jgi.p|Nanoce1779_2|190212, mRNA_8322 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|190212
Unique NamemRNA_8322
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1785
Alignment locationscaffold_23:362179..364083 -

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Properties
Property NameValue
TranscriptId190298
TrackFilteredModels2
ProteinId190212
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:362179..364083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|190212gene_8322Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|190212mRNA_8322-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8322CDS_8322Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8322 ID=mRNA_8322|Name=jgi.p|Nanoce1779_2|190212|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp
CCCTTCCCGCGCACCAATACACCACCACCATACAGAGTATAGCCATCATC
ATCCACCAGCAACTTACACTATGCGTTCTATGAAGTTCAGCTTCGTGTGC
TCCCTGGCCCTGTTTGCTGCCTCAGCCCTGGCCGCCGAGGACGGCGTCTA
CACTCCTAACGACCTGGAGGGTGCCCCGATTACGCTTCCTCCCACCGCCG
CCCCCACCAAATCCGTCTACACCCCTCCTCCGACACCTGCACCCACTAAG
GCCGCCTACACGGATCAACCTGTTGTAGAACCTGAGCCTGCTGATGCACC
CACCGCTGCCATCACTTTAGCCCCGACCGAGAGCCCGACAGGAGTTCCCA
CTCCTTCGCCCACGAATGCCCCTACTGAGGCGCCCACTGCGGCTCCCACG
AACGCCCCCACGGCAGTTCCCACGGCAGCCCCCACCGCAGCCCCCACGGC
AGCCCCCACGGCAGCCCCCACGGCAGCCCCCACCGAGGCTCCTACGAATG
CCCCCACGGCGACTCCCACGGCAGCCCCCACGAACGCTCCGACAGCCTTC
CCCACGGCCGCCCCCACCAAGCCTGTGTACACGCCTCCGCCTACATCTGC
GCCCACTGAGTCCCCGACAGCCTTCCCCACGGCCGCTCCCACTGAGGCCC
CGACAGCCTCCCCCACGGCCGCCCCGACCAAGCCCGTCTACACTCCTCCT
CCGACGGCCGCACCCACGGAGGCCCCCACGGCCGTCCCGACTGAGGCTCC
CACGGCTGCACCCACTGAAGCTCCGACGGCTGCTCCCACGGCTGCCCCCA
CGGCTGCTCCCACGGCTGCTCCCACGGTTGCGCCCACAGAAGCTATCGGT
ACCTTAGATGCGCCGGAAGAAAACGTGTACACGCCCCCGCCCTACACCTC
CAAGCCCTCCGAACAGGAAGCGGGCGCCAGCAATGGCCGCCGTCTTCGAC
GAGGCAGTGCCTAAACAATTATTCCCCACCGTCTCGATTGACTAGTTCCC
TCTTGCGCCTGTCTCTGGCCAGGCCTGTAACTAGGTGCCCTATCTATTGA
GGCGGCGTGTCTGGAGGAGAGGTCGAGTGGCGGGTGTTGGAGAGTTCCGA
GGAATATTATGCACTTTGAGCAAAAGAGAGAAGCAGTACGAACGCAGCAG
AAAAAGACCAGAACAGGGGAGAAAGGATCAACAGCTAAGGGAAGAATGAT
GTACACGGATTGGAGAGGGAAAGGGACGAAATAGTAAAAGGACATTAAAA
CACAACCGGGGAATTGGAGTGATGGACGAAGTAAGTGGGTTAGAAAAGTT
GTGTCACCGGACTTGATGGGAAGAGTACGTCCCCGCTAGATGTGTGTGTG
ATAATGTACAATCCCTTGTACAATTATTATTGTTGTCATTATAATTATTG
TCATTATTATTGTTGTCATTATTATAACATTTGATTCATCCCAAGTCTTG
GACCGACGGCGGATGATGATCAGTGACGTATGCGCTCCGGCAAGACTTAG
CTAGGACGCGTTGGCCATGTTCTATCGATGGACACGATGTGGGACATGGA
AGGCCTACTGGGGAAGCCACACAAGAGCAAGCATCAGTCGAAGAAAGTAG
AGAAGAAAACAAAGCAAGGACAGGGGAATGCACTGTCTCTTCTTCCAAGA
AGATACTATCATCATGGTGTGATATAGAGTCGTCTTTTTGTTCGAAAAGT
ACCAGGTCAGTGAACCAAAGAATCAAAAACGTGACGAATTAAGGAGTAAG
TGTCCAATTCCTATTGTTTTCGAGCCGCTGACTAG
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protein sequence of jgi.p|Nanoce1779_2|190212

>mRNA_8322-protein ID=mRNA_8322-protein|Name=jgi.p|Nanoce1779_2|190212|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MRSMKFSFVCSLALFAASALAAEDGVYTPNDLEGAPITLPPTAAPTKSVY
TPPPTPAPTKAAYTDQPVVEPEPADAPTAAITLAPTESPTGVPTPSPTNA
PTEAPTAAPTNAPTAVPTAAPTAAPTAAPTAAPTAAPTEAPTNAPTATPT
AAPTNAPTAFPTAAPTKPVYTPPPTSAPTESPTAFPTAAPTEAPTASPTA
APTKPVYTPPPTAAPTEAPTAVPTEAPTAAPTEAPTAAPTAAPTAAPTAA
PTVAPTEAIGTLDAPEENVYTPPPYTSKPSEQEAGASNGRRLRRGSA*
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mRNA from alignment at scaffold_23:362179..364083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8322 ID=mRNA_8322|Name=jgi.p|Nanoce1779_2|190212|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp|location=Sequence derived from alignment at scaffold_23:362179..364083- (Nannochloropsis oceanica)
CCCTTCCCGCGCACCAATACACCACCACCATACAGAGTATAGCCATCATC
ATCCACCAGCAACTTACACTATGCGTTCTATGAAGTTCAGCTTCGTGTGC
TCCCTGGCCCTGTTTGCTGCCTCAGCCCTGGCCGCCGAGGACGGCGTCTA
CACTCCTAACGACCTGGAGGGTGCCCCGATTACGCTTCCTCCCACCGCCG
CCCCCACCAAATCCGTCTACACCCCTCCTCCGACACCTGCACCCACTAAG
GCCGCCTACACGGATCAACCTGTTGTAGAACCTGAGCCTGCTGATGCACC
CACCGCTGCCATCACTTTAGCCCCGACCGAGAGCCCGACAGGAGTTCCCA
CTCCTTCGCCCACGAATGCCCCTACTGAGGCGCCCACTGCGGCTCCCACG
AACGCCCCCACGGCAGTTCCCACGGCAGCCCCCACCGCAGCCCCCACGGC
AGCCCCCACGGCAGCCCCCACGGCAGCCCCCACCGAGGCTCCTACGAATG
CCCCCACGGCGACTCCCACGGCAGCCCCCACGAACGCTCCGACAGCCTTC
CCCACGGCCGCCCCCACCAAGCCTGTGTACACGCCTCCGCCTACATCTGC
GCCCACTGAGTCCCCGACAGCCTTCCCCACGGCCGCTCCCACTGAGGCCC
CGACAGCCTCCCCCACGGCCGCCCCGACCAAGCCCGTCTACACTCCTCCT
CCGACGGCCGCACCCACGGAGGCCCCCACGGCCGTCCCGACTGAGGCTCC
CACGGCTGCACCCACTGAAGCTCCGACGGCTGCTCCCACGGCTGCCCCCA
CGGCGACTCCCACGGCTGCTCCCACGGCCGCGCCCACTGAGGCCCCCACG
GCTGCTCCCACGGCTGCTCCCACGGCTGCTCCCACGGCCGCACCCACCTC
CGCGCCCACTGAGGCCCCCACGGCTGCTCCCACGGCTGCTCCCACGGTTG
CGCCCACAGAAGCTATCGGTACCTTAGATGCGCCGGAAGAAAACGTGTAC
ACGCCCCCGCCCTACACCTCCAAGCCCTCCGAACAGGAAGCGGGCGCCAG
CAATGGCCGCCGTCTTCGACGAGGCAGTGCCTAAACAATTATTCCCCACC
GTCTCGATTGACTAGTTCCCTCTTGCGCCTGTCTCTGGCCAGGCCTGTAA
CTAGGTGCCCTATCTATTGAGGCGGCGTGTCTGGAGGAGAGGTCGAGTGG
CGGGTGTTGGAGAGTTCCGAGGAATATTATGCACTTTGAGCAAAAGAGAG
AAGCAGTACGAACGCAGCAGAAAAAGACCAGAACAGGGGAGAAAGGATCA
ACAGCTAAGGGAAGAATGATGTACACGGATTGGAGAGGGAAAGGGACGAA
ATAGTAAAAGGACATTAAAACACAACCGGGGAATTGGAGTGATGGACGAA
GTAAGTGGGTTAGAAAAGTTGTGTCACCGGACTTGATGGGAAGAGTACGT
CCCCGCTAGATGTGTGTGTGATAATGTACAATCCCTTGTACAATTATTAT
TGTTGTCATTATAATTATTGTCATTATTATTGTTGTCATTATTATAACAT
TTGATTCATCCCAAGTCTTGGACCGACGGCGGATGATGATCAGTGACGTA
TGCGCTCCGGCAAGACTTAGCTAGGACGCGTTGGCCATGTTCTATCGATG
GACACGATGTGGGACATGGAAGGCCTACTGGGGAAGCCACACAAGAGCAA
GCATCAGTCGAAGAAAGTAGAGAAGAAAACAAAGCAAGGACAGGGGAATG
CACTGTCTCTTCTTCCAAGAAGATACTATCATCATGGTGTGATATAGAGT
CGTCTTTTTGTTCGAAAAGTACCAGGTCAGTGAACCAAAGAATCAAAAAC
GTGACGAATTAAGGAGTAAGTGTCCAATTCCTATTGTTTTCGAGCCGCTG
ACTAG
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Coding sequence (CDS) from alignment at scaffold_23:362179..364083-

>mRNA_8322 ID=mRNA_8322|Name=jgi.p|Nanoce1779_2|190212|organism=Nannochloropsis oceanica|type=CDS|length=1788bp|location=Sequence derived from alignment at scaffold_23:362179..364083- (Nannochloropsis oceanica)
GCCCCCACGGCTGCTCCCACGGCTGCTCCCACGGTTGCGCCCACAGAAGC
TATCGGTACCTTAGATGCGCCGGAAGAAAACGTGTACACGCCCCCGCCCT
ACACCTCCAAGCCCTCCGAACAGGAAGCGGGCGCCAGCAATGGCCGCCGT
CTTCGACGAGGCAGTGCCTAAATGCGTTCTATGAAGTTCAGCTTCGTGTG
CTCCCTGGCCCTGTTTGCTGCCTCAGCCCTGGCCGCCGAGGACGGCGTCT
ACACTCCTAACGACCTGGAGGGTGCCCCGATTACGCTTCCTCCCACCGCC
GCCCCCACCAAATCCGTCTACACCCCTCCTCCGACACCTGCACCCACTAA
GGCCGCCTACACGGATCAACCTGTTGTAGAACCTGAGCCTGCTGATGCAC
CCACCGCTGCCATCACTTTAGCCCCGACCGAGAGCCCGACAGGAGTTCCC
ACTCCTTCGCCCACGAATGCCCCTACTGAGGCGCCCACTGCGGCTCCCAC
GAACGCCCCCACGGCAGTTCCCACGGCAGCCCCCACCGCAGCCCCCACGG
CAGCCCCCACGGCAGCCCCCACGGCAGCCCCCACCGAGGCTCCTACGAAT
GCCCCCACGGCGACTCCCACGGCAGCCCCCACGAACGCTCCGACAGCCTT
CCCCACGGCCGCCCCCACCAAGCCTGTGTACACGCCTCCGCCTACATCTG
CGCCCACTGAGTCCCCGACAGCCTTCCCCACGGCCGCTCCCACTGAGGCC
CCGACAGCCTCCCCCACGGCCGCCCCGACCAAGCCCGTCTACACTCCTCC
TCCGACGGCCGCACCCACGGAGGCCCCCACGGCCGTCCCGACTGAGGCTC
CCACGGCTGCACCCACTGAAGCTCCGACGGCTGCTCCCACGGCTGCCCCC
ACGGCTGCTCCCACGGCTGCTCCCACGGTTGCGCCCACAGAAGCTATCGG
TACCTTAGATGCGCCGGAAGAAAACGTGTACACGCCCCCGCCCTACACCT
CCAAGCCCTCCGAACAGGAAGCGGGCGCCAGCAATGGCCGCCGTCTTCGA
CGAGGCAGTGCCTAAATGCGTTCTATGAAGTTCAGCTTCGTGTGCTCCCT
GGCCCTGTTTGCTGCCTCAGCCCTGGCCGCCGAGGACGGCGTCTACACTC
CTAACGACCTGGAGGGTGCCCCGATTACGCTTCCTCCCACCGCCGCCCCC
ACCAAATCCGTCTACACCCCTCCTCCGACACCTGCACCCACTAAGGCCGC
CTACACGGATCAACCTGTTGTAGAACCTGAGCCTGCTGATGCACCCACCG
CTGCCATCACTTTAGCCCCGACCGAGAGCCCGACAGGAGTTCCCACTCCT
TCGCCCACGAATGCCCCTACTGAGGCGCCCACTGCGGCTCCCACGAACGC
CCCCACGGCAGTTCCCACGGCAGCCCCCACCGCAGCCCCCACGGCAGCCC
CCACGGCAGCCCCCACGGCAGCCCCCACCGAGGCTCCTACGAATGCCCCC
ACGGCGACTCCCACGGCAGCCCCCACGAACGCTCCGACAGCCTTCCCCAC
GGCCGCCCCCACCAAGCCTGTGTACACGCCTCCGCCTACATCTGCGCCCA
CTGAGTCCCCGACAGCCTTCCCCACGGCCGCTCCCACTGAGGCCCCGACA
GCCTCCCCCACGGCCGCCCCGACCAAGCCCGTCTACACTCCTCCTCCGAC
GGCCGCACCCACGGAGGCCCCCACGGCCGTCCCGACTGAGGCTCCCACGG
CTGCACCCACTGAAGCTCCGACGGCTGCTCCCACGGCT
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Synonyms
Publications