jgi.p|Nanoce1779_2|601545, mRNA_8313 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601545
Unique NamemRNA_8313
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1635
Alignment locationscaffold_23:338111..339849 -

Link to JBrowse

Properties
Property NameValue
TranscriptId601631
TrackFilteredModels2
ProteinId601545
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:338111..339849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601545gene_8313Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601545mRNA_8313-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8313CDS_8313Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8313 ID=mRNA_8313|Name=jgi.p|Nanoce1779_2|601545|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp
CACCATGCTTTCAACTACCGACCCTTCTCCTCCTCCTCTCCGAGTTGTTG
TGTTGCTGCTGGTGGTGGTGGTGGTGGTGGTAAGGGTGGTATTTTAGTGC
TTTCTTGTGCTCATCATAGTTCTTGCTCTTTCTTGCCATATACATTGCCC
CAGCATATTTCTATTCGTCTTCGCTGACCTGAGTCTCCTCGTCTCCTCCT
TCCAAGGCTAGAGCGGGGAAGCGATCGATCTCTCTCCACCACAATCCACA
AGGTGGAGGGAGGTATGATGCTACGAATGATAAAAGGTCTGGAACCTATA
CCAAACGTGCATGCCTGTGCCATAGAGTGCTCCCGTCACTCGTCACTACA
TGCTGTGTCACCAGTGGGAACGGTGCCTTGGATGTTGAACAAGCGAACAG
CAGTGGCCCATCTGTGGTACGCGGCCAGAGGAGAACACGCGTCGAGCGTC
ACCTGCTGCGCCTCCCTTCTTCAAGCCACCACATACCGCGAGACGCACGC
AACTTGTGCGCTCACACCGAATAGTAATCAAAGAACATTTGAACCCGCGA
TTTTCTGTGGTCAACGCGCACGCATTAATCAGACTGACGCCCTGCTGGTT
TTCCCATTTCAACTGGAATCCCATTTCGACAGGGTCATCGCCCACCCATG
TCACGCCTATTTCTTGCCATCCTCATCCTGGGCATGCTTGCCACCCCTGC
GCTGGCCTTCCTCGCCCCGCTTCCTGTCTCTTATAGCCGCTCGGTGCTTA
CTGCTAACCCGGGATCTCGGGTTTCGCGGGCCCCCCCTCTCCAAGCTGGC
TCCCTCACGGACTTGTCCCTCCTTATTGCCGCTGCCGCGGATGAGTACGA
GTACGGTGCGGTAGCTGCTCCGGGTAGGTGTGTTCGATTTCTTACTTGCT
CCTCCCTTGCCTCCTCGATTCCGCCCTAACATCCCCGTTTTTGGCTGACA
GGATGGGTACTGCCTTTAGGAGCCTTTTTGACACTGGGATTAGCGGTTAG
TTATTTAAAGGATGTCTAATCTCTTGTCCTCTCCTGCCATTTTCGGGTAC
CTGTTCCCCCACCCTCTGTGACTTTTTTCTCTTCCTTGACTTTGATTGAT
TACATGCTCATTGCACAAGAGGTGCTCATCTTCCTCCTTCTCCTCTCCCT
CGCTCATTCCCCATACTGGATACAGGTGGCCATCCCTCTGGCTCTGCGAC
CGGGTACGGAGGCGTTCGAGGAGGAGAAAGGCCGACTGGAGGAGATGCGG
AGAAACCGAGGGGAGGAGGAGGAGTAAACGGTGAATAGACAGACGAGGCG
ATTGAAGAGAGAACAGGAGAGCGAGAGAGGAAGGGGAGTTGCTTTAATGG
TGACTCTTGTGTGCGGGGAGGGAGAAAGGGAGGAAGAGAGGAAGAGGGAG
TCGATGAGAAAGAGTATATGCATCAATTGATCAAGAGTCATGAACACGAA
AACGGAAAAAGAGCAAAAAGGTGAGAAGAAGGATTGAATTAAGAGAGCAG
TCAGATAACCAACCCAGAGAACGCCAAGGAAACAACAAACAACCTAACGC
ATCAGGCATCTAAGCCCAGGATCACCTCTCTCCGCCTCATATGTCGTCGA
CTTTGTGTCAAAAGAAAGCCTTTCCCTGGGCGAAT
back to top

protein sequence of jgi.p|Nanoce1779_2|601545

>mRNA_8313-protein ID=mRNA_8313-protein|Name=jgi.p|Nanoce1779_2|601545|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MMLRMIKGLEPIPNVHACAIECSRHSSLHAVSPVGTVPWMLNKRTAVAHL
WYAARGEHASSVTCCASLLQATTYRETHATCALTPNSNQRTFEPAIFCGQ
RARINQTDALLVFPFQLESHFDRVIAHPCHAYFLPSSSWACLPPLRWPSS
PRFLSLIAARCLLLTRDLGFRGPPLSKLAPSRTCPSLLPLPRMSTSTVR*
back to top

mRNA from alignment at scaffold_23:338111..339849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8313 ID=mRNA_8313|Name=jgi.p|Nanoce1779_2|601545|organism=Nannochloropsis oceanica|type=mRNA|length=1739bp|location=Sequence derived from alignment at scaffold_23:338111..339849- (Nannochloropsis oceanica)
CACCATGCTTTCAACTACCGACCCTTCTCCTCCTCCTCTCCGAGTTGTTG
TGTTGCTGCTGGTGGTGGTGGTGGTGGTGGTAAGGGTGGTATTTTAGTGC
TTTCTTGTGCTCATCATAGTTCTTGCTCTTTCTTGCCATATACATTGCCC
CAGCATATTTCTATTCGTCTTCGCTGACCTGAGTCTCCTCGTCTCCTCCT
TCCAAGGCTAGAGCGGGGAAGCGATCGATCTCTCTCCACCACAATCCACA
AGGTGGAGGGAGGTATGATGCTACGAATGATAAAAGGTCTGGAACCTATA
CCAAACGTGCATGCCTGTGCCATAGAGTGCTCCCGTCACTCGTCACTACA
TGCTGTGTCACCAGTGGGAACGGTGCCTTGGATGTTGAACAAGCGAACAG
CAGTGGCCCATCTGTGGTACGCGGCCAGAGGAGAACACGCGTCGAGCGTC
ACCTGCTGCGCCTCCCTTCTTCAAGCCACCACATACCGCGAGACGCACGC
AACTTGTGCGCTCACACCGAATAGTAATCAAAGAACATTTGAACCCGCGA
TTTTCTGTGGTCAACGCGCACGCATTAATCAGACTGACGCCCTGCTGGTT
TTCCCATTTCAACTGGAATCCCATTTCGACAGGGTCATCGCCCACCCATG
TCACGCCTATTTCTTGCCATCCTCATCCTGGGCATGCTTGCCACCCCTGC
GCTGGCCTTCCTCGCCCCGCTTCCTGTCTCTTATAGCCGCTCGGTGCTTA
CTGCTAACCCGGGATCTCGGGTTTCGCGGGGTAAGTCCACTGAAAGCCTC
CACGTCTTGCTGTCTATCAGCCTCGTCCTCTAACTTAACCTGACATACAC
CACGCACGCCCCACGCCCTTGTAAACACACACAGCCCCCCCTCTCCAAGC
TGGCTCCCTCACGGACTTGTCCCTCCTTATTGCCGCTGCCGCGGATGAGT
ACGAGTACGGTGCGGTAGCTGCTCCGGGTAGGTGTGTTCGATTTCTTACT
TGCTCCTCCCTTGCCTCCTCGATTCCGCCCTAACATCCCCGTTTTTGGCT
GACAGGATGGGTACTGCCTTTAGGAGCCTTTTTGACACTGGGATTAGCGG
TTAGTTATTTAAAGGATGTCTAATCTCTTGTCCTCTCCTGCCATTTTCGG
GTACCTGTTCCCCCACCCTCTGTGACTTTTTTCTCTTCCTTGACTTTGAT
TGATTACATGCTCATTGCACAAGAGGTGCTCATCTTCCTCCTTCTCCTCT
CCCTCGCTCATTCCCCATACTGGATACAGGTGGCCATCCCTCTGGCTCTG
CGACCGGGTACGGAGGCGTTCGAGGAGGAGAAAGGCCGACTGGAGGAGAT
GCGGAGAAACCGAGGGGAGGAGGAGGAGTAAACGGTGAATAGACAGACGA
GGCGATTGAAGAGAGAACAGGAGAGCGAGAGAGGAAGGGGAGTTGCTTTA
ATGGTGACTCTTGTGTGCGGGGAGGGAGAAAGGGAGGAAGAGAGGAAGAG
GGAGTCGATGAGAAAGAGTATATGCATCAATTGATCAAGAGTCATGAACA
CGAAAACGGAAAAAGAGCAAAAAGGTGAGAAGAAGGATTGAATTAAGAGA
GCAGTCAGATAACCAACCCAGAGAACGCCAAGGAAACAACAAACAACCTA
ACGCATCAGGCATCTAAGCCCAGGATCACCTCTCTCCGCCTCATATGTCG
TCGACTTTGTGTCAAAAGAAAGCCTTTCCCTGGGCGAAT
back to top

Coding sequence (CDS) from alignment at scaffold_23:338111..339849-

>mRNA_8313 ID=mRNA_8313|Name=jgi.p|Nanoce1779_2|601545|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_23:338111..339849- (Nannochloropsis oceanica)
CCCCCCCTCTCCAAGCTGGCTCCCTCACGGACTTGTCCCTCCTTATTGCC
GCTGCCGCGGATGAGTACGAGTACGGTGCGGTAGATGATGCTACGAATGA
TAAAAGGTCTGGAACCTATACCAAACGTGCATGCCTGTGCCATAGAGTGC
TCCCGTCACTCGTCACTACATGCTGTGTCACCAGTGGGAACGGTGCCTTG
GATGTTGAACAAGCGAACAGCAGTGGCCCATCTGTGGTACGCGGCCAGAG
GAGAACACGCGTCGAGCGTCACCTGCTGCGCCTCCCTTCTTCAAGCCACC
ACATACCGCGAGACGCACGCAACTTGTGCGCTCACACCGAATAGTAATCA
AAGAACATTTGAACCCGCGATTTTCTGTGGTCAACGCGCACGCATTAATC
AGACTGACGCCCTGCTGGTTTTCCCATTTCAACTGGAATCCCATTTCGAC
AGGGTCATCGCCCACCCATGTCACGCCTATTTCTTGCCATCCTCATCCTG
GGCATGCTTGCCACCCCTGCGCTGGCCTTCCTCGCCCCGCTTCCTGTCTC
TTATAGCCGCTCGGTGCTTACTGCTAACCCGGGATCTCGGGTTTCGCGGG
CCCCCCCTCTCCAAGCTGGCTCCCTCACGGACTTGTCCCTCCTTATTGCC
GCTGCCGCGGATGAGTACGAGTACGGTGCGGTAGATGATGCTACGAATGA
TAAAAGGTCTGGAACCTATACCAAACGTGCATGCCTGTGCCATAGAGTGC
TCCCGTCACTCGTCACTACATGCTGTGTCACCAGTGGGAACGGTGCCTTG
GATGTTGAACAAGCGAACAGCAGTGGCCCATCTGTGGTACGCGGCCAGAG
GAGAACACGCGTCGAGCGTCACCTGCTGCGCCTCCCTTCTTCAAGCCACC
ACATACCGCGAGACGCACGCAACTTGTGCGCTCACACCGAATAGTAATCA
AAGAACATTTGAACCCGCGATTTTCTGTGGTCAACGCGCACGCATTAATC
AGACTGACGCCCTGCTGGTTTTCCCATTTCAACTGGAATCCCATTTCGAC
AGGGTCATCGCCCACCCATGTCACGCCTATTTCTTGCCATCCTCATCCTG
GGCATGCTTGCCACCCCTGCGCTGGCCTTCCTCGCCCCGCTTCCTGTCTC
TTATAGCCGCTCGGTGCTTACTGCTAACCCGGGATCTCGGGTTTCGCGGG
back to top
Synonyms
Publications