|Name=jgi.p|Nanoce1779_2|601643|organism=Nannochloropsis oceanica|type=mRNA|length=912bp|location=Sequence derived from alignment at scaffold_23:402187..403098- (Nannochloropsis oceanica)
ACCAGAGGCATCGGCAACATTATCATGTTTTACACAACCACCTCTACCGT
AGCTAGAGTCTTGTTGGCATACTTATGCATCTTCCCATGCACCCATGCCT
TTGTCGTACCCCTTACCAGCAACTTCCAGCCCCTCAGAACCAGCCTCCAG
GCTGCCCCCTCCTCCTCTCCCAGCACCGGCATCAAGAAGCCAACGCTCGA
TTCGAGCATGCCCTGGGACCTTTCTGTCGTCATAAAAAAAGAGGGATACG
CGGACATTCAAGCAGATCTCCGGCTTCGATTCGTCGCAGAGCCCGGTCAC
GAGCCACCACATGGCCGGATCTTTGTCGAGCGGGACCAACGGGCACTTAT
CGCACGAATGACGAGGGTTTTGCACTGACTCCCTTCCCGGCATGGACTCT
CAGCGAGGATAAAGATGATAAGCAATGGGGCCTGTGGATATGGGGCCTAT
TTGCCAAGCTGCTGTTTCCCTACTTGTACATGACTCTGCCTGTGCTGGAC
GAGTGTTTGGCCGATGTGGTAGGGGAGGACGGGGAGAAGAGATGCGGTCG
GTGTTTGGGGGGATGAGCATTCCAGGCAGGCGGTTGGAAGAGGCCATGCC
CGACCCCTCTCCTCCACCCCTGTACCTGCAGCCGCATCACCAGCAGCAGC
ATTAGCTACAGTAGCAGCAGCCTGACTGGTACCTGACGACGTTGGCACGG
CGGATAATCCCCTTGTGATTCACAAGAGAGAAGACAGGCAGTTTGCCTAT
CCTTTCTACGGGCACACGCAGCAGCTGGCCAAGAGCACGCGGTATCAAAT
ACAAAGGCGGCATCGGGGACGAAGTGTCATCGACCGCACATGCACGACCA
CGGGCTCGGCCAAGGGTACAGCACCGTAAGCGGACAGGTCCGTGGCGTTG
ACAAGGTATGCC
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Coding sequence (CDS) from alignment at scaffold_23:402187..403098-

>mRNA_8336 ID=mRNA_8336|Name=jgi.p|Nanoce1779_2|601643|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_23:402187..403098- (Nannochloropsis oceanica)
GATAAAGATGATAAGCAATGGGGCCTGTGGATATGGGGCCTATTTGCCAA
GCTGCTGTTTCCCTACTTGTACATGACTCTGCCTGTGCTGGACGAGTGTT
TGGCCGATGTGGTAGGGGAGGACGGGGAGAAGAGATGCGGTCGGTGTTTG
GGGGGATGAACCAGAGGCATCGGCAACATTATCATGTTTTACACAACCAC
CTCTACCGTAGCTAGAGTCTTGTTGGCATACTTATGCATCTTCCCATGCA
CCCATGCCTTTGTCGTACCCCTTACCAGCAACTTCCAGCCCCTCAGAACC
AGCCTCCAGGCTGCCCCCTCCTCCTCTCCCAGCACCGGCATCAAGAAGCC
AACGCTCGATTCGAGCATGCCCTGGGACCTTTCTGTCGTCATAAAAAAAG
AGGGATACGCGGACATTCAAGCAGATCTCCGGCTTCGATTCGTCGCAGAG
CCCGGTCACGAGCCACCACATGGCCGGATCTTTGTCGAGCGGGACCAACG
GGCACTTATCGCACGAATGACGAGGGATAAAGATGATAAGCAATGGGGCC
TGTGGATATGGGGCCTATTTGCCAAGCTGCTGTTTCCCTACTTGTACATG
ACTCTGCCTGTGCTGGACGAGTGTTTGGCCGATGTGGTAGGGGAGGACGG
GGAGAAGAGATGCGGTCGGTGTTTGGGGGGATGAACCAGAGGCATCGGCA
ACATTATCATGTTTTACACAACCACCTCTACCGTAGCTAGAGTCTTGTTG
GCATACTTATGCATCTTCCCATGCACCCATGCCTTTGTCGTACCCCTTAC
CAGCAACTTCCAGCCCCTCAGAACCAGCCTCCAGGCTGCCCCCTCCTCCT
CTCCCAGCACCGGCATCAAGAAGCCAACGCTCGATTCGAGCATGCCCTGG
GACCTTTCTGTCGTCATAAAAAAAGAGGGATACGCGGACATTCAAGCAGA
TCTCCGGCTTCGATTCGTCGCAGAGCCCGGTCACGAGCCACCACATGGCC
GGATCTTTGTCGAGCGGGACCAACGGGCACTTATCGCACGAATGACGAGG
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Synonyms
Publications