jgi.p|Nanoce1779_2|601571, mRNA_8321 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601571
Unique Name	mRNA_8321
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2249
Alignment location	scaffold_23:359910..362158 +

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Properties


Property Name	Value
TranscriptId	601657
Track	FilteredModels2
ProteinId	601571

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:359910..362158 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601571	gene_8321	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601571	mRNA_8321-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8321	CDS_8321	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:359910..362158+
coding sequence from alignment at scaffold_23:359910..362158+

mRNA sequence

>mRNA_8321 ID=mRNA_8321|Name=jgi.p|Nanoce1779_2|601571|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp
AGGCAGCGCATCGTGGGGCCTGGTTTTGTTGACTTGTTTTGAGAACGTGG
CAGCGCAGGCAAGGTCATCATCTTTCCGGCATCGTCTCTCCGCCCGTACT
GCCTCCTGCCTCCCCACCCTCATTTCCCGTAGAACACTCGAATAGGCCCG
GTGTACACACCACTGTCCAACAGTGATATACTCTCGTAAATAGTGGGAAC
CAAAAACATGGCGAACGCCCTAATCTTTGCGGCTCGCGATGGGGACGTGA
CGGAGGTTCGCTGGCGCCTTGAGACCGACGCCACCCTTGCGACGTACGCA
GACAGCCACGGTCAGACAGCGCTCATGTGGGCGGCCGTTCAGGGCCACAC
AGAGGTGGCACGGTGCCTTCTGGACTTTGGGGCGGCTTTAGATGGGACAG
AGTGGGAAATGGGGCGCACGGCCTTGTATATGGCGGCTGGGCGGGGTCAT
GTATCGTTCGTGGAGCTTCTTTTGGGCCGCGGGGCGAACCCGTGCTTGCG
TCGGGCAGGCGGCCGCACGCCCTTGGGCATCGCGGCTTACAATGGGCACA
CAGAAGTGGTGAGGCTGCTGCTTAACGACGCAAGCTGTGATGTGGACAGC
CGGGACGACCAGGGCTGCACGCCTCTCTGGCAAGCCGCTCGGAACGGCCG
CATCCAATCCTTGCGCCTCCTCCTAGCCGCGGGGGCCGACCCGTCTATCC
AGGGAGAGCAGGGATGGCAAGCCATTGATGTAGCGCGTGAGAAGGACCGG
GGCGAGTGTATTGCCTTGCTGGAGGGGGAGGAGCGAGCCTACGTCCTGTC
TAAGGCCCGCCGCTTATGGCGTCAAGCGCACCTTCTCCATGCCGCTCTTG
AGCAAGGCTGCATCCTGGAGCCCAAGGAGGTGCCCACTCACCTGATAAGC
CGTCTACGTCCACGAGGGGGAGGCAAGTCGGGCAGCGAAGCGGTACGAGG
GAAGGGAGGTGGCTCTGCAGGGTTGGTGCTTGGACGAATGAGGAGCAACA
GCGGAGGCAGTGGTGGTCATGCTGCTGGTGGGAAGACTTCTTCCCCGGCG
TTCGTGGAGGCATGTCAGGGACTGCCCCGGGTGGCTACTGAGGAAGATGA
CGACTACGGGGCGAAGAACCGTAGCCGCGATGATGCCAGTGCTGCTGCAC
AATACGTGATCGAGCAAATGCGCTTCGACGTGTTTATCGTCATGCGCGAC
CTGCTCGCACTGTCCTCTTCGTCATCCTAAACCCTCTTCTGACTGATTTG
GTCATCGTCTATTGTGGTGAACGAAAGAGAAGAGAGAGGGGAAGAGTCTA
AACAAATATGAACAAGAATCCTGTAATCGAAGCGACAGTGATATGGCACA
TGACTGGTGACCCGCGTGAGGATCACGACGGGAAAGAGAGGCGCGGGTCC
TACGGTAGAGGAAATATGAAGGAGATGCATCAAACGCATTGGACTCCATT
ACATACTTATACCGGTAGTAGACGACGACTGACAGAGAGTAGATGACAAA
AGCGCGTAGAGGAGGAGAATAGAAGCGAGGAACAAAAAAGGATCGTGGTC
AATGAAAGTGAAATGGAATGGGACGTTTCACGAAAGATTTGCAAATGTAA
AGCGGAATTGAAAAATTCATGCCGTGGCGTTTATTGTTGAAAAAGGTCTG
GCTGAACGCCATGTTACTTTGTTACTGTCACTATTACTGAACTGCGAAAC
TTGTGTCTCGTTTCAATGGTAACATGCGGGAAAAGTCGAGCTAGGCCTTC
AAGTACAAGTGAGAGAAGAACGATACCTCTTTTACGAGGAAGAGATGTAA
CAATCATTGCGTATCTGGTATTATTATGATGTTTTTATTGAATGATATGT
AATAAGCCTTCAAGCCCCTTTCGTTCCCTTTTTACCATGAGTTTTAGTCA
CTTCCCTCTTTTGTTCTCGTTGTTTGCTTGTTTCTCCCCTTTCCGAAATT
GCGATTAAAATCTGTCCAGCGTCTTTCGAGAGGCTCACTCTTGCATGCCT
AGATATCTCCCTTCTCTTTTTCTGTCCTCTCTTCAAGACCAAACAGGTGC
TCAATTTTTTGCTGCTTAAGCTGCTGCTTCGAGATACTTATGCAACTACT
TCCTTCCCAACCATTTGGTATCTTAAAAATACTTTCAGCCCATGTGCCAG
AGAATGCCACCGTATGTCAGAAAAAAGGTTTGTAAGAGAGCATTGTGCTT
CTGTTCAACTAACTGCTACCGCTCTGCAGCAATGGGACTAATTAATACG

protein sequence of jgi.p|Nanoce1779_2|601571

>mRNA_8321-protein ID=mRNA_8321-protein|Name=jgi.p|Nanoce1779_2|601571|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MANALIFAARDGDVTEVRWRLETDATLATYADSHGQTALMWAAVQGHTEV
ARCLLDFGAALDGTEWEMGRTALYMAAGRGHVSFVELLLGRGANPCLRRA
GGRTPLGIAAYNGHTEVVRLLLNDASCDVDSRDDQGCTPLWQAARNGRIQ
SLRLLLAAGADPSIQGEQGWQAIDVAREKDRGECIALLEGEERAYVLSKA
RRLWRQAHLLHAALEQGCILEPKEVPTHLISRLRPRGGGKSGSEAVRGKG
GGSAGLVLGRMRSNSGGSGGHAAGGKTSSPAFVEACQGLPRVATEEDDDY
GAKNRSRDDASAAAQYVIEQMRFDVFIVMRDLLALSSSSS*

mRNA from alignment at scaffold_23:359910..362158+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8321 ID=mRNA_8321|Name=jgi.p|Nanoce1779_2|601571|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp|location=Sequence derived from alignment at scaffold_23:359910..362158+ (Nannochloropsis oceanica)
AGGCAGCGCATCGTGGGGCCTGGTTTTGTTGACTTGTTTTGAGAACGTGG
CAGCGCAGGCAAGGTCATCATCTTTCCGGCATCGTCTCTCCGCCCGTACT
GCCTCCTGCCTCCCCACCCTCATTTCCCGTAGAACACTCGAATAGGCCCG
GTGTACACACCACTGTCCAACAGTGATATACTCTCGTAAATAGTGGGAAC
CAAAAACATGGCGAACGCCCTAATCTTTGCGGCTCGCGATGGGGACGTGA
CGGAGGTTCGCTGGCGCCTTGAGACCGACGCCACCCTTGCGACGTACGCA
GACAGCCACGGTCAGACAGCGCTCATGTGGGCGGCCGTTCAGGGCCACAC
AGAGGTGGCACGGTGCCTTCTGGACTTTGGGGCGGCTTTAGATGGGACAG
AGTGGGAAATGGGGCGCACGGCCTTGTATATGGCGGCTGGGCGGGGTCAT
GTATCGTTCGTGGAGCTTCTTTTGGGCCGCGGGGCGAACCCGTGCTTGCG
TCGGGCAGGCGGCCGCACGCCCTTGGGCATCGCGGCTTACAATGGGCACA
CAGAAGTGGTGAGGCTGCTGCTTAACGACGCAAGCTGTGATGTGGACAGC
CGGGACGACCAGGGCTGCACGCCTCTCTGGCAAGCCGCTCGGAACGGCCG
CATCCAATCCTTGCGCCTCCTCCTAGCCGCGGGGGCCGACCCGTCTATCC
AGGGAGAGCAGGGATGGCAAGCCATTGATGTAGCGCGTGAGAAGGACCGG
GGCGAGTGTATTGCCTTGCTGGAGGGGGAGGAGCGAGCCTACGTCCTGTC
TAAGGCCCGCCGCTTATGGCGTCAAGCGCACCTTCTCCATGCCGCTCTTG
AGCAAGGCTGCATCCTGGAGCCCAAGGAGGTGCCCACTCACCTGATAAGC
CGTCTACGTCCACGAGGGGGAGGCAAGTCGGGCAGCGAAGCGGTACGAGG
GAAGGGAGGTGGCTCTGCAGGGTTGGTGCTTGGACGAATGAGGAGCAACA
GCGGAGGCAGTGGTGGTCATGCTGCTGGTGGGAAGACTTCTTCCCCGGCG
TTCGTGGAGGCATGTCAGGGACTGCCCCGGGTGGCTACTGAGGAAGATGA
CGACTACGGGGCGAAGAACCGTAGCCGCGATGATGCCAGTGCTGCTGCAC
AATACGTGATCGAGCAAATGCGCTTCGACGTGTTTATCGTCATGCGCGAC
CTGCTCGCACTGTCCTCTTCGTCATCCTAAACCCTCTTCTGACTGATTTG
GTCATCGTCTATTGTGGTGAACGAAAGAGAAGAGAGAGGGGAAGAGTCTA
AACAAATATGAACAAGAATCCTGTAATCGAAGCGACAGTGATATGGCACA
TGACTGGTGACCCGCGTGAGGATCACGACGGGAAAGAGAGGCGCGGGTCC
TACGGTAGAGGAAATATGAAGGAGATGCATCAAACGCATTGGACTCCATT
ACATACTTATACCGGTAGTAGACGACGACTGACAGAGAGTAGATGACAAA
AGCGCGTAGAGGAGGAGAATAGAAGCGAGGAACAAAAAAGGATCGTGGTC
AATGAAAGTGAAATGGAATGGGACGTTTCACGAAAGATTTGCAAATGTAA
AGCGGAATTGAAAAATTCATGCCGTGGCGTTTATTGTTGAAAAAGGTCTG
GCTGAACGCCATGTTACTTTGTTACTGTCACTATTACTGAACTGCGAAAC
TTGTGTCTCGTTTCAATGGTAACATGCGGGAAAAGTCGAGCTAGGCCTTC
AAGTACAAGTGAGAGAAGAACGATACCTCTTTTACGAGGAAGAGATGTAA
CAATCATTGCGTATCTGGTATTATTATGATGTTTTTATTGAATGATATGT
AATAAGCCTTCAAGCCCCTTTCGTTCCCTTTTTACCATGAGTTTTAGTCA
CTTCCCTCTTTTGTTCTCGTTGTTTGCTTGTTTCTCCCCTTTCCGAAATT
GCGATTAAAATCTGTCCAGCGTCTTTCGAGAGGCTCACTCTTGCATGCCT
AGATATCTCCCTTCTCTTTTTCTGTCCTCTCTTCAAGACCAAACAGGTGC
TCAATTTTTTGCTGCTTAAGCTGCTGCTTCGAGATACTTATGCAACTACT
TCCTTCCCAACCATTTGGTATCTTAAAAATACTTTCAGCCCATGTGCCAG
AGAATGCCACCGTATGTCAGAAAAAAGGTTTGTAAGAGAGCATTGTGCTT
CTGTTCAACTAACTGCTACCGCTCTGCAGCAATGGGACTAATTAATACG

Coding sequence (CDS) from alignment at scaffold_23:359910..362158+

>mRNA_8321 ID=mRNA_8321|Name=jgi.p|Nanoce1779_2|601571|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_23:359910..362158+ (Nannochloropsis oceanica)
ATGGCGAACGCCCTAATCTTTGCGGCTCGCGATGGGGACGTGACGGAGGT
TCGCTGGCGCCTTGAGACCGACGCCACCCTTGCGACGTACGCAGACAGCC
ACGGTCAGACAGCGCTCATGTGGGCGGCCGTTCAGGGCCACACAGAGGTG
GCACGGTGCCTTCTGGACTTTGGGGCGGCTTTAGATGGGACAGAGTGGGA
AATGGGGCGCACGGCCTTGTATATGGCGGCTGGGCGGGGTCATGTATCGT
TCGTGGAGCTTCTTTTGGGCCGCGGGGCGAACCCGTGCTTGCGTCGGGCA
GGCGGCCGCACGCCCTTGGGCATCGCGGCTTACAATGGGCACACAGAAGT
GGTGAGGCTGCTGCTTAACGACGCAAGCTGTGATGTGGACAGCCGGGACG
ACCAGGGCTGCACGCCTCTCTGGCAAGCCGCTCGGAACGGCCGCATCCAA
TCCTTGCGCCTCCTCCTAGCCGCGGGGGCCGACCCGTCTATCCAGGGAGA
GCAGGGATGGCAAGCCATTGATGTAGCGCGTGAGAAGGACCGGGGCGAGT
GTATTGCCTTGCTGGAGGGGGAGGAGCGAGCCTACGTCCTGTCTAAGGCC
CGCCGCTTATGGCGTCAAGCGCACCTTCTCCATGCCGCTCTTGAGCAAGG
CTGCATCCTGGAGCCCAAGGAGGTGCCCACTCACCTGATAAGCCGTCTAC
GTCCACGAGGGGGAGGCAAGTCGGGCAGCGAAGCGGTACGAGGGAAGGGA
GGTGGCTCTGCAGGGTTGGTGCTTGGACGAATGAGGAGCAACAGCGGAGG
CAGTGGTGGTCATGCTGCTGGTGGGAAGACTTCTTCCCCGGCGTTCGTGG
AGGCATGTCAGGGACTGCCCCGGGTGGCTACTGAGGAAGATGACGACTAC
GGGGCGAAGAACCGTAGCCGCGATGATGCCAGTGCTGCTGCACAATACGT
GATCGAGCAAATGCGCTTCGACGTGTTTATCGTCATGCGCGACCTGCTCG
CACTGTCCTCTTCGTCATCCTAA

Synonyms

Publications