jgi.p|Nanoce1779_2|655429, mRNA_8320 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|655429
Unique NamemRNA_8320
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length526
Alignment locationscaffold_23:358486..359280 -

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Properties
Property NameValue
TranscriptId655515
TrackFilteredModels2
ProteinId655429
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:358486..359280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|655429gene_8320Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|655429mRNA_8320-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8320CDS_8320Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8320 ID=mRNA_8320|Name=jgi.p|Nanoce1779_2|655429|organism=Nannochloropsis oceanica|type=mRNA|length=526bp
TCCCTTGTGGAAAGCCCTGGTCTTGACGGACATGGCAGATGTCAAGTTCT
ACTGCCAGAAGCTCACTACAGGCGAGATGTACTCTCTGCTGGCCGCCATC
CTTACCTCCCGTTCCTGGGACGACATCACCAGCCCTGATCTAGGTTCCCT
CCGAGCCCCAAGTTCCCAGGAAGACAAGACATTGACAAGGAGCTACGCCC
AGCGGTACTATTTCGAGATCGTCGAGATTTTGAACTCGGTTCCATGGGAG
ATGCTGCTCTTGTTGAAGATGAACGACTGTTTAAGACATGTAGATAGAGA
GCTAGGCGCCCCTGTGAACAGCTCGCTAGTCACCGCAGAAGAAGCCGTCA
AGGCGTTGTTGCGAGAAGAGCTGAAGGCAGGAGCGAGGGAGGGAGGGCGG
GCGGGGTGGGGGAAAAAAGGTATGGGCTTGGTGCGAGTATGGAGTAGGGT
GAAGCGTCTGCCGCTTTTGAAAGGAGGAGGGCATGGGAAGGAAGAGGAGA
CGGACAAGGAAGGGGCAGTTGCGTGA
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protein sequence of jgi.p|Nanoce1779_2|655429

>mRNA_8320-protein ID=mRNA_8320-protein|Name=jgi.p|Nanoce1779_2|655429|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MADVKFYCQKLTTGEMYSLLAAILTSRSWDDITSPDLGSLRAPSSQEDKT
LTRSYAQRYYFEIVEILNSVPWEMLLLLKMNDCLRHVDRELGAPVNSSLV
TAEEAVKALLREELKAGAREGGRAGWGKKGMGLVRVWSRVKRLPLLKGGG
HGKEEETDKEGAVA*
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mRNA from alignment at scaffold_23:358486..359280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8320 ID=mRNA_8320|Name=jgi.p|Nanoce1779_2|655429|organism=Nannochloropsis oceanica|type=mRNA|length=795bp|location=Sequence derived from alignment at scaffold_23:358486..359280- (Nannochloropsis oceanica)
TCCCTTGTGGAAAGCCCTGGTCTTGACGGACATGGCAGATGTCAAGTTCT
ACTGCCAGAAGCTCAATGCAGATGAGGGAGGGAGGGAGGGAGGGCGGGAG
GAATTGGGGGGAAGGAGGGGAGAGTGTTGATCGGTTGGGGAGAGTGTTGA
TCGGTTGGTTGATTGCCCCCTCAACTGTTGATCAGATGGATACAAGTGTA
ATTTTGCTGGGCTATTTTACCACCAATGAATCAATAAATGTACATACATG
TTCCGGTTTTTCATGTATCCTTTTTCCCCCTTCACCTACAGGCGAGATGT
ACTCTCTGCTGGCCGCCATCCTTACCTCCCGTTCCTGGGACGACATCACC
AGCCCTGATCTAGGTTCCCTCCGAGCCCCAAGTTCCCAGGAAGACAAGAC
ATTGACAAGGAGCTACGCCCAGCGGTACTATTTCGAGATCGTCGAGATTT
TGAACTCGGTTCCATGGGAGATGCTGCTCTTGTTGAAGATGAACGACTGT
TTAAGACATGTAGATAGAGAGCTAGGCGCCCCTGTGAACAGCTCGCTAGT
CACCGCAGAAGAAGCCGTCAAGGCGTTGTTGCGAGAAGAGCTGAAGGCAG
GAGCGAGGGAGGGAGGGCGGGCGGGGTGGGGGAAAAAAGGTATGGGCTTG
GTGCGAGTATGTGAGTTGCGAGGCAAGGATTAAGACGTATCTGGCTTGGT
TGTTTACAGGGAGTAGGGTGAAGCGTCTGCCGCTTTTGAAAGGAGGAGGG
CATGGGAAGGAAGAGGAGACGGACAAGGAAGGGGCAGTTGCGTGA
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Coding sequence (CDS) from alignment at scaffold_23:358486..359280-

>mRNA_8320 ID=mRNA_8320|Name=jgi.p|Nanoce1779_2|655429|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at scaffold_23:358486..359280- (Nannochloropsis oceanica)
GGAGTAGGGTGAAGCGTCTGCCGCTTTTGAAAGGAGGAGGGCATGGGAAG
GAAGAGGAGACGGACAAGGAAGGGGCAGTTGCGTGACTACAGGCGAGATG
TACTCTCTGCTGGCCGCCATCCTTACCTCCCGTTCCTGGGACGACATCAC
CAGCCCTGATCTAGGTTCCCTCCGAGCCCCAAGTTCCCAGGAAGACAAGA
CATTGACAAGGAGCTACGCCCAGCGGTACTATTTCGAGATCGTCGAGATT
TTGAACTCGGTTCCATGGGAGATGCTGCTCTTGTTGAAGATGAACGACTG
TTTAAGACATGTAGATAGAGAGCTAGGCGCCCCTGTGAACAGCTCGCTAG
TCACCGCAGAAGAAGCCGTCAAGGCGTTGTTGCGAGAAGAGCTGAAGGCA
GGAGCGAGGGAGGGAGGGCGGGCGGGGTGGGGGAAAAAAGGTATGGGCTT
GGTGCGAGTATATGGCAGATGTCAAGTTCTACTGCCAGAAGCTCAGGAGT
AGGGTGAAGCGTCTGCCGCTTTTGAAAGGAGGAGGGCATGGGAAGGAAGA
GGAGACGGACAAGGAAGGGGCAGTTGCGTGACTACAGGCGAGATGTACTC
TCTGCTGGCCGCCATCCTTACCTCCCGTTCCTGGGACGACATCACCAGCC
CTGATCTAGGTTCCCTCCGAGCCCCAAGTTCCCAGGAAGACAAGACATTG
ACAAGGAGCTACGCCCAGCGGTACTATTTCGAGATCGTCGAGATTTTGAA
CTCGGTTCCATGGGAGATGCTGCTCTTGTTGAAGATGAACGACTGTTTAA
GACATGTAGATAGAGAGCTAGGCGCCCCTGTGAACAGCTCGCTAGTCACC
GCAGAAGAAGCCGTCAAGGCGTTGTTGCGAGAAGAGCTGAAGGCAGGAGC
GAGGGAGGGAGGGCGGGCGGGGTGGGGGAAAAAAGGTATGGGCTTGGTGC
GAGTATATGGCAGATGTCAAGTTCTACTGCCAGAAGCTCAGGAGTAGGGT
GAAGCGTCTGCCGCTTTTGAAAGGAGGAGGGCATGGGAAGGAAGAGGAGA
CGGACAAGGAAGGGGCAGTTGCGTGACTACAGGCGAGATGTACTCTCTGC
TGGCCGCCATCCTTACCTCCCGTTCCTGGGACGACATCACCAGCCCTGAT
CTAGGTTCCCTCCGAGCCCCAAGTTCCCAGGAAGACAAGACATTGACAAG
GAGCTACGCCCAGCGGTACTATTTCGAGATCGTCGAGATTTTGAACTCGG
TTCCATGGGAGATGCTGCTCTTGTTGAAGATGAACGACTGTTTAAGACAT
GTAGATAGAGAGCTAGGCGCCCCTGTGAACAGCTCGCTAGTCACCGCAGA
AGAAGCCGTCAAGGCGTTGTTGCGAGAAGAGCTGAAGGCAGGAGCGAGGG
AGGGAGGGCGGGCGGGGTGGGGGAAAAAAGGTATGGGCTTGGTGCGAGTA
TATGGCAGATGTCAAGTTCTACTGCCAGAAGCTCA
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Synonyms
Publications