jgi.p|Nanoce1779_2|601628, mRNA_8331 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601628
Unique NamemRNA_8331
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1301
Alignment locationscaffold_23:385642..386942 -

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Properties
Property NameValue
TranscriptId601714
TrackFilteredModels2
ProteinId601628
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:385642..386942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601628gene_8331Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601628mRNA_8331-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8331CDS_8331Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8331 ID=mRNA_8331|Name=jgi.p|Nanoce1779_2|601628|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
CAGGTGCGCCGTCTTTCCGCCTGTAGCCCACCTTCGGATCCAGTCGTCTC
CACGTCGCCCCGTCGCCCTCTTCCCCCTGACTCACCTGCTGCAGTGACCA
GAGGCATCGGCAACATTATCATGTTTTACACAACCACCTCTACCGTAGCT
AGAGTCTTGTTGGCATACTTATGCATCTTCCTATGCACCCATGCCTTTGT
CGTACCCCTTACCACCAACTTCCGGCCCCTCAGAACCAGCCTCCCAGCTG
CCCCCTCCTCCTCTCCCAGTACCGGCATCAAGAAGCCAACGCTCGATTCG
AGCATGCCCTGGGACCTTTCTGTCGTCATAAAAAAAGAGGGATACGCGGA
CATTCAAGCAGATCTCCGGCTTCGATTCGTCGCAGAGCCCGGTTACGAGC
CGCCGCAAGGCCGGATCTTTGTAGAGCGGGACCAACGGGCACTTATCGAC
ACGGATGACAAGGGTTTTGCACTGACTCCCTCCCCAGCATGGACTCTCAG
CGAGGATAAAGACGATAGGCAATGGGGCCTGTGGATATGGGGCCTATTCG
CCGAGCCGCTGTTTCCCTACTTGTACATGACTCTGCCTGTGCTGGACGAG
TGTTTGGCCGATGTGGTAGGGGAGGACGGGGAGAAGAGGAAAGAAATGCG
GCCAGTGTTCGGGGGGACGGGCATTCCAGGCAGGCGGTTGGATTTTCGCT
TTAACCACGTGCGGGAGGATGGGGCGACGGTTTTGTCGGAGGGTAAAGTA
ACCTTTAAGGAAGTAGAGATGCAGAAAGTCGACCCCTTGGGAATTGGCGG
GCTTGTGAATGTAGGCGACATTAAGGAGGCGGGAGAGGCGCAACTACGGC
CCGTTTTGGTATGATAGATTTCGTTTTCTGTGGTGGTTTAAAGAAATTTG
GTATAGGAAGGAATCAAATATTTGGAATATTTCCTAGCTGTGATTAAGGT
CACAAGAGATCAACAAAATCAGACGAGGGAAGTAACAGGACGTTGCCGAA
GCTTATCTCTTCCTGCTCGGTCTGGTTGAAGACAATACTACATCCATTTA
TTTATCTAACGCCTTTTCTTTCCATTAAATTAAAGAGATGTTACAAATCA
TACACTTGCCTACTCATTTAAGCATCCCCAAACGCCGGTACCGTGCCAGC
TGACTAGCCAGCCCCTCCATGCCCCCCGTGTGGATGTACAACACGGACCG
ATGCCTCGCGGCCAGGACCCCCCAGTTCTCCCTCATCGCCCGCCAAGCAT
GAGGTCCATATAGCAGGTCCAGCTCCAGACCGTGCTCCTCTTTTAGTTCC
T
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protein sequence of jgi.p|Nanoce1779_2|601628

>mRNA_8331-protein ID=mRNA_8331-protein|Name=jgi.p|Nanoce1779_2|601628|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MFYTTTSTVARVLLAYLCIFLCTHAFVVPLTTNFRPLRTSLPAAPSSSPS
TGIKKPTLDSSMPWDLSVVIKKEGYADIQADLRLRFVAEPGYEPPQGRIF
VERDQRALIDTDDKGFALTPSPAWTLSEDKDDRQWGLWIWGLFAEPLFPY
LYMTLPVLDECLADVVGEDGEKRKEMRPVFGGTGIPGRRLDFRFNHVRED
GATVLSEGKVTFKEVEMQKVDPLGIGGLVNVGDIKEAGEAQLRPVLV*
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mRNA from alignment at scaffold_23:385642..386942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8331 ID=mRNA_8331|Name=jgi.p|Nanoce1779_2|601628|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at scaffold_23:385642..386942- (Nannochloropsis oceanica)
CAGGTGCGCCGTCTTTCCGCCTGTAGCCCACCTTCGGATCCAGTCGTCTC
CACGTCGCCCCGTCGCCCTCTTCCCCCTGACTCACCTGCTGCAGTGACCA
GAGGCATCGGCAACATTATCATGTTTTACACAACCACCTCTACCGTAGCT
AGAGTCTTGTTGGCATACTTATGCATCTTCCTATGCACCCATGCCTTTGT
CGTACCCCTTACCACCAACTTCCGGCCCCTCAGAACCAGCCTCCCAGCTG
CCCCCTCCTCCTCTCCCAGTACCGGCATCAAGAAGCCAACGCTCGATTCG
AGCATGCCCTGGGACCTTTCTGTCGTCATAAAAAAAGAGGGATACGCGGA
CATTCAAGCAGATCTCCGGCTTCGATTCGTCGCAGAGCCCGGTTACGAGC
CGCCGCAAGGCCGGATCTTTGTAGAGCGGGACCAACGGGCACTTATCGAC
ACGGATGACAAGGGTTTTGCACTGACTCCCTCCCCAGCATGGACTCTCAG
CGAGGATAAAGACGATAGGCAATGGGGCCTGTGGATATGGGGCCTATTCG
CCGAGCCGCTGTTTCCCTACTTGTACATGACTCTGCCTGTGCTGGACGAG
TGTTTGGCCGATGTGGTAGGGGAGGACGGGGAGAAGAGGAAAGAAATGCG
GCCAGTGTTCGGGGGGACGGGCATTCCAGGCAGGCGGTTGGATTTTCGCT
TTAACCACGTGCGGGAGGATGGGGCGACGGTTTTGTCGGAGGGTAAAGTA
ACCTTTAAGGAAGTAGAGATGCAGAAAGTCGACCCCTTGGGAATTGGCGG
GCTTGTGAATGTAGGCGACATTAAGGAGGCGGGAGAGGCGCAACTACGGC
CCGTTTTGGTATGATAGATTTCGTTTTCTGTGGTGGTTTAAAGAAATTTG
GTATAGGAAGGAATCAAATATTTGGAATATTTCCTAGCTGTGATTAAGGT
CACAAGAGATCAACAAAATCAGACGAGGGAAGTAACAGGACGTTGCCGAA
GCTTATCTCTTCCTGCTCGGTCTGGTTGAAGACAATACTACATCCATTTA
TTTATCTAACGCCTTTTCTTTCCATTAAATTAAAGAGATGTTACAAATCA
TACACTTGCCTACTCATTTAAGCATCCCCAAACGCCGGTACCGTGCCAGC
TGACTAGCCAGCCCCTCCATGCCCCCCGTGTGGATGTACAACACGGACCG
ATGCCTCGCGGCCAGGACCCCCCAGTTCTCCCTCATCGCCCGCCAAGCAT
GAGGTCCATATAGCAGGTCCAGCTCCAGACCGTGCTCCTCTTTTAGTTCC
T
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Coding sequence (CDS) from alignment at scaffold_23:385642..386942-

>mRNA_8331 ID=mRNA_8331|Name=jgi.p|Nanoce1779_2|601628|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_23:385642..386942- (Nannochloropsis oceanica)
ATGTTTTACACAACCACCTCTACCGTAGCTAGAGTCTTGTTGGCATACTT
ATGCATCTTCCTATGCACCCATGCCTTTGTCGTACCCCTTACCACCAACT
TCCGGCCCCTCAGAACCAGCCTCCCAGCTGCCCCCTCCTCCTCTCCCAGT
ACCGGCATCAAGAAGCCAACGCTCGATTCGAGCATGCCCTGGGACCTTTC
TGTCGTCATAAAAAAAGAGGGATACGCGGACATTCAAGCAGATCTCCGGC
TTCGATTCGTCGCAGAGCCCGGTTACGAGCCGCCGCAAGGCCGGATCTTT
GTAGAGCGGGACCAACGGGCACTTATCGACACGGATGACAAGGGTTTTGC
ACTGACTCCCTCCCCAGCATGGACTCTCAGCGAGGATAAAGACGATAGGC
AATGGGGCCTGTGGATATGGGGCCTATTCGCCGAGCCGCTGTTTCCCTAC
TTGTACATGACTCTGCCTGTGCTGGACGAGTGTTTGGCCGATGTGGTAGG
GGAGGACGGGGAGAAGAGGAAAGAAATGCGGCCAGTGTTCGGGGGGACGG
GCATTCCAGGCAGGCGGTTGGATTTTCGCTTTAACCACGTGCGGGAGGAT
GGGGCGACGGTTTTGTCGGAGGGTAAAGTAACCTTTAAGGAAGTAGAGAT
GCAGAAAGTCGACCCCTTGGGAATTGGCGGGCTTGTGAATGTAGGCGACA
TTAAGGAGGCGGGAGAGGCGCAACTACGGCCCGTTTTGGTATGA
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Synonyms
Publications