jgi.p|Nanoce1779_2|601550, mRNA_8315 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601550
Unique Name	mRNA_8315
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2499
Alignment location	scaffold_23:343196..345694 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601636
Track	FilteredModels2
ProteinId	601550

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:343196..345694 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601550	gene_8315	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601550	mRNA_8315-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8315	CDS_8315	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:343196..345694+
coding sequence from alignment at scaffold_23:343196..345694+

mRNA sequence

>mRNA_8315 ID=mRNA_8315|Name=jgi.p|Nanoce1779_2|601550|organism=Nannochloropsis oceanica|type=mRNA|length=2499bp
GGAGGGAGGGCATGGGGCGGAAGGAGCTGGTCTACGTGTCGGTAGAGGAC
CATATGCGCCGCAAGGCCCAGGAAGGGGAAGATCCTCGGGAGCGACGGAT
AAGGGAAGAGCACGACACAGCCGCTGCCTTCGTTGAGCTAGAGCGTGTCC
CTTCCTCCCTCTCTCATTCCGCCTCAGGGCAGGGTGGTGGCCATGGGGTT
GGCGGTAACGAGGGAAGCAGTAGTCGCAGCAGCAACATCAACAGCAGCAG
CAGGGAGGGAAGGGCGGTGGTTAGCCCGCGGACCTTCTTGGCGCAGTATC
ACAAACGAACGTACCGCCTCTGTCACGAGAATCCCTCTCTCACTCCCTCC
ATTCCTCCGTCCTCCATCCTCTCGGTCTCCTCCCTCCTCTTCCGCCTGGC
TCTCCAGGTATTGCAAGACACCCACCTCGTCCACCACCACCTCACCAGTA
GCAACCCCAGCGGCGGTGATTCTAAGGGTGCGGAGTGGCCCTGCTTCACT
TACCTTAGAGTGGAACGCGGGGTCAACAGCGAGGGAGAGAAAAACAGTCA
CGGCGGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCCGTAATAGTG
AACGTTTTGCTCCCGGTCAGGCGCTGGACGTGCGGGGGATGGAGCCCGGG
AAGGCTATCCGCCTGCACTTGGGTGTGGACCCCTCTCGCTGCGTCAATCC
CGTACCAACCGTTCTCCTCCGGTTCCTCGACGAAAGCCAGGCACGGGCCC
TTCCTCCGAATCCCGCAATGGTGGCGTCCCTGCTGATGCTGCCGCAAGTA
AAGGAAGGAGATGAGGAAGTGGAGGAGAGGCGGGTGTATGAGGCACCTGT
ACTGGCGGCACGCAAAGACCTGGAAGTGCTGTGTGCGGTGTTGGAGGGCA
CGGTGACAGCCGACGCAGTGGAAATTCAAGACGAGGAAGACCGAGGGAAA
GGAGGAGGGAGAGGAGGAGGGAGAGCAGGAGGTCGGATAGTGATTGATGT
CGACGACGAGGACGAGGACGGGCTTGCAGAACCAGGCGGTCTATCGCTGC
AATCAGCGCCTGCAGCCACGTCCATGCCCTCTACCCTGGACCTCAGCTTT
CACCCCCTAACCCCGAAAGCCTTGGCCTCGCTTAGCGCCGCTCTTCCGGC
CTTCATTTGCCTCCGTCTCCGAGCCTGCTCTCTCACCTCTCTCCCAAAAG
CAACCGTCACATCGACAGCAGTGCACCTCTGTGAGCTCGACCTTAGTTAT
AACCCTTTCGTCCCCTCTCCAACCTTCCCTTCCTTGATGGCTGATCTTCT
GGCCATCCCCTCCCTCACGCGCTTCTCTATGGACGGCGTGCCTTCCCATG
TCGCGGAGCCCCTTGCATGCGCGTTCGAGAATCGACGACGTACGGTTGCA
GTGCCCGGACTGGCCTGTGTAAGTCTGTGTGACAATGTCTGGTCGCCCGC
GGCATGGATGCAGGTGCTCGGGAGTGTACTCTGTCGGGCGCTCTATGTGC
ATGGCATCAAGCTGTCGAGGGAAGGTTTGGGAGAGAGGGTGGAGGTGAGG
GAGGAAGGAGGAAATGTCGAGGGGGTATGTGCACAATCACAGCAGGCCTT
GAGAGAAAAAGGCAGCGCCCTCGAAGTGTTGGCGACCCGCCTTGAGGCAA
AGGATTGGATGCTGAATCATTTGGCAGTGTCCTTCCCATCCCCAGGAGAT
CCTGTGTCGCTGGAGCCCTCCTGTGTCTTTCGGGCCTTGGTCCGACCCTC
ATGTTCGTTGACCCGCCTAGACCTCGTCAGCAGCAGCGGTCCCTTCCTTT
CTCTCAGCGCCATCACCGATCTCTTCGCCGCTCTTTGCCACAACACCAGC
CTCGAGTCCCTGGACCTCTCCCATGCGACCAGCTTTGCATCCTTTCCGTG
CGCCGAACCTTGTTTGCGCCTCTTGGCGCGGGCTCTACAAACCAACCCCG
AAAGGCGCCTGCGCGCCCTTAGCCTGCGGGGCTGCGGCCTCGGTCTCAAG
GGACTGGCGACATTATTGGCGGCGCTGCTTCCGTCTTCATCCTCAGACGG
CGGGATGCTCTCCTGTGCCCCTTTTGACTCCATAGACCTGGCAGAAAACC
ACGACACGGATCACGGTATCGTTCCATCAATGAACCACCTGCACGATGAG
GCGGACGTCTTCATGCTAAGTCGCATCTTGCCGCAGCTGCTCCTTCCGAC
GGGCCCGCAGCTGCTGGCGACAACGGGCGGGAAGCTCGAGCTGTCGGGTA
ACGGCCTGGTTGGATTGATGAACGAGCTGGGTTGGCATACCAACAAGGAC
TTGAACGGGTGGCTGCAGACCTCCGAGGAGGACGGCGATGACTCCTTGTT
CTTTGTGAGCCCACCGGGTAGGAAGATGAATATGCCTGAAGAGGAGTGAA
GACTTGGCAGCGCATGGTTGTATTCAGAAACTTCACAAACTAAATTCCCT
TGAGGAGGAGGAGGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG

protein sequence of jgi.p|Nanoce1779_2|601550

>mRNA_8315-protein ID=mRNA_8315-protein|Name=jgi.p|Nanoce1779_2|601550|organism=Nannochloropsis oceanica|type=polypeptide|length=796bp
MGRKELVYVSVEDHMRRKAQEGEDPRERRIREEHDTAAAFVELERVPSSL
SHSASGQGGGHGVGGNEGSSSRSSNINSSSREGRAVVSPRTFLAQYHKRT
YRLCHENPSLTPSIPPSSILSVSSLLFRLALQVLQDTHLVHHHLTSSNPS
GGDSKGAEWPCFTYLRVERGVNSEGEKNSHGGSSSSSSSNSSSRNSERFA
PGQALDVRGMEPGKAIRLHLGVDPSRCVNPVPTVLLRFLDESQARALPPN
PAMVASLLMLPQVKEGDEEVEERRVYEAPVLAARKDLEVLCAVLEGTVTA
DAVEIQDEEDRGKGGGRGGGRAGGRIVIDVDDEDEDGLAEPGGLSLQSAP
AATSMPSTLDLSFHPLTPKALASLSAALPAFICLRLRACSLTSLPKATVT
STAVHLCELDLSYNPFVPSPTFPSLMADLLAIPSLTRFSMDGVPSHVAEP
LACAFENRRRTVAVPGLACVSLCDNVWSPAAWMQVLGSVLCRALYVHGIK
LSREGLGERVEVREEGGNVEGVCAQSQQALREKGSALEVLATRLEAKDWM
LNHLAVSFPSPGDPVSLEPSCVFRALVRPSCSLTRLDLVSSSGPFLSLSA
ITDLFAALCHNTSLESLDLSHATSFASFPCAEPCLRLLARALQTNPERRL
RALSLRGCGLGLKGLATLLAALLPSSSSDGGMLSCAPFDSIDLAENHDTD
HGIVPSMNHLHDEADVFMLSRILPQLLLPTGPQLLATTGGKLELSGNGLV
GLMNELGWHTNKDLNGWLQTSEEDGDDSLFFVSPPGRKMNMPEEE*

mRNA from alignment at scaffold_23:343196..345694+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8315 ID=mRNA_8315|Name=jgi.p|Nanoce1779_2|601550|organism=Nannochloropsis oceanica|type=mRNA|length=2499bp|location=Sequence derived from alignment at scaffold_23:343196..345694+ (Nannochloropsis oceanica)
GGAGGGAGGGCATGGGGCGGAAGGAGCTGGTCTACGTGTCGGTAGAGGAC
CATATGCGCCGCAAGGCCCAGGAAGGGGAAGATCCTCGGGAGCGACGGAT
AAGGGAAGAGCACGACACAGCCGCTGCCTTCGTTGAGCTAGAGCGTGTCC
CTTCCTCCCTCTCTCATTCCGCCTCAGGGCAGGGTGGTGGCCATGGGGTT
GGCGGTAACGAGGGAAGCAGTAGTCGCAGCAGCAACATCAACAGCAGCAG
CAGGGAGGGAAGGGCGGTGGTTAGCCCGCGGACCTTCTTGGCGCAGTATC
ACAAACGAACGTACCGCCTCTGTCACGAGAATCCCTCTCTCACTCCCTCC
ATTCCTCCGTCCTCCATCCTCTCGGTCTCCTCCCTCCTCTTCCGCCTGGC
TCTCCAGGTATTGCAAGACACCCACCTCGTCCACCACCACCTCACCAGTA
GCAACCCCAGCGGCGGTGATTCTAAGGGTGCGGAGTGGCCCTGCTTCACT
TACCTTAGAGTGGAACGCGGGGTCAACAGCGAGGGAGAGAAAAACAGTCA
CGGCGGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCCGTAATAGTG
AACGTTTTGCTCCCGGTCAGGCGCTGGACGTGCGGGGGATGGAGCCCGGG
AAGGCTATCCGCCTGCACTTGGGTGTGGACCCCTCTCGCTGCGTCAATCC
CGTACCAACCGTTCTCCTCCGGTTCCTCGACGAAAGCCAGGCACGGGCCC
TTCCTCCGAATCCCGCAATGGTGGCGTCCCTGCTGATGCTGCCGCAAGTA
AAGGAAGGAGATGAGGAAGTGGAGGAGAGGCGGGTGTATGAGGCACCTGT
ACTGGCGGCACGCAAAGACCTGGAAGTGCTGTGTGCGGTGTTGGAGGGCA
CGGTGACAGCCGACGCAGTGGAAATTCAAGACGAGGAAGACCGAGGGAAA
GGAGGAGGGAGAGGAGGAGGGAGAGCAGGAGGTCGGATAGTGATTGATGT
CGACGACGAGGACGAGGACGGGCTTGCAGAACCAGGCGGTCTATCGCTGC
AATCAGCGCCTGCAGCCACGTCCATGCCCTCTACCCTGGACCTCAGCTTT
CACCCCCTAACCCCGAAAGCCTTGGCCTCGCTTAGCGCCGCTCTTCCGGC
CTTCATTTGCCTCCGTCTCCGAGCCTGCTCTCTCACCTCTCTCCCAAAAG
CAACCGTCACATCGACAGCAGTGCACCTCTGTGAGCTCGACCTTAGTTAT
AACCCTTTCGTCCCCTCTCCAACCTTCCCTTCCTTGATGGCTGATCTTCT
GGCCATCCCCTCCCTCACGCGCTTCTCTATGGACGGCGTGCCTTCCCATG
TCGCGGAGCCCCTTGCATGCGCGTTCGAGAATCGACGACGTACGGTTGCA
GTGCCCGGACTGGCCTGTGTAAGTCTGTGTGACAATGTCTGGTCGCCCGC
GGCATGGATGCAGGTGCTCGGGAGTGTACTCTGTCGGGCGCTCTATGTGC
ATGGCATCAAGCTGTCGAGGGAAGGTTTGGGAGAGAGGGTGGAGGTGAGG
GAGGAAGGAGGAAATGTCGAGGGGGTATGTGCACAATCACAGCAGGCCTT
GAGAGAAAAAGGCAGCGCCCTCGAAGTGTTGGCGACCCGCCTTGAGGCAA
AGGATTGGATGCTGAATCATTTGGCAGTGTCCTTCCCATCCCCAGGAGAT
CCTGTGTCGCTGGAGCCCTCCTGTGTCTTTCGGGCCTTGGTCCGACCCTC
ATGTTCGTTGACCCGCCTAGACCTCGTCAGCAGCAGCGGTCCCTTCCTTT
CTCTCAGCGCCATCACCGATCTCTTCGCCGCTCTTTGCCACAACACCAGC
CTCGAGTCCCTGGACCTCTCCCATGCGACCAGCTTTGCATCCTTTCCGTG
CGCCGAACCTTGTTTGCGCCTCTTGGCGCGGGCTCTACAAACCAACCCCG
AAAGGCGCCTGCGCGCCCTTAGCCTGCGGGGCTGCGGCCTCGGTCTCAAG
GGACTGGCGACATTATTGGCGGCGCTGCTTCCGTCTTCATCCTCAGACGG
CGGGATGCTCTCCTGTGCCCCTTTTGACTCCATAGACCTGGCAGAAAACC
ACGACACGGATCACGGTATCGTTCCATCAATGAACCACCTGCACGATGAG
GCGGACGTCTTCATGCTAAGTCGCATCTTGCCGCAGCTGCTCCTTCCGAC
GGGCCCGCAGCTGCTGGCGACAACGGGCGGGAAGCTCGAGCTGTCGGGTA
ACGGCCTGGTTGGATTGATGAACGAGCTGGGTTGGCATACCAACAAGGAC
TTGAACGGGTGGCTGCAGACCTCCGAGGAGGACGGCGATGACTCCTTGTT
CTTTGTGAGCCCACCGGGTAGGAAGATGAATATGCCTGAAGAGGAGTGAA
GACTTGGCAGCGCATGGTTGTATTCAGAAACTTCACAAACTAAATTCCCT
TGAGGAGGAGGAGGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG

Coding sequence (CDS) from alignment at scaffold_23:343196..345694+

>mRNA_8315 ID=mRNA_8315|Name=jgi.p|Nanoce1779_2|601550|organism=Nannochloropsis oceanica|type=CDS|length=2388bp|location=Sequence derived from alignment at scaffold_23:343196..345694+ (Nannochloropsis oceanica)
ATGGGGCGGAAGGAGCTGGTCTACGTGTCGGTAGAGGACCATATGCGCCG
CAAGGCCCAGGAAGGGGAAGATCCTCGGGAGCGACGGATAAGGGAAGAGC
ACGACACAGCCGCTGCCTTCGTTGAGCTAGAGCGTGTCCCTTCCTCCCTC
TCTCATTCCGCCTCAGGGCAGGGTGGTGGCCATGGGGTTGGCGGTAACGA
GGGAAGCAGTAGTCGCAGCAGCAACATCAACAGCAGCAGCAGGGAGGGAA
GGGCGGTGGTTAGCCCGCGGACCTTCTTGGCGCAGTATCACAAACGAACG
TACCGCCTCTGTCACGAGAATCCCTCTCTCACTCCCTCCATTCCTCCGTC
CTCCATCCTCTCGGTCTCCTCCCTCCTCTTCCGCCTGGCTCTCCAGGTAT
TGCAAGACACCCACCTCGTCCACCACCACCTCACCAGTAGCAACCCCAGC
GGCGGTGATTCTAAGGGTGCGGAGTGGCCCTGCTTCACTTACCTTAGAGT
GGAACGCGGGGTCAACAGCGAGGGAGAGAAAAACAGTCACGGCGGCAGCA
GCAGCAGCAGCAGCAGCAACAGCAGCAGCCGTAATAGTGAACGTTTTGCT
CCCGGTCAGGCGCTGGACGTGCGGGGGATGGAGCCCGGGAAGGCTATCCG
CCTGCACTTGGGTGTGGACCCCTCTCGCTGCGTCAATCCCGTACCAACCG
TTCTCCTCCGGTTCCTCGACGAAAGCCAGGCACGGGCCCTTCCTCCGAAT
CCCGCAATGGTGGCGTCCCTGCTGATGCTGCCGCAAGTAAAGGAAGGAGA
TGAGGAAGTGGAGGAGAGGCGGGTGTATGAGGCACCTGTACTGGCGGCAC
GCAAAGACCTGGAAGTGCTGTGTGCGGTGTTGGAGGGCACGGTGACAGCC
GACGCAGTGGAAATTCAAGACGAGGAAGACCGAGGGAAAGGAGGAGGGAG
AGGAGGAGGGAGAGCAGGAGGTCGGATAGTGATTGATGTCGACGACGAGG
ACGAGGACGGGCTTGCAGAACCAGGCGGTCTATCGCTGCAATCAGCGCCT
GCAGCCACGTCCATGCCCTCTACCCTGGACCTCAGCTTTCACCCCCTAAC
CCCGAAAGCCTTGGCCTCGCTTAGCGCCGCTCTTCCGGCCTTCATTTGCC
TCCGTCTCCGAGCCTGCTCTCTCACCTCTCTCCCAAAAGCAACCGTCACA
TCGACAGCAGTGCACCTCTGTGAGCTCGACCTTAGTTATAACCCTTTCGT
CCCCTCTCCAACCTTCCCTTCCTTGATGGCTGATCTTCTGGCCATCCCCT
CCCTCACGCGCTTCTCTATGGACGGCGTGCCTTCCCATGTCGCGGAGCCC
CTTGCATGCGCGTTCGAGAATCGACGACGTACGGTTGCAGTGCCCGGACT
GGCCTGTGTAAGTCTGTGTGACAATGTCTGGTCGCCCGCGGCATGGATGC
AGGTGCTCGGGAGTGTACTCTGTCGGGCGCTCTATGTGCATGGCATCAAG
CTGTCGAGGGAAGGTTTGGGAGAGAGGGTGGAGGTGAGGGAGGAAGGAGG
AAATGTCGAGGGGGTATGTGCACAATCACAGCAGGCCTTGAGAGAAAAAG
GCAGCGCCCTCGAAGTGTTGGCGACCCGCCTTGAGGCAAAGGATTGGATG
CTGAATCATTTGGCAGTGTCCTTCCCATCCCCAGGAGATCCTGTGTCGCT
GGAGCCCTCCTGTGTCTTTCGGGCCTTGGTCCGACCCTCATGTTCGTTGA
CCCGCCTAGACCTCGTCAGCAGCAGCGGTCCCTTCCTTTCTCTCAGCGCC
ATCACCGATCTCTTCGCCGCTCTTTGCCACAACACCAGCCTCGAGTCCCT
GGACCTCTCCCATGCGACCAGCTTTGCATCCTTTCCGTGCGCCGAACCTT
GTTTGCGCCTCTTGGCGCGGGCTCTACAAACCAACCCCGAAAGGCGCCTG
CGCGCCCTTAGCCTGCGGGGCTGCGGCCTCGGTCTCAAGGGACTGGCGAC
ATTATTGGCGGCGCTGCTTCCGTCTTCATCCTCAGACGGCGGGATGCTCT
CCTGTGCCCCTTTTGACTCCATAGACCTGGCAGAAAACCACGACACGGAT
CACGGTATCGTTCCATCAATGAACCACCTGCACGATGAGGCGGACGTCTT
CATGCTAAGTCGCATCTTGCCGCAGCTGCTCCTTCCGACGGGCCCGCAGC
TGCTGGCGACAACGGGCGGGAAGCTCGAGCTGTCGGGTAACGGCCTGGTT
GGATTGATGAACGAGCTGGGTTGGCATACCAACAAGGACTTGAACGGGTG
GCTGCAGACCTCCGAGGAGGACGGCGATGACTCCTTGTTCTTTGTGAGCC
CACCGGGTAGGAAGATGAATATGCCTGAAGAGGAGTGA

Synonyms

Publications