jgi.p|Nanoce1779_2|652963, mRNA_833 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|652963
Unique Name	mRNA_833
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2093
Alignment location	scaffold_2:533460..535660 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	653049
Track	FilteredModels2
ProteinId	652963

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:533460..535660 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|652963	gene_833	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|652963	mRNA_833-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_833	CDS_833	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:533460..535660+
coding sequence from alignment at scaffold_2:533460..535660+

mRNA sequence

>mRNA_833 ID=mRNA_833|Name=jgi.p|Nanoce1779_2|652963|organism=Nannochloropsis oceanica|type=mRNA|length=2093bp
GGGTGAGGTCATGCACTCTAGCTAGAGTGACCAGGACTCGTCCCCGAGCA
AGCTTTGACCAGATGGACGAAGTCCCACGCGCCCATTTAGGAGCTCTCTC
CTTTGAAGGAAGTCGAAGATGTTGTGTAGATAGTGCTCGGTGTGAAAGGG
TAAATGTGCCTGTGCATGAAGGAAGGTACATGTGCCCGCTTGCCGGCGAG
CGATCGAGGTGCCTCCCTCCCTCCCTTTTCAAACCAGTCTTTCATTTTTT
CAACACTAGACCCACCACCACCACAACACACAGGCAGTGTAGCGACATCG
ATCAAGCCCTCGTTGCCTTGCCCCTGACCACCTGCATCGCGGGCCCAACC
AGAAAATCAACCATCCCTACGGCCCTGCCTCCCCACCACTGTCACCCTCC
CAGCAGCGCCATGACAAGAGGCGACACCCTCGTAGCGCTGCCTTTCATGG
CGCTCATTCTGGCCACTTTTGCTCGTCACAATACCCTGCCATTCCAGAAG
CGCGGCGGCCTCTTGCAGACGTCGGGCCAGTACCATTACCAACAGCAGCA
GCACCAACCAACCCAGCTGCCATCACCACCAGATGAGGCTGGGGGTCCAG
TGCCCCCCCCTCCGCTGCCCGATGCCATGGTGCGGGAAGGGGACACGTAC
CACTTGCCTCTTGCTGCGCTGCGGCATGGTCTCAGGGACGCCTTGGCTTG
GAATGAAGCTCTCGCATTAAATAACCCCATCCCCGGCACCCACCCTCCGC
CCGACTTCCTGATCCGCGCCAGGGCCTCCTTCTTCTTTGGCGAAAGCAAC
GGCACCACATTCTCCGCCCTTCGTGATCTCTACGGGCTCGGCACGCGCGA
ATACCTCTCTTCCCTCGAATCTGGTTTCGAGGTATTCGCCTCCAATAGCA
AATCCCGTCAGTTTTTCTGCTTTACAGGCGATAAGAAATTTATCATAAAA
ACAATGAGTGGGGAGGAGCTCCGAGCACTGACTGCAATCCTGGCAGACTA
CCACACCCACATGGCGGCCAACCCGAGGTCCCTCCTCGTTCATTACTGTG
GTCACTATCATGTGAAGCTCTATCGGGAGCAGACAGACGAATGGGAGGAT
ATCCATTTTTTGGTGATGCGGAATTTGATGACCCCCCCAAAGGAAGGCCT
TACTGTGCGAGAGCTTTATGACGTGAAGGGCTCAACTGTTGGTCGGGCAG
CCTCAGAGAAAGACAAGGCGAAGGAATCAGGAGGGATATTGAAGGATTTA
GACTTAATGGAACGACAGTGGCCCATTGATTTCGGGCGGGAAAGGGAGAA
TTTCCTCAGGCAAATGAGCAGAGATGTCGACTTCCTGAGGGCTAAGGGAG
TCATGGATTATAGCCTTTTATTGGGTGTGTGTCCTGTCCCTGTGGGAATA
TCGGGAATGGCACGGGGGTTAGGGAATGAAGGAGGAAAAGGAGGTGGGTT
TCCTTCGCGGATGTTGAATTTTTTCTTGGGACCACCGGGAGGGACAGGAG
GAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAAACTCGCAGACGGGATGGGTGGTGGTGCATCCGGAGGGGAGGGAGGT
ATATGTGGCGGGGGTGATTGATGTGTTGCAGCTGTATAATCGGAGGAAGT
TGGCGGAGACATTGCTCAAATCTGTGGTGTATAAACGAGAGGCGATCTCA
GCGGTGGATCCGGTACTGTACGCGGCTAGATTCCTACAGTTTGTGGAGCG
GATCGTACAGCAACAGCCGCAGGAGGGGCGGCAGAGGCAAGGTGTAGGAG
GAGGGTGGGCACCCGCCAAGCACCAGCACCAGCACCAGCAACCACCACCA
CCACCGTCGTCGTACTGGGGGGCGTGAGGAAGAGGACGAGGACGAGGACG
ACAAAGGAGGGGGTTGGTGGAGCTAGGTGTTAATAAAATGATAGTGAGGA
GGAGGAGAATGCTGATGGAGGGATGACTGGAGAGGGAGGACTGCTTTATG
TCTTGCCCCTTACTCTTTACCTCGCCCGCAAAAAATGTACCTCTGTAAAA
TAACGAGAACGGAAAATTCACCCACGACGACATAAGTGCCACG

protein sequence of jgi.p|Nanoce1779_2|652963

>mRNA_833-protein ID=mRNA_833-protein|Name=jgi.p|Nanoce1779_2|652963|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp
MDEVPRAHLGALSFEGSRRCCVDSARCERVNVPVHEGRYMCPLAGERSRC
LPPSLFKPVFHFFNTRPTTTTTHRQCSDIDQALVALPLTTCIAGPTRKST
IPTALPPHHCHPPSSAMTRGDTLVALPFMALILATFARHNTLPFQKRGGL
LQTSGQYHYQQQQHQPTQLPSPPDEAGGPVPPPPLPDAMVREGDTYHLPL
AALRHGLRDALAWNEALALNNPIPGTHPPPDFLIRARASFFFGESNGTTF
SALRDLYGLGTREYLSSLESGFEVFASNSKSRQFFCFTGDKKFIIKTMSG
EELRALTAILADYHTHMAANPRSLLVHYCGHYHVKLYREQTDEWEDIHFL
VMRNLMTPPKEGLTVRELYDVKGSTVGRAASEKDKAKESGGILKDLDLME
RQWPIDFGRERENFLRQMSRDVDFLRAKGVMDYSLLLGVCPVPVGISGMA
RGLGNEGGKGGGFPSRMLNFFLGPPGGTGGGGGGGEGGGGGGGGGGGNSQ
TGWVVVHPEGREVYVAGVIDVLQLYNRRKLAETLLKSVVYKREAISAVDP
VLYAARFLQFVERIVQQQPQEGRQRQGVGGGWAPAKHQHQHQQPPPPPSS
YWGA*

mRNA from alignment at scaffold_2:533460..535660+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_833 ID=mRNA_833|Name=jgi.p|Nanoce1779_2|652963|organism=Nannochloropsis oceanica|type=mRNA|length=2201bp|location=Sequence derived from alignment at scaffold_2:533460..535660+ (Nannochloropsis oceanica)
GGGTGAGGTCATGCACTCTAGCTAGAGTGACCAGGACTCGTCCCCGAGCA
AGCTTTGACCAGATGGACGAAGTCCCACGCGCCCATTTAGGAGCTCTCTC
CTTTGAAGGAAGTCGAAGATGTTGTGTAGATAGTGCTCGGTGTGAAAGGG
TAAATGTGCCTGTGCATGAAGGAAGGTACATGTGCCCGCTTGCCGGCGAG
CGATCGAGGTGCCTCCCTCCCTCCCTTTTCAAACCAGTCTTTCATTTTTT
CAACACTAGACCCACCACCACCACAACACACAGGCAGTGTAGCGACATCG
ATCAAGCCCTCGTTGCCTTGCCCCTGACCACCTGCATCGCGGGCCCAACC
AGAAAATCAACCATCCCTACGGCCCTGCCTCCCCACCACTGTCACCCTCC
CAGCAGCGCCATGACAAGAGGCGACACCCTCGTAGCGCTGCCTTTCATGG
CGCTCATTCTGGCCACTTTTGCTCGTCACAATACCCTGCCATTCCAGAAG
CGCGGCGGCCTCTTGCAGACGTCGGGCCAGTACCATTACCAACAGCAGCA
GCACCAACCAACCCAGCTGCCATCACCACCAGATGAGGCTGGGGGTCCAG
TGCCCCCCCCTCCGCTGCCCGATGCCATGGTGCGGGAAGGGGACACGTAC
CACTTGCCTCTTGCTGCGCTGCGGCATGGTCTCAGGGACGCCTTGGCTTG
GAATGAAGTACGTGGGTGTGGTTGCTTTGCATGCTTTGTCGCAAGTCTTG
CTCGGAAGGTTCCATCCGCCCATTCACCTCCTCCTGCTTCCCCTTTCCCT
TCCTTTCAAAAATAGGCTCTCGCATTAAATAACCCCATCCCCGGCACCCA
CCCTCCGCCCGACTTCCTGATCCGCGCCAGGGCCTCCTTCTTCTTTGGCG
AAAGCAACGGCACCACATTCTCCGCCCTTCGTGATCTCTACGGGCTCGGC
ACGCGCGAATACCTCTCTTCCCTCGAATCTGGTTTCGAGGTATTCGCCTC
CAATAGCAAATCCCGTCAGTTTTTCTGCTTTACAGGCGATAAGAAATTTA
TCATAAAAACAATGAGTGGGGAGGAGCTCCGAGCACTGACTGCAATCCTG
GCAGACTACCACACCCACATGGCGGCCAACCCGAGGTCCCTCCTCGTTCA
TTACTGTGGTCACTATCATGTGAAGCTCTATCGGGAGCAGACAGACGAAT
GGGAGGATATCCATTTTTTGGTGATGCGGAATTTGATGACCCCCCCAAAG
GAAGGCCTTACTGTGCGAGAGCTTTATGACGTGAAGGGCTCAACTGTTGG
TCGGGCAGCCTCAGAGAAAGACAAGGCGAAGGAATCAGGAGGGATATTGA
AGGATTTAGACTTAATGGAACGACAGTGGCCCATTGATTTCGGGCGGGAA
AGGGAGAATTTCCTCAGGCAAATGAGCAGAGATGTCGACTTCCTGAGGGC
TAAGGGAGTCATGGATTATAGCCTTTTATTGGGTGTGTGTCCTGTCCCTG
TGGGAATATCGGGAATGGCACGGGGGTTAGGGAATGAAGGAGGAAAAGGA
GGTGGGTTTCCTTCGCGGATGTTGAATTTTTTCTTGGGACCACCGGGAGG
GACAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAAACTCGCAGACGGGATGGGTGGTGGTGCATCCGGAGGGG
AGGGAGGTATATGTGGCGGGGGTGATTGATGTGTTGCAGCTGTATAATCG
GAGGAAGTTGGCGGAGACATTGCTCAAATCTGTGGTGTATAAACGAGAGG
CGATCTCAGCGGTGGATCCGGTACTGTACGCGGCTAGATTCCTACAGTTT
GTGGAGCGGATCGTACAGCAACAGCCGCAGGAGGGGCGGCAGAGGCAAGG
TGTAGGAGGAGGGTGGGCACCCGCCAAGCACCAGCACCAGCACCAGCAAC
CACCACCACCACCGTCGTCGTACTGGGGGGCGTGAGGAAGAGGACGAGGA
CGAGGACGACAAAGGAGGGGGTTGGTGGAGCTAGGTGTTAATAAAATGAT
AGTGAGGAGGAGGAGAATGCTGATGGAGGGATGACTGGAGAGGGAGGACT
GCTTTATGTCTTGCCCCTTACTCTTTACCTCGCCCGCAAAAAATGTACCT
CTGTAAAATAACGAGAACGGAAAATTCACCCACGACGACATAAGTGCCAC
G

Coding sequence (CDS) from alignment at scaffold_2:533460..535660+

>mRNA_833 ID=mRNA_833|Name=jgi.p|Nanoce1779_2|652963|organism=Nannochloropsis oceanica|type=CDS|length=3630bp|location=Sequence derived from alignment at scaffold_2:533460..535660+ (Nannochloropsis oceanica)
ATGGACGAAGTCCCACGCGCCCATTTAGGAGCTCTCTCCTTTGAAGGAAG
TCGAAGATGTTGTGTAGATAGTGCTCGGTGTGAAAGGGTAAATGTGCCTG
TGCATGAAGGAAGGTACATGTGCCCGCTTGCCGGCGAGCGATCGAGGTGC
CTCCCTCCCTCCCTTTTCAAACCAGTCTTTCATTTTTTCAACACTAGACC
CACCACCACCACAACACACAGGCAGTGTAGCGACATCGATCAAGCCCTCG
TTGCCTTGCCCCTGACCACCTGCATCGCGGGCCCAACCAGAAAATCAACC
ATCCCTACGGCCCTGCCTCCCCACCACTGTCACCCTCCCAGCAGCGCCAT
GACAAGAGGCGACACCCTCGTAGCGCTGCCTTTCATGGCGCTCATTCTGG
CCACTTTTGCTCGTCACAATACCCTGCCATTCCAGAAGCGCGGCGGCCTC
TTGCAGACGTCGGGCCAGTACCATTACCAACAGCAGCAGCACCAACCAAC
CCAGCTGCCATCACCACCAGATGAGGCTGGGGGTCCAGTGCCCCCCCCTC
CGCTGCCCGATGCCATGGTGCGGGAAGGGGACACGTACCACTTGCCTCTT
GCTGCGCTGCGGCATGGTCTCAGGGACGCCTTGGCTTGGAATGAAGCTCT
CGCATTAAATAACCCCATCCCCGGCACCCACCCTCCGCCCGACTTCCTGA
TCCGCGCCAGGGCCTCCTTCTTCTTTGGCGAAAGCAACGGCACCACATTC
TCCGCCCTTCGTGATCTCTACGGGCTCGGCACGCGCGAATACCTCTCTTC
CCTCGAATCTGGTTTCGAGGTATTCGCCTCCAATAGCAAATCCCGTCAGT
TTTTCTGCTTTACAGGCGATAAGAAATTTATCATAAAAACAATGAGTGGG
GAGGAGCTCCGAGCACTGACTGCAATCCTGGCAGACTACCACACCCACAT
GGCGGCCAACCCGAGGTCCCTCCTCGTTCATTACTGTGGTCACTATCATG
TGAAGCTCTATCGGGAGCAGACAGACGAATGGGAGGATATCCATTTTTTG
GTGATGCGGAATTTGATGACCCCCCCAAAGGAAGGCCTTACTGTGCGAGA
GCTTTATGACGTGAAGGGCTCAACTGTTGGTCGGGCAGCCTCAGAGAAAG
ACAAGGCGAAGGAATCAGGAGGGATATTGAAGGATTTAGACTTAATGGAA
CGACAGTGGCCCATTGATTTCGGGCGGGAAAGGGAGAATTTCCTCAGGCA
AATGAGCAGAGATGTCGACTTCCTGAGGGCTAAGGGAGTCATGGATTATA
GCCTTTTATTGGGTGTGTGTCCTGTCCCTGTGGGAATATCGGGAATGGCA
CGGGGGTTAGGGAATGAAGGAGGAAAAGGAGGTGGGTTTCCTTCGCGGAT
GTTGAATTTTTTCTTGGGACCACCGGGAGGGACAGGAGGAGGAGGAGGAG
GAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAACTCGCAG
ACGGGATGGGTGGTGGTGCATCCGGAGGGGAGGGAGGTATATGTGGCGGG
GGTGATTGATGTGTTGCAGCTGTATAATCGGAGGAAGTTGGCGGAGACAT
TGCTCAAATCTGTGGTGTATAAACGAGAGGCGATCTCAGCGGTGGATCCG
GTACTGTACGCGGCTAGATTCCTACAGTTTGTGGAGCGGATCGTACAGCA
ACAGCCGCAGGAGGGGCGGCAGAGGCAAGGTGTAGGAGGAGGGTGGGCAC
CCGCCAAGCACCAGCACCAGCACCAGCAACCACCACCACCACCGTCGTCG
TACTGGGGGGCGTGAATGGACGAAGTCCCACGCGCCCATTTAGGAGCTCT
CTCCTTTGAAGGAAGTCGAAGATGTTGTGTAGATAGTGCTCGGTGTGAAA
GGGTAAATGTGCCTGTGCATGAAGGAAGGTACATGTGCCCGCTTGCCGGC
GAGCGATCGAGGTGCCTCCCTCCCTCCCTTTTCAAACCAGTCTTTCATTT
TTTCAACACTAGACCCACCACCACCACAACACACAGGCAGTGTAGCGACA
TCGATCAAGCCCTCGTTGCCTTGCCCCTGACCACCTGCATCGCGGGCCCA
ACCAGAAAATCAACCATCCCTACGGCCCTGCCTCCCCACCACTGTCACCC
TCCCAGCAGCGCCATGACAAGAGGCGACACCCTCGTAGCGCTGCCTTTCA
TGGCGCTCATTCTGGCCACTTTTGCTCGTCACAATACCCTGCCATTCCAG
AAGCGCGGCGGCCTCTTGCAGACGTCGGGCCAGTACCATTACCAACAGCA
GCAGCACCAACCAACCCAGCTGCCATCACCACCAGATGAGGCTGGGGGTC
CAGTGCCCCCCCCTCCGCTGCCCGATGCCATGGTGCGGGAAGGGGACACG
TACCACTTGCCTCTTGCTGCGCTGCGGCATGGTCTCAGGGACGCCTTGGC
TTGGAATGAAGCTCTCGCATTAAATAACCCCATCCCCGGCACCCACCCTC
CGCCCGACTTCCTGATCCGCGCCAGGGCCTCCTTCTTCTTTGGCGAAAGC
AACGGCACCACATTCTCCGCCCTTCGTGATCTCTACGGGCTCGGCACGCG
CGAATACCTCTCTTCCCTCGAATCTGGTTTCGAGGTATTCGCCTCCAATA
GCAAATCCCGTCAGTTTTTCTGCTTTACAGGCGATAAGAAATTTATCATA
AAAACAATGAGTGGGGAGGAGCTCCGAGCACTGACTGCAATCCTGGCAGA
CTACCACACCCACATGGCGGCCAACCCGAGGTCCCTCCTCGTTCATTACT
GTGGTCACTATCATGTGAAGCTCTATCGGGAGCAGACAGACGAATGGGAG
GATATCCATTTTTTGGTGATGCGGAATTTGATGACCCCCCCAAAGGAAGG
CCTTACTGTGCGAGAGCTTTATGACGTGAAGGGCTCAACTGTTGGTCGGG
CAGCCTCAGAGAAAGACAAGGCGAAGGAATCAGGAGGGATATTGAAGGAT
TTAGACTTAATGGAACGACAGTGGCCCATTGATTTCGGGCGGGAAAGGGA
GAATTTCCTCAGGCAAATGAGCAGAGATGTCGACTTCCTGAGGGCTAAGG
GAGTCATGGATTATAGCCTTTTATTGGGTGTGTGTCCTGTCCCTGTGGGA
ATATCGGGAATGGCACGGGGGTTAGGGAATGAAGGAGGAAAAGGAGGTGG
GTTTCCTTCGCGGATGTTGAATTTTTTCTTGGGACCACCGGGAGGGACAG
GAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAACTCGCAGACGGGATGGGTGGTGGTGCATCCGGAGGGGAGGGA
GGTATATGTGGCGGGGGTGATTGATGTGTTGCAGCTGTATAATCGGAGGA
AGTTGGCGGAGACATTGCTCAAATCTGTGGTGTATAAACGAGAGGCGATC
TCAGCGGTGGATCCGGTACTGTACGCGGCTAGATTCCTACAGTTTGTGGA
GCGGATCGTACAGCAACAGCCGCAGGAGGGGCGGCAGAGGCAAGGTGTAG
GAGGAGGGTGGGCACCCGCCAAGCACCAGCACCAGCACCAGCAACCACCA
CCACCACCGTCGTCGTACTGGGGGGCGTGA

Synonyms

Publications