jgi.p|Nanoce1779_2|601610, mRNA_8327 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601610
Unique Name	mRNA_8327
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2279
Alignment location	scaffold_23:376079..378357 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601696
Track	FilteredModels2
ProteinId	601610

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:376079..378357 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601610	gene_8327	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601610	mRNA_8327-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8327	CDS_8327	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:376079..378357+
coding sequence from alignment at scaffold_23:376079..378357+

mRNA sequence

>mRNA_8327 ID=mRNA_8327|Name=jgi.p|Nanoce1779_2|601610|organism=Nannochloropsis oceanica|type=mRNA|length=2279bp
GCTGCTGCTGCTGCTGCTGCTGCTTCTGCCGCTGCTGGGCTTGATGGTGC
TGTTCGTTTTTGTGTGCAAGAGGCGCAGTTGAGGCCCCGGAAGACGCTTG
AGTAAAGATGCGTTTGGTCACGCCGCTGCTGCCCTCCACCAGGGACGGAG
AGACAGCTGACGGCGTGTAGCGCTGAAGCGGCTGGATGCGCAGCACCTGC
GGCAAGGGCGGCACGGATGCTTGCTGTTGTTGCTGCTGCTGTTGTGACGC
ATTCAGCACGCCTGTCCCCTCGCCTGGAAGCGGACGCACGCCCAAGACGC
GCGAGCCCTCCACGTACAGCGCCGTGCCTGTCGTGAGCGTGCGCAGCCCC
CATCCGTCTCCACGGACCAAGCCGCCGCCCCACCGCTCTAGCACCAACAC
ACGCCCGCTCGTGTCTTGCGCCAGAGTCAGCTCCGCGTATCGCCACCGGC
CTCCGTCGCGCGTCGGCCGCCAGCTCAAGACGGGCTTGGGCGGGGGCGGC
GAAAGGGAGCGCGGGCCCCTGGTGGAAGAGGAGCTGGAGGAGGAAACGGG
GGAGAAGCCGGGGTTGGTGGAGGTGGCCAGGACAGCCCCCGAGGAGGGCG
ACGGAGGTACGACCAGCGGCAGGGGCTGAAGGGACACGATCGTGGAGTCG
TACTGGCGCACCAGGTCCCGGTGAGTTCGGATGCGGACGATGCCGAGGAA
GGTGAGGCCATGCCTGTCCGTGCACTTGAGCACCATGTGTCGGTCCTCCA
GGGCGTTGGTGGATCGGAATGTTAGCGCCAGCAGCTCTTCTAGCAGTCGC
TGCCGGTCCTCGGGCGCGACCAATCCTGCCAGCAGGAAGGCAAAGGGCAA
CTTCTCGCCCCACAGTCGCTCAAGCGCCTCCTTGGCTCCCATGAAGGTCT
CCTCGAAGCGGCCGTTGGCCGTGACGCGCTCCACGCCCTCCTTCATGTCC
GACACATGCAGTGCCACTGCCGAGGTCCAGTCGTCCAGGACGGCCAAGAA
GGGATGCACGGGGGGCAAGGGCGTGGGCGCCTGTGTAGCCCGCTGCAGTG
GCGTCTCCGGCCCCCCGCCCAGCGCGGCCTCTTTCAAAGCCACTTCCGAG
AGCGCTGTCAGGCCCATGAATTTCTCGAGCAGACCCCGTGAGCGGTCCGT
GCCCCAGCAACTCTGCATCAGAAACCAGTGCTGGAGCACGCGGGTTACCA
CGTCTTCCCGCAGCACGCCCTCTGCACCCCACCGCCGAAAGATGCTCTCG
GCCAGAGTCGCCACTTGAGAGCCCAGGAGCTGCTGTTGGTGCTTATACTG
CTGCTGCCGTGCTGCCACTGCCGCTGCCGTCGCCGCTGCCAATACTTGCG
CATTTTTTTCTACTACCGACACCACAGGACCATGCCCACCATCTGCTCCC
TCATCCATTCCCACTCCCGGCGGGTTTCCCATTCCCAGGGCGGCACCGGG
GATTTGCTTGGCACCCCCGAGCTTCCGGACCCTCTTCTTCCCAACAGCTG
AGGCTGCAGCAGTTGCCGGCACAGCGGTCGCATCAGTCGTGGGATCGCTG
GAGGATGAGGCTGCGGGACTTGGAGTCATAATGGTGGAGACAGCGCCGTC
GTTCAAACCCCCACCAACCTGCTGCTGGTCCTGATTGTGGTGCGGCGAGT
GCAGGATGGGCACCTGGGAATACAACTGCTCCTGCTCTTGCTGTTGCTGT
TGCTGCTCCTGCACGTGATAGGGAAGATGCACACCGCTGCTTTGTCCGTA
CATGAGGCGCGAGCTTTGCGACGAGACGTCTATATGCACAACACGTCCTC
TGCGAAATCCTACTTCTCCCGCCCCCCTCCTTGTGCCCTAGGTCCTCGCT
TCCCAGTCCTTTCCACCGCCTGCCCGAGGACGAACTGACCCTACGACACC
TGTGGTGTGTTATGTGGTGGAGGTTGTGAATGGACGTTCCCCGGTGTTAT
CATTGACAAACTTTCTACTGGCTGCAAGACGCAAGACGGCAATAGGGGAG
GGGAAAAACCTCCCGAGGTCGCATGAACGATTACAATATCAAAAGCTTAT
ATTTCCAAGAGGCGGAAAGGTGGCGCGATGGGCAAATATGGAAATTTTTT
ACATCCTCCTCTGCCGGGTAAGGCCGCTCTCGCGTGTGACGCTGCGCCGC
TTGCTTCTTGTTCCTCTTCTCGCGCTCCTATCTTGCACTAGGCAAGCCGG
AACTGATGAGGAAAACCTCACCCAAAGCACTGAGAGAAGGCGTAGCGAGA
CTTCTTGCGTACTCTACGTATCGTCTGTT

protein sequence of jgi.p|Nanoce1779_2|601610

>mRNA_8327-protein ID=mRNA_8327-protein|Name=jgi.p|Nanoce1779_2|601610|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MRTMPRKVRPCLSVHLSTMCRSSRALVDRNVSASSSSSSRCRSSGATNPA
SRKAKGNFSPHSRSSASLAPMKVSSKRPLAVTRSTPSFMSDTCSATAEVQ
SSRTAKKGCTGGKGVGACVARCSGVSGPPPSAASFKATSESAVRPMNFSS
RPRERSVPQQLCIRNQCWSTRVTTSSRSTPSAPHRRKMLSARVAT*

mRNA from alignment at scaffold_23:376079..378357+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8327 ID=mRNA_8327|Name=jgi.p|Nanoce1779_2|601610|organism=Nannochloropsis oceanica|type=mRNA|length=2279bp|location=Sequence derived from alignment at scaffold_23:376079..378357+ (Nannochloropsis oceanica)
GCTGCTGCTGCTGCTGCTGCTGCTTCTGCCGCTGCTGGGCTTGATGGTGC
TGTTCGTTTTTGTGTGCAAGAGGCGCAGTTGAGGCCCCGGAAGACGCTTG
AGTAAAGATGCGTTTGGTCACGCCGCTGCTGCCCTCCACCAGGGACGGAG
AGACAGCTGACGGCGTGTAGCGCTGAAGCGGCTGGATGCGCAGCACCTGC
GGCAAGGGCGGCACGGATGCTTGCTGTTGTTGCTGCTGCTGTTGTGACGC
ATTCAGCACGCCTGTCCCCTCGCCTGGAAGCGGACGCACGCCCAAGACGC
GCGAGCCCTCCACGTACAGCGCCGTGCCTGTCGTGAGCGTGCGCAGCCCC
CATCCGTCTCCACGGACCAAGCCGCCGCCCCACCGCTCTAGCACCAACAC
ACGCCCGCTCGTGTCTTGCGCCAGAGTCAGCTCCGCGTATCGCCACCGGC
CTCCGTCGCGCGTCGGCCGCCAGCTCAAGACGGGCTTGGGCGGGGGCGGC
GAAAGGGAGCGCGGGCCCCTGGTGGAAGAGGAGCTGGAGGAGGAAACGGG
GGAGAAGCCGGGGTTGGTGGAGGTGGCCAGGACAGCCCCCGAGGAGGGCG
ACGGAGGTACGACCAGCGGCAGGGGCTGAAGGGACACGATCGTGGAGTCG
TACTGGCGCACCAGGTCCCGGTGAGTTCGGATGCGGACGATGCCGAGGAA
GGTGAGGCCATGCCTGTCCGTGCACTTGAGCACCATGTGTCGGTCCTCCA
GGGCGTTGGTGGATCGGAATGTTAGCGCCAGCAGCTCTTCTAGCAGTCGC
TGCCGGTCCTCGGGCGCGACCAATCCTGCCAGCAGGAAGGCAAAGGGCAA
CTTCTCGCCCCACAGTCGCTCAAGCGCCTCCTTGGCTCCCATGAAGGTCT
CCTCGAAGCGGCCGTTGGCCGTGACGCGCTCCACGCCCTCCTTCATGTCC
GACACATGCAGTGCCACTGCCGAGGTCCAGTCGTCCAGGACGGCCAAGAA
GGGATGCACGGGGGGCAAGGGCGTGGGCGCCTGTGTAGCCCGCTGCAGTG
GCGTCTCCGGCCCCCCGCCCAGCGCGGCCTCTTTCAAAGCCACTTCCGAG
AGCGCTGTCAGGCCCATGAATTTCTCGAGCAGACCCCGTGAGCGGTCCGT
GCCCCAGCAACTCTGCATCAGAAACCAGTGCTGGAGCACGCGGGTTACCA
CGTCTTCCCGCAGCACGCCCTCTGCACCCCACCGCCGAAAGATGCTCTCG
GCCAGAGTCGCCACTTGAGAGCCCAGGAGCTGCTGTTGGTGCTTATACTG
CTGCTGCCGTGCTGCCACTGCCGCTGCCGTCGCCGCTGCCAATACTTGCG
CATTTTTTTCTACTACCGACACCACAGGACCATGCCCACCATCTGCTCCC
TCATCCATTCCCACTCCCGGCGGGTTTCCCATTCCCAGGGCGGCACCGGG
GATTTGCTTGGCACCCCCGAGCTTCCGGACCCTCTTCTTCCCAACAGCTG
AGGCTGCAGCAGTTGCCGGCACAGCGGTCGCATCAGTCGTGGGATCGCTG
GAGGATGAGGCTGCGGGACTTGGAGTCATAATGGTGGAGACAGCGCCGTC
GTTCAAACCCCCACCAACCTGCTGCTGGTCCTGATTGTGGTGCGGCGAGT
GCAGGATGGGCACCTGGGAATACAACTGCTCCTGCTCTTGCTGTTGCTGT
TGCTGCTCCTGCACGTGATAGGGAAGATGCACACCGCTGCTTTGTCCGTA
CATGAGGCGCGAGCTTTGCGACGAGACGTCTATATGCACAACACGTCCTC
TGCGAAATCCTACTTCTCCCGCCCCCCTCCTTGTGCCCTAGGTCCTCGCT
TCCCAGTCCTTTCCACCGCCTGCCCGAGGACGAACTGACCCTACGACACC
TGTGGTGTGTTATGTGGTGGAGGTTGTGAATGGACGTTCCCCGGTGTTAT
CATTGACAAACTTTCTACTGGCTGCAAGACGCAAGACGGCAATAGGGGAG
GGGAAAAACCTCCCGAGGTCGCATGAACGATTACAATATCAAAAGCTTAT
ATTTCCAAGAGGCGGAAAGGTGGCGCGATGGGCAAATATGGAAATTTTTT
ACATCCTCCTCTGCCGGGTAAGGCCGCTCTCGCGTGTGACGCTGCGCCGC
TTGCTTCTTGTTCCTCTTCTCGCGCTCCTATCTTGCACTAGGCAAGCCGG
AACTGATGAGGAAAACCTCACCCAAAGCACTGAGAGAAGGCGTAGCGAGA
CTTCTTGCGTACTCTACGTATCGTCTGTT

Coding sequence (CDS) from alignment at scaffold_23:376079..378357+

>mRNA_8327 ID=mRNA_8327|Name=jgi.p|Nanoce1779_2|601610|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_23:376079..378357+ (Nannochloropsis oceanica)
ATGCGGACGATGCCGAGGAAGGTGAGGCCATGCCTGTCCGTGCACTTGAG
CACCATGTGTCGGTCCTCCAGGGCGTTGGTGGATCGGAATGTTAGCGCCA
GCAGCTCTTCTAGCAGTCGCTGCCGGTCCTCGGGCGCGACCAATCCTGCC
AGCAGGAAGGCAAAGGGCAACTTCTCGCCCCACAGTCGCTCAAGCGCCTC
CTTGGCTCCCATGAAGGTCTCCTCGAAGCGGCCGTTGGCCGTGACGCGCT
CCACGCCCTCCTTCATGTCCGACACATGCAGTGCCACTGCCGAGGTCCAG
TCGTCCAGGACGGCCAAGAAGGGATGCACGGGGGGCAAGGGCGTGGGCGC
CTGTGTAGCCCGCTGCAGTGGCGTCTCCGGCCCCCCGCCCAGCGCGGCCT
CTTTCAAAGCCACTTCCGAGAGCGCTGTCAGGCCCATGAATTTCTCGAGC
AGACCCCGTGAGCGGTCCGTGCCCCAGCAACTCTGCATCAGAAACCAGTG
CTGGAGCACGCGGGTTACCACGTCTTCCCGCAGCACGCCCTCTGCACCCC
ACCGCCGAAAGATGCTCTCGGCCAGAGTCGCCACTTGA

Synonyms

Publications