jgi.p|Nanoce1779_2|601594, mRNA_8326 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601594
Unique NamemRNA_8326
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1751
Alignment locationscaffold_23:370546..372735 -

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Properties
Property NameValue
TranscriptId601680
TrackFilteredModels2
ProteinId601594
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:370546..372735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601594gene_8326Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601594mRNA_8326-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8326CDS_8326Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8326 ID=mRNA_8326|Name=jgi.p|Nanoce1779_2|601594|organism=Nannochloropsis oceanica|type=mRNA|length=1751bp
CAACAGGATCTGGTCTCGTCGTCTCCGGTTCTGTGCATTGTTGGACCGGC
GGCTTGCCAGACAAGGAGCTGTCGGGGCACAGGAGAGGTAGCTAAGCAAA
CTGAAAGCGCGGAGCTTCCATTCCCGAGTCGGTCGCAGCGCCACAATTGG
GCAGCAACATAGAAGAGAATAGCAAAGTAAAATGTCTCTGCTGCGGAGAG
TCCGGCTGCGCGTGCCCGCGGGGACGGCCAAGCCGGGGCCAGCCATCGGA
CAGGCACTAGGTCCTCTCGGGCTGAACATGATGGAGTTTTGCAAGGCTTT
CAACGCCGAGACGGCGGCCATCATCCCCAACACGCCCATGCAGGTGTCCT
TAGCAGCCTACTCAAACCGGACGTTCACTTTCAAGATCAAAAGCCCACCC
ACGTCCTGGTTCCTCAAGCGTTGCGCCGCAGTGGAGAAGGGTGCGGGCAA
AACGGTGCACGAGATGGTGGGCTCGGTTCATGTGAAGCACATTTATGAAA
TTGCCAAGGTCAAGCAAAAGGATTACCATCTCAGTCATTTACCGCTCCGC
TCTATTTGCCGCATGATATTTGGGACGTGTGGGACCATGGGGTTAAAGGT
AGACGGTCTTAAGGACGCTCCACCCGTATAAGGGGCACCGAGGCATCAGC
ACCATCAGTACTCTTAAAAGAAGGAATATAAACAAATTACGCTTAGTTTT
CTCAGGGCGAGGGTTTTGTGCTATCATTTTCCCGCCAACTTCGTGTCATT
TTGTGTGCAGAGCTGAGTTGATCAACGAGCGACAGAGGGCGGGCCCTACG
TGTGTTACACACGTGTGTAACGTGGGGACTTGGATAGGGTAGGGAGCTAA
GGTGCGTGTCATATTCAGCGGGAAGAGAAAAAGTGGACCGGGCACGGGAA
TGATTGATTGTGAAATCGATTATGACCTGGTTGAGCCTCCAGTATACCGA
AATTTGTTATGGGTACGAAAAACCTCCCTCCCATCTACGCTCCTGCTGTT
TCCCAAGACATGTCTTCGGCCTTGGAAAAATCGACTCTCAGAGCCGCCCC
GCCACAATCCAAAAACAATTTATCTCCGTCCCTCCAACGATATGCATACC
GTAGATCGAAACTTTCCAGTCGAGCGTAGAAGTGCCGTGGGCGCTGTAGG
CGACGCAACTACCAACACATCAACATGGCCACCAAGACACGCCCTCTAGC
CACGGTCAACAGAAAAAGAAGACAGCGTACCACGCCCAGGCCGCTCGAGG
TGCATGTCGTGGAGGACCATGCGGATGCCCTTGAACATCTTTACAATTCC
ATTGGGGCAAAGCGCACGCCCTTCTCCAACCTAAAATGGGTCCATTTCGA
CAGCCATCCCGACTTGACACTGCCTCGGGCTCTAACTGCCTCCACCGTGA
GGGATCCGGAGGCGCTGTATGAAGTCCTCTTCGAGTCCGAAGGTGGGAAT
GCCGAATTCATCTTGCCTGCCGTTTTTGCTGGTCATGTTACAAAGGTGGC
CTGGGTACGACCGCCGTGGGCACGACAGCTCCCAGATGGCTTGTATAACT
TTCATGTAGGCGTGGAAAAGGCTAGCTCCTGCCTGCGCGTGACCCTGCCT
GCAGTCTACTACCTGGACGAGGACTTGCACTGTACATTGCAAGACATGGA
GCCCGGCAGTATTTCGACCTTAGAGCTGCGCGTATGCCCAATAGAAGACA
TCGAGACACTTGTAAATGATAGTTCCGCAGCGAAGGGGATGGATGGGTGG
C
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protein sequence of jgi.p|Nanoce1779_2|601594

>mRNA_8326-protein ID=mRNA_8326-protein|Name=jgi.p|Nanoce1779_2|601594|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MSLLRRVRLRVPAGTAKPGPAIGQALGPLGLNMMEFCKAFNAETAAIIPN
TPMQVSLAAYSNRTFTFKIKSPPTSWFLKRCAAVEKGAGKTVHEMVGSVH
VKHIYEIAKVKQKDYHLSHLPLRSICRMIFGTCGTMGLKVDGLKDAPPV*
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mRNA from alignment at scaffold_23:370546..372735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8326 ID=mRNA_8326|Name=jgi.p|Nanoce1779_2|601594|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at scaffold_23:370546..372735- (Nannochloropsis oceanica)
CAACAGGATCTGGTCTCGTCGTCTCCGGTTCTGTGCATTGTTGGACCGGC
GGCTTGCCAGACAAGGAGCTGTCGGGGCACAGGAGAGGTAGCTAAGCAAA
CTGAAAGCGCGGAGCTTCCATTCCCGAGTCGGTCGCAGCGCCACAATTGG
GCAGCAACATAGAAGAGAATAGCAAAGTAAAATGTCTCTGCTGCGGAGAG
TCCGGCTGCGCGTGCCCGCGGGGACGGCCAAGCCGGGGCCAGCCATCGGA
CAGGTCTGTCACACAGAGGGACAGGGGGAGAGGGAGCGAGAGAGGCGACC
TGCTTCATTTTCAATCTCACACGTAAAATTGTTTAAGTCAGAATTCTAAC
TCATCTCTCACCAACAGGCACTAGGTCCTCTCGGGCTGAACATGATGGAG
TTTTGCAAGGCTTTCAACGCCGAGACGGCGGCCATCATCCCCAACACGCC
CATGCAGGTACTAAGGTGGCAGCAGTGATTGTGGCGTAGGGTATTTTGTT
CTGTGTGACAGTGCACGATATGGGGATGTGTTGGACAGATTCAGGCCCCC
GGCTCAGCTGTATTTTCATCTCACACATGCGCATGCGCTCCCTCATTCCT
GCTCTGTCGTCACACAGGTGTCCTTAGCAGCCTACTCAAACCGGACGTTC
ACTTTCAAGATCAAAAGCCCACCCACGTCCTGGTTCCTCAAGGTACGTGC
ATGCAAAGTATTGTTGTCCTATCTCTTGTGCCGTTGTGTAGCGAGCTCAA
TCCATTGACATTCCTTCTGCCCCACCCTCACTCACTAGCGTTGCGCCGCA
GTGGAGAAGGGTGCGGGCAAAACGGTGCACGAGATGGTGGGCTCGGTTCA
TGTGAAGCACATTTATGAAATTGCCAAGGTCAAGCAAAAGGATTACCATC
TCAGTCATTTACCGCTCCGCTCTATTTGCCGCATGATATTTGGGACGTGT
GGGACCATGGGGTTAAAGGTAGACGGTCTTAAGGACGCTCCACCCGTATA
AGGGGCACCGAGGCATCAGCACCATCAGTACTCTTAAAAGAAGGAATATA
AACAAATTACGCTTAGTTTTCTCAGGGCGAGGGTTTTGTGCTATCATTTT
CCCGCCAACTTCGTGTCATTTTGTGTGCAGAGCTGAGTTGATCAACGAGC
GACAGAGGGCGGGCCCTACGTGTGTTACACACGTGTGTAACGTGGGGACT
TGGATAGGGTAGGGAGCTAAGGTGCGTGTCATATTCAGCGGGAAGAGAAA
AAGTGGACCGGGCACGGGAATGATTGATTGTGAAATCGATTATGACCTGG
TTGAGCCTCCAGTATACCGAAATTTGTTATGGGTACGAAAAACCTCCCTC
CCATCTACGCTCCTGCTGTTTCCCAAGACATGTCTTCGGCCTTGGAAAAA
TCGACTCTCAGAGCCGCCCCGCCACAATCCAAAAACAATTTATCTCCGTC
CCTCCAACGATATGCATACCGTAGATCGAAACTTTCCAGTCGAGCGTAGA
AGTGCCGTGGGCGCTGTAGGCGACGCAACTACCAACACATCAACATGGCC
ACCAAGACACGCCCTCTAGCCACGGTCAACAGAAAAAGAAGACAGCGTAC
CACGCCCAGGCCGCTCGAGGTGCATGTCGTGGAGGACCATGCGGATGCCC
TTGAACATCTTTACAATTCCATTGGGGTGAGTGGAGAGAAATCCGTTGCC
TCCTACATGCCTCTCACACACCCCATCCCACTGCATGGCACACAGGCAAA
GCGCACGCCCTTCTCCAACCTAAAATGGGTCCATTTCGACAGCCATCCCG
ACTTGACACTGCCTCGGGCTCTAACTGCCTCCACCGTGAGGGATCCGGAG
GCGCTGTATGAAGTCCTCTTCGAGTCCGAAGGTGGGAATGCCGAATTCAT
CTTGCCTGCCGTTTTTGCTGGTCATGTTACAAAGGTGGCCTGGGTACGAC
CGCCGTGGGCACGACAGCTCCCAGATGGCTTGTATAACTTTCATGTAGGC
GTGGAAAAGGCTAGCTCCTGCCTGCGCGTGACCCTGCCTGCAGTCTACTA
CCTGGACGAGGACTTGCACTGTACATTGCAAGACATGGAGCCCGGCAGTA
TTTCGACCTTAGAGCTGCGCGTATGCCCAATAGAAGACATCGAGACACTT
GTAAATGATAGTTCCGCAGCGAAGGGGATGGATGGGTGGC
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Coding sequence (CDS) from alignment at scaffold_23:370546..372735-

>mRNA_8326 ID=mRNA_8326|Name=jgi.p|Nanoce1779_2|601594|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_23:370546..372735- (Nannochloropsis oceanica)
CGTTGCGCCGCAGTGGAGAAGGGTGCGGGCAAAACGGTGCACGAGATGGT
GGGCTCGGTTCATGTGAAGCACATTTATGAAATTGCCAAGGTCAAGCAAA
AGGATTACCATCTCAGTCATTTACCGCTCCGCTCTATTTGCCGCATGATA
TTTGGGACGTGTGGGACCATGGGGTTAAAGGTAGACGGTCTTAAGGACGC
TCCACCCGTATAAGTGTCCTTAGCAGCCTACTCAAACCGGACGTTCACTT
TCAAGATCAAAAGCCCACCCACGTCCTGGTTCCTCAAGGCACTAGGTCCT
CTCGGGCTGAACATGATGGAGTTTTGCAAGGCTTTCAACGCCGAGACGGC
GGCCATCATCCCCAACACGCCCATGCAGATGTCTCTGCTGCGGAGAGTCC
GGCTGCGCGTGCCCGCGGGGACGGCCAAGCCGGGGCCAGCCATCGGACAG
CGTTGCGCCGCAGTGGAGAAGGGTGCGGGCAAAACGGTGCACGAGATGGT
GGGCTCGGTTCATGTGAAGCACATTTATGAAATTGCCAAGGTCAAGCAAA
AGGATTACCATCTCAGTCATTTACCGCTCCGCTCTATTTGCCGCATGATA
TTTGGGACGTGTGGGACCATGGGGTTAAAGGTAGACGGTCTTAAGGACGC
TCCACCCGTATAAGTGTCCTTAGCAGCCTACTCAAACCGGACGTTCACTT
TCAAGATCAAAAGCCCACCCACGTCCTGGTTCCTCAAGGCACTAGGTCCT
CTCGGGCTGAACATGATGGAGTTTTGCAAGGCTTTCAACGCCGAGACGGC
GGCCATCATCCCCAACACGCCCATGCAGATGTCTCTGCTGCGGAGAGTCC
GGCTGCGCGTGCCCGCGGGGACGGCCAAGCCGGGGCCAGCCATCGGACAG
CGTTGCGCCGCAGTGGAGAAGGGTGCGGGCAAAACGGTGCACGAGATGGT
GGGCTCGGTTCATGTGAAGCACATTTATGAAATTGCCAAGGTCAAGCAAA
AGGATTACCATCTCAGTCATTTACCGCTCCGCTCTATTTGCCGCATGATA
TTTGGGACGTGTGGGACCATGGGGTTAAAGGTAGACGGTCTTAAGGACGC
TCCACCCGTATAAGTGTCCTTAGCAGCCTACTCAAACCGGACGTTCACTT
TCAAGATCAAAAGCCCACCCACGTCCTGGTTCCTCAAGGCACTAGGTCCT
CTCGGGCTGAACATGATGGAGTTTTGCAAGGCTTTCAACGCCGAGACGGC
GGCCATCATCCCCAACACGCCCATGCAGATGTCTCTGCTGCGGAGAGTCC
GGCTGCGCGTGCCCGCGGGGACGGCCAAGCCGGGGCCAGCCATCGGACAG
CGTTGCGCCGCAGTGGAGAAGGGTGCGGGCAAAACGGTGCACGAGATGGT
GGGCTCGGTTCATGTGAAGCACATTTATGAAATTGCCAAGGTCAAGCAAA
AGGATTACCATCTCAGTCATTTACCGCTCCGCTCTATTTGCCGCATGATA
TTTGGGACGTGTGGGACCATGGGGTTAAAGGTAGACGGTCTTAAGGACGC
TCCACCCGTATAAGTGTCCTTAGCAGCCTACTCAAACCGGACGTTCACTT
TCAAGATCAAAAGCCCACCCACGTCCTGGTTCCTCAAGGCACTAGGTCCT
CTCGGGCTGAACATGATGGAGTTTTGCAAGGCTTTCAACGCCGAGACGGC
GGCCATCATCCCCAACACGCCCATGCAGATGTCTCTGCTGCGGAGAGTCC
GGCTGCGCGTGCCCGCGGGGACGGCCAAGCCGGGGCCAGCCATCGGACAG
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Synonyms
Publications