jgi.p|Nanoce1779_2|532265, mRNA_8335 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532265
Unique Name	mRNA_8335
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2067
Alignment location	scaffold_23:398028..400190 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	532351
Track	FilteredModels2
ProteinId	532265

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:398028..400190 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532265	gene_8335	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532265	mRNA_8335-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8335	CDS_8335	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:398028..400190+
coding sequence from alignment at scaffold_23:398028..400190+

mRNA sequence

>mRNA_8335 ID=mRNA_8335|Name=jgi.p|Nanoce1779_2|532265|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp
ATGGGCAGCCCCGAAGGATGGAACAGCGCTAGCAGCTCCCCCCCCCTCGC
GGAAGGCATTGGCTGGGCAATTTGCCTGGGCTTTGGTGCCGTCTTTAGTC
TCCTTACTACTCTCCTTGTGTGGCTAGAGAATCGCTACAGTGGGACCGAG
CAATCGAGCGAGCATTTTAACACCGCCGGGCGTACTGTCAAGACGGGCTT
AATTGCCGCCGTTGTCTGCTCGCAGTGGACCTGGGCTGCCACCCTCTTAC
AAAGCAGCAACGTAGCCTGGCAGTATGGAGTTTCTGGTCCCTTTTGGTAC
GGGGCGGGGGCGGCTGTGCAGATTTTACTCTTTGGCATCCTTTCAATCGA
AATCAAGCGTAAGGCCCCGAACGCACACACTGTCTGTGAGATCATTCGCG
CACGGTGGGGCAGCACGGCGCACAAGGTTTTTCTCGCCTTCTGCCTCCTG
ACCAACATGCTTGTGACGGCCATGCTGTTGCTGGGAGGGGCGGCCACTAT
AGAAGCCATGACAGGCTTGAGCGTCTACGTGGCTGCTTTCCTCATCCCCC
TGGGCATCATCACCTACACCTTCGCCGACGGCCTGGCCGCCACCTTCCTG
TCCAACTACCTGCACACCATCATCCTCCACGCCGTCCTTATCGTCTTCAT
CGTCGCCGTATACCTCTACCCCCTCCCCGGGGGGCGCAGCCAGCTGGGCT
CCATATCGGACGTTCACAGTCGCCTCATCCGCCTTAATTCCTACACTGTC
GAAGAATGTGCTAGTCGTGGCTTTCTCGCTGGCTCCACCGGCGGCAGCGG
TGTGTCGGCCTGTGGCCCGGTGATTGGGAATCGGGAAGGGAGTTCTCTCA
CCATGTTTTCACAGGGAGGGATGATGTTCGCGATTATCAATCTCGTGGGC
AACTTCGGTACAGTGTTTGTCGATCAGTCCTATTGGCAGGCGGCAATTGC
TGCTCGGCCCAGTGCTGCCGTCAAGGGATATCTACTTGGGGGGTTGTGTT
GGTTCGCCATTCCCTTTGCTTTAGCTACTTCCCTTGGTCTGGCTTGTCTC
GCCCTCGAGCTTCCCTTGACTGCGGCGCAAGCAAATGCCGGTCTGGTGCC
AGTCGCTTCTGCGGTAGAGTTGCTCGGGACGGGGGGAGGGGTGTTGATGC
TGCTAATGGTATTTATGGCGGTGACCTCCTGCGGGTCCGCGGAGCTGATT
GCCGTGTCTTCCCTCTTGACGTATGACGTGTACAAGGCTTATCTTCGTCC
AAATGCCAGCGGTGACGAGCTGCTCAAGGCATCCAGGTGGTGTGTAGTGG
GTTTTGGTCTCCTCATGGGGGTATTGGCTGCTCTGTTGGAGATCGTGGGG
TTGGCGCTGGGGTATGTGTATCTGCTGATGGGGGTGTTAGTGGGCTCGGC
AGTCTTTCCTATTGCCGCATGCCTGTTGTGGAGGAAGGCTTCTGCCCAGG
GAGCTATCCTTGGTGCGGTGGGAGGGATGGTGGTGGCGGTGGCGGCGTGG
CTAGGCACGGCGGCTGCTACTGCTGGAGATGCGGGACTGACGCTGGAGAC
GACGGGGGAATCGATTCCGATGTTGGTGGGGAATTTGGTAGCGATCTTGG
TGAGTATGGGATTGACGACAGGGTATGGGCTGATCTGGCCGGACGAATAT
GATTGGTCGGACACTCGGGCCCTGCAAGGAATCGGGGAGGGGGTGGGGAA
GTTGGATGAGACACAGGCGGAAATGGACCCCAAGCGGTTGAGGGAGGCAA
AAAAATTTGTGTTGAAGTGGGGCGTGTTTTTCAGTGTCGTGATGCTGTTG
TTGTGGCCGCTATTGTCGCTCCCGGCGGGGGCTCCATTCTCATTACCTTA
TTTTAGCCTGTGGGTGTGGATAGGAATCCTGTGGGGGTGCCTGTCTTCGG
TCATCATAACGGTCATGCCATTGGCCGAGAGCAAGGAGGCCATCAAGCAG
GTGGTGATGGGAATGTGGACTGATTTGGGGGGAGGGGGGAAGGTGGGGAG
TACGGAGAGGGTGGTGGAGGGTACGGTTGAGGAGATTATACCTGCCAAAG
CAACCGTGGTTGGTTAA

protein sequence of jgi.p|Nanoce1779_2|532265

>mRNA_8335-protein ID=mRNA_8335-protein|Name=jgi.p|Nanoce1779_2|532265|organism=Nannochloropsis oceanica|type=polypeptide|length=689bp
MGSPEGWNSASSSPPLAEGIGWAICLGFGAVFSLLTTLLVWLENRYSGTE
QSSEHFNTAGRTVKTGLIAAVVCSQWTWAATLLQSSNVAWQYGVSGPFWY
GAGAAVQILLFGILSIEIKRKAPNAHTVCEIIRARWGSTAHKVFLAFCLL
TNMLVTAMLLLGGAATIEAMTGLSVYVAAFLIPLGIITYTFADGLAATFL
SNYLHTIILHAVLIVFIVAVYLYPLPGGRSQLGSISDVHSRLIRLNSYTV
EECASRGFLAGSTGGSGVSACGPVIGNREGSSLTMFSQGGMMFAIINLVG
NFGTVFVDQSYWQAAIAARPSAAVKGYLLGGLCWFAIPFALATSLGLACL
ALELPLTAAQANAGLVPVASAVELLGTGGGVLMLLMVFMAVTSCGSAELI
AVSSLLTYDVYKAYLRPNASGDELLKASRWCVVGFGLLMGVLAALLEIVG
LALGYVYLLMGVLVGSAVFPIAACLLWRKASAQGAILGAVGGMVVAVAAW
LGTAAATAGDAGLTLETTGESIPMLVGNLVAILVSMGLTTGYGLIWPDEY
DWSDTRALQGIGEGVGKLDETQAEMDPKRLREAKKFVLKWGVFFSVVMLL
LWPLLSLPAGAPFSLPYFSLWVWIGILWGCLSSVIITVMPLAESKEAIKQ
VVMGMWTDLGGGGKVGSTERVVEGTVEEIIPAKATVVG*

mRNA from alignment at scaffold_23:398028..400190+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8335 ID=mRNA_8335|Name=jgi.p|Nanoce1779_2|532265|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp|location=Sequence derived from alignment at scaffold_23:398028..400190+ (Nannochloropsis oceanica)
ATGGGCAGCCCCGAAGGATGGAACAGCGCTAGCAGCTCCCCCCCCCTCGC
GGAAGGCATTGGCTGGGCAATTTGCCTGGGCTTTGGTGCCGTCTTTAGTC
TCCTTACTACTCTCCTTGTGTGGCTAGAGAATCGCTACAGTGGGACCGAG
CAATCGAGCGAGCATTTTAACACCGCCGGGCGTACTGTCAAGACGGGCTT
AATTGCCGCCGTTGTCTGCTCGCAGTGGACCTGGGCTGCCACCCTCTTAC
AAAGCAGCAACGTAGCCTGGCAGTATGGAGTTTCTGGTCCCTTTTGGTAC
GGGGCGGGGGCGGCTGTGCAGATTTTACTCTTTGGCATCCTTTCAATCGA
AATCAAGCGTAAGGCCCCGAACGCACACACTGTCTGTGAGATCATTCGCG
CACGGTGGGGCAGCACGGCGCACAAGGTTTTTCTCGCCTTCTGCCTCCTG
ACCAACATGCTTGTGACGGCCATGCTGTTGCTGGGAGGGGCGGCCACTAT
AGAAGCCATGACAGGCTTGAGCGTCTACGTGGCTGCTTTCCTCATCCCCC
TGGGCATCATCACCTACACCTTCGCCGACGGCCTGGCCGCCACCTTCCTG
TCCAACTACCTGCACACCATCATCCTCCACGCCGTCCTTATCGTCTTCAT
CGTCGCCGTATACCTCTACCCCCTCCCCGGGGGGCGCAGCCAGCTGGGCT
CCATATCGGACGTTCACAGTCGCCTCATCCGCCTTAATTCCTACACTGTC
GAAGAATGTGCTAGTCGTGGCTTTCTCGCTGGCTCCACCGGCGGCAGCGG
TGTGTCGGCCTGTGGCCCGGTGATTGGGAATCGGGAAGGGAGTTCTCTCA
CCATGTTTTCACAGGGAGGGATGATGTTCGCGATTATCAATCTCGTGGGC
AACTTCGGTACAGTGTTTGTCGATCAGTCCTATTGGCAGGCGGCAATTGC
TGCTCGGCCCAGTGCTGCCGTCAAGGGATATCTACTTGGGGGGTTGTGTT
GGTTCGCCATTCCCTTTGCTTTAGCTACTTCCCTTGGTCTGGCTTGTCTC
GCCCTCGAGCTTCCCTTGACTGCGGCGCAAGCAAATGCCGGTCTGGTGCC
AGTCGCTTCTGCGGTAGAGTTGCTCGGGACGGGGGGAGGGGTGTTGATGC
TGCTAATGGTATTTATGGCGGTGACCTCCTGCGGGTCCGCGGAGCTGATT
GCCGTGTCTTCCCTCTTGACGTATGACGTGTACAAGGCTTATCTTCGTCC
AAATGCCAGCGGTGACGAGCTGCTCAAGGCATCCAGGTGGTGTGTAGTGG
GTTTTGGTCTCCTCATGGGGGTATTGGCTGCTCTGTTGGAGATCGTGGGG
TTGGCGCTGGGGTATGTGTATCTGCTGATGGGGGTGTTAGTGGGCTCGGC
AGTCTTTCCTATTGCCGCATGCCTGTTGTGGAGGAAGGCTTCTGCCCAGG
GAGCTATCCTTGGTGCGGTGGGAGGGATGGTGGTGGCGGTGGCGGCGTGG
CTAGGCACGGCGGCTGCTACTGCTGGAGATGCGGGACTGACGCTGGAGAC
GACGGGGGAATCGATTCCGATGTTGGTGGGGAATTTGGTAGCGATCTTGG
TGAGTATGGGATTGACGACAGGGTATGGGCTGATCTGGCCGGACGAATAT
GATTGGTCGGACACTCGGGCCCTGCAAGGAATCGGGGAGGGGGTGGGGAA
GTTGGATGAGACACAGGTGGAGGGGGAAGGGGACGAAGAGGTAGTGGTGG
TTGGAGGGAGAGAGGGAGGGAGGACGACAACGGCTGCGGCTGTGGTGGAT
GCTGTCATGGAGGCGGAAATGGACCCCAAGCGGTTGAGGGAGGCAAAAAA
ATTTGTGTTGAAGTGGGGCGTGTTTTTCAGTGTCGTGATGCTGTTGTTGT
GGCCGCTATTGTCGCTCCCGGCGGGGGCTCCATTCTCATTACCTTATTTT
AGCCTGTGGGTGTGGATAGGAATCCTGTGGGGGTGCCTGTCTTCGGTCAT
CATAACGGTCATGCCATTGGCCGAGAGCAAGGAGGCCATCAAGCAGGTGG
TGATGGGAATGTGGACTGATTTGGGGGGAGGGGGGAAGGTGGGGAGTACG
GAGAGGGTGGTGGAGGGTACGGTTGAGGAGATTATACCTGCCAAAGCAAC
CGTGGTTGGTTAA

Coding sequence (CDS) from alignment at scaffold_23:398028..400190+

>mRNA_8335 ID=mRNA_8335|Name=jgi.p|Nanoce1779_2|532265|organism=Nannochloropsis oceanica|type=CDS|length=4134bp|location=Sequence derived from alignment at scaffold_23:398028..400190+ (Nannochloropsis oceanica)
ATGGGCAGCCCCGAAGGATGGAACAGCGCTAGCAGCTCCCCCCCCCTCGC
GGAAGGCATTGGCTGGGCAATTTGCCTGGGCTTTGGTGCCGTCTTTAGTC
TCCTTACTACTCTCCTTGTGTGGCTAGAGAATCGCTACAGTGGGACCGAG
CAATCGAGCGAGCATTTTAACACCGCCGGGCGTACTGTCAAGACGGGCTT
AATTGCCGCCGTTGTCTGCTCGCAGTGGACCTGGGCTGCCACCCTCTTAC
AAAGCAGCAACGTAGCCTGGCAGTATGGAGTTTCTGGTCCCTTTTGGTAC
GGGGCGGGGGCGGCTGTGCAGATTTTACTCTTTGGCATCCTTTCAATCGA
AATCAAGCGTAAGGCCCCGAACGCACACACTGTCTGTGAGATCATTCGCG
CACGGTGGGGCAGCACGGCGCACAAGGTTTTTCTCGCCTTCTGCCTCCTG
ACCAACATGCTTGTGACGGCCATGCTGTTGCTGGGAGGGGCGGCCACTAT
AGAAGCCATGACAGGCTTGAGCGTCTACGTGGCTGCTTTCCTCATCCCCC
TGGGCATCATCACCTACACCTTCGCCGACGGCCTGGCCGCCACCTTCCTG
TCCAACTACCTGCACACCATCATCCTCCACGCCGTCCTTATCGTCTTCAT
CGTCGCCGTATACCTCTACCCCCTCCCCGGGGGGCGCAGCCAGCTGGGCT
CCATATCGGACGTTCACAGTCGCCTCATCCGCCTTAATTCCTACACTGTC
GAAGAATGTGCTAGTCGTGGCTTTCTCGCTGGCTCCACCGGCGGCAGCGG
TGTGTCGGCCTGTGGCCCGGTGATTGGGAATCGGGAAGGGAGTTCTCTCA
CCATGTTTTCACAGGGAGGGATGATGTTCGCGATTATCAATCTCGTGGGC
AACTTCGGTACAGTGTTTGTCGATCAGTCCTATTGGCAGGCGGCAATTGC
TGCTCGGCCCAGTGCTGCCGTCAAGGGATATCTACTTGGGGGGTTGTGTT
GGTTCGCCATTCCCTTTGCTTTAGCTACTTCCCTTGGTCTGGCTTGTCTC
GCCCTCGAGCTTCCCTTGACTGCGGCGCAAGCAAATGCCGGTCTGGTGCC
AGTCGCTTCTGCGGTAGAGTTGCTCGGGACGGGGGGAGGGGTGTTGATGC
TGCTAATGGTATTTATGGCGGTGACCTCCTGCGGGTCCGCGGAGCTGATT
GCCGTGTCTTCCCTCTTGACGTATGACGTGTACAAGGCTTATCTTCGTCC
AAATGCCAGCGGTGACGAGCTGCTCAAGGCATCCAGGTGGTGTGTAGTGG
GTTTTGGTCTCCTCATGGGGGTATTGGCTGCTCTGTTGGAGATCGTGGGG
TTGGCGCTGGGGTATGTGTATCTGCTGATGGGGGTGTTAGTGGGCTCGGC
AGTCTTTCCTATTGCCGCATGCCTGTTGTGGAGGAAGGCTTCTGCCCAGG
GAGCTATCCTTGGTGCGGTGGGAGGGATGGTGGTGGCGGTGGCGGCGTGG
CTAGGCACGGCGGCTGCTACTGCTGGAGATGCGGGACTGACGCTGGAGAC
GACGGGGGAATCGATTCCGATGTTGGTGGGGAATTTGGTAGCGATCTTGG
TGAGTATGGGATTGACGACAGGGTATGGGCTGATCTGGCCGGACGAATAT
GATTGGTCGGACACTCGGGCCCTGCAAGGAATCGGGGAGGGGGTGGGGAA
GTTGGATGAGACACAGGCGGAAATGGACCCCAAGCGGTTGAGGGAGGCAA
AAAAATTTGTGTTGAAGTGGGGCGTGTTTTTCAGTGTCGTGATGCTGTTG
TTGTGGCCGCTATTGTCGCTCCCGGCGGGGGCTCCATTCTCATTACCTTA
TTTTAGCCTGTGGGTGTGGATAGGAATCCTGTGGGGGTGCCTGTCTTCGG
TCATCATAACGGTCATGCCATTGGCCGAGAGCAAGGAGGCCATCAAGCAG
GTGGTGATGGGAATGTGGACTGATTTGGGGGGAGGGGGGAAGGTGGGGAG
TACGGAGAGGGTGGTGGAGGGTACGGTTGAGGAGATTATACCTGCCAAAG
CAACCGTGGTTGGTTAAATGGGCAGCCCCGAAGGATGGAACAGCGCTAGC
AGCTCCCCCCCCCTCGCGGAAGGCATTGGCTGGGCAATTTGCCTGGGCTT
TGGTGCCGTCTTTAGTCTCCTTACTACTCTCCTTGTGTGGCTAGAGAATC
GCTACAGTGGGACCGAGCAATCGAGCGAGCATTTTAACACCGCCGGGCGT
ACTGTCAAGACGGGCTTAATTGCCGCCGTTGTCTGCTCGCAGTGGACCTG
GGCTGCCACCCTCTTACAAAGCAGCAACGTAGCCTGGCAGTATGGAGTTT
CTGGTCCCTTTTGGTACGGGGCGGGGGCGGCTGTGCAGATTTTACTCTTT
GGCATCCTTTCAATCGAAATCAAGCGTAAGGCCCCGAACGCACACACTGT
CTGTGAGATCATTCGCGCACGGTGGGGCAGCACGGCGCACAAGGTTTTTC
TCGCCTTCTGCCTCCTGACCAACATGCTTGTGACGGCCATGCTGTTGCTG
GGAGGGGCGGCCACTATAGAAGCCATGACAGGCTTGAGCGTCTACGTGGC
TGCTTTCCTCATCCCCCTGGGCATCATCACCTACACCTTCGCCGACGGCC
TGGCCGCCACCTTCCTGTCCAACTACCTGCACACCATCATCCTCCACGCC
GTCCTTATCGTCTTCATCGTCGCCGTATACCTCTACCCCCTCCCCGGGGG
GCGCAGCCAGCTGGGCTCCATATCGGACGTTCACAGTCGCCTCATCCGCC
TTAATTCCTACACTGTCGAAGAATGTGCTAGTCGTGGCTTTCTCGCTGGC
TCCACCGGCGGCAGCGGTGTGTCGGCCTGTGGCCCGGTGATTGGGAATCG
GGAAGGGAGTTCTCTCACCATGTTTTCACAGGGAGGGATGATGTTCGCGA
TTATCAATCTCGTGGGCAACTTCGGTACAGTGTTTGTCGATCAGTCCTAT
TGGCAGGCGGCAATTGCTGCTCGGCCCAGTGCTGCCGTCAAGGGATATCT
ACTTGGGGGGTTGTGTTGGTTCGCCATTCCCTTTGCTTTAGCTACTTCCC
TTGGTCTGGCTTGTCTCGCCCTCGAGCTTCCCTTGACTGCGGCGCAAGCA
AATGCCGGTCTGGTGCCAGTCGCTTCTGCGGTAGAGTTGCTCGGGACGGG
GGGAGGGGTGTTGATGCTGCTAATGGTATTTATGGCGGTGACCTCCTGCG
GGTCCGCGGAGCTGATTGCCGTGTCTTCCCTCTTGACGTATGACGTGTAC
AAGGCTTATCTTCGTCCAAATGCCAGCGGTGACGAGCTGCTCAAGGCATC
CAGGTGGTGTGTAGTGGGTTTTGGTCTCCTCATGGGGGTATTGGCTGCTC
TGTTGGAGATCGTGGGGTTGGCGCTGGGGTATGTGTATCTGCTGATGGGG
GTGTTAGTGGGCTCGGCAGTCTTTCCTATTGCCGCATGCCTGTTGTGGAG
GAAGGCTTCTGCCCAGGGAGCTATCCTTGGTGCGGTGGGAGGGATGGTGG
TGGCGGTGGCGGCGTGGCTAGGCACGGCGGCTGCTACTGCTGGAGATGCG
GGACTGACGCTGGAGACGACGGGGGAATCGATTCCGATGTTGGTGGGGAA
TTTGGTAGCGATCTTGGTGAGTATGGGATTGACGACAGGGTATGGGCTGA
TCTGGCCGGACGAATATGATTGGTCGGACACTCGGGCCCTGCAAGGAATC
GGGGAGGGGGTGGGGAAGTTGGATGAGACACAGGCGGAAATGGACCCCAA
GCGGTTGAGGGAGGCAAAAAAATTTGTGTTGAAGTGGGGCGTGTTTTTCA
GTGTCGTGATGCTGTTGTTGTGGCCGCTATTGTCGCTCCCGGCGGGGGCT
CCATTCTCATTACCTTATTTTAGCCTGTGGGTGTGGATAGGAATCCTGTG
GGGGTGCCTGTCTTCGGTCATCATAACGGTCATGCCATTGGCCGAGAGCA
AGGAGGCCATCAAGCAGGTGGTGATGGGAATGTGGACTGATTTGGGGGGA
GGGGGGAAGGTGGGGAGTACGGAGAGGGTGGTGGAGGGTACGGTTGAGGA
GATTATACCTGCCAAAGCAACCGTGGTTGGTTAA

Synonyms

Publications