jgi.p|Nanoce1779_2|601544, mRNA_8312 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601544
Unique NamemRNA_8312
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length827
Alignment locationscaffold_23:338111..339221 +

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Properties
Property NameValue
TranscriptId601630
TrackFilteredModels2
ProteinId601544
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:338111..339221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601544gene_8312Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601544mRNA_8312-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8312CDS_8312Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8312 ID=mRNA_8312|Name=jgi.p|Nanoce1779_2|601544|organism=Nannochloropsis oceanica|type=mRNA|length=827bp
ATTCGCCCAGGGAAAGGCTTTCTTTTGACACAAAGTCGACGACATATGAG
GCGGAGAGAGGTGATCCTGGGCTTAGATGCCTGATGCGTTAGGTTGTTTG
TTGTTTCCTTGGCGTTCTCTGGGTTGGTTATCTGACTGCTCTCTTAATTC
AATCCTTCTTCTCACCTTTTTGCTCTTTTTCCGTTTTCGTGTTCATGACT
CTTGATCAATTGATGCATATACTCTTTCTCATCGACTCCCTCTTCCTCTC
TTCCTCCCTTTCTCCCTCCCCGCACACAAGAGTCACCATTAAAGCAACTC
CCCTTCCTCTCTCGCTCTCCTGTTCTCTCTTCAATCGCCTCGTCTGTCTA
TTCACCGTTTACTCCTCCTCCTCCCCTCGGTTTCTCCGCATCTCCTCCAG
TCGGCCTTTCTCCTCCTCGAACGCCTCCGTACCCGGTCGCAGAGCCAGAG
GGATGGCCACCGCTAATCCCAGTGTCAAAAAGGCTCCTAAAGGCAGTACC
CATCCTGTCAGCCAAAAACGGGGATGTTAGGGCGGAATCGAGGAGGCAAG
GGAGGAGCAAGTAAGAAATCGAACACACCTACCCGGAGCAGCTACCGCAC
CGTACTCGTACTCATCCGCGGCAGCGGCAATAAGGAGGGACAAGTCCGTG
AGGGAGCCAGCTTGGAGAGGGGGGGCCCGCGAAACCCGAGATCCCGGGTT
AGCAGTAAGCACCGAGCGGCTATAAGAGACAGGAAGCGGGGCGAGGAAGG
CCAGCGCAGGGGTGGCAAGCATGCCCAGGATGAGGATGGCAAGAAATAGG
CGTGACATGGGTGGGCGATGACCCTGT
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protein sequence of jgi.p|Nanoce1779_2|601544

>mRNA_8312-protein ID=mRNA_8312-protein|Name=jgi.p|Nanoce1779_2|601544|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MTLDQLMHILFLIDSLFLSSSLSPSPHTRVTIKATPLPLSLSCSLFNRLV
CLFTVYSSSSPRFLRISSSRPFSSSNASVPGRRARGMATANPSVKKAPKG
STHPVSQKRGC*
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mRNA from alignment at scaffold_23:338111..339221+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8312 ID=mRNA_8312|Name=jgi.p|Nanoce1779_2|601544|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp|location=Sequence derived from alignment at scaffold_23:338111..339221+ (Nannochloropsis oceanica)
ATTCGCCCAGGGAAAGGCTTTCTTTTGACACAAAGTCGACGACATATGAG
GCGGAGAGAGGTGATCCTGGGCTTAGATGCCTGATGCGTTAGGTTGTTTG
TTGTTTCCTTGGCGTTCTCTGGGTTGGTTATCTGACTGCTCTCTTAATTC
AATCCTTCTTCTCACCTTTTTGCTCTTTTTCCGTTTTCGTGTTCATGACT
CTTGATCAATTGATGCATATACTCTTTCTCATCGACTCCCTCTTCCTCTC
TTCCTCCCTTTCTCCCTCCCCGCACACAAGAGTCACCATTAAAGCAACTC
CCCTTCCTCTCTCGCTCTCCTGTTCTCTCTTCAATCGCCTCGTCTGTCTA
TTCACCGTTTACTCCTCCTCCTCCCCTCGGTTTCTCCGCATCTCCTCCAG
TCGGCCTTTCTCCTCCTCGAACGCCTCCGTACCCGGTCGCAGAGCCAGAG
GGATGGCCACCTGTATCCAGTATGGGGAATGAGCGAGGGAGAGGAGAAGG
AGGAAGATGAGCACCTCTTGTGCAATGAGCATGTAATCAATCAAAGTCAA
GGAAGAGAAAAAAGTCACAGAGGGTGGGGGAACAGGTACCCGAAAATGGC
AGGAGAGGACAAGAGATTAGACATCCTTTAAATAACTAACCGCTAATCCC
AGTGTCAAAAAGGCTCCTAAAGGCAGTACCCATCCTGTCAGCCAAAAACG
GGGATGTTAGGGCGGAATCGAGGAGGCAAGGGAGGAGCAAGTAAGAAATC
GAACACACCTACCCGGAGCAGCTACCGCACCGTACTCGTACTCATCCGCG
GCAGCGGCAATAAGGAGGGACAAGTCCGTGAGGGAGCCAGCTTGGAGAGG
GGGGGCTGTGTGTGTTTACAAGGGCGTGGGGCGTGCGTGGTGTATGTCAG
GTTAAGTTAGAGGACGAGGCTGATAGACAGCAAGACGTGGAGGCTTTCAG
TGGACTTACCCCGCGAAACCCGAGATCCCGGGTTAGCAGTAAGCACCGAG
CGGCTATAAGAGACAGGAAGCGGGGCGAGGAAGGCCAGCGCAGGGGTGGC
AAGCATGCCCAGGATGAGGATGGCAAGAAATAGGCGTGACATGGGTGGGC
GATGACCCTGT
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Coding sequence (CDS) from alignment at scaffold_23:338111..339221+

>mRNA_8312 ID=mRNA_8312|Name=jgi.p|Nanoce1779_2|601544|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_23:338111..339221+ (Nannochloropsis oceanica)
ATGACTCTTGATCAATTGATGCATATACTCTTTCTCATCGACTCCCTCTT
CCTCTCTTCCTCCCTTTCTCCCTCCCCGCACACAAGAGTCACCATTAAAG
CAACTCCCCTTCCTCTCTCGCTCTCCTGTTCTCTCTTCAATCGCCTCGTC
TGTCTATTCACCGTTTACTCCTCCTCCTCCCCTCGGTTTCTCCGCATCTC
CTCCAGTCGGCCTTTCTCCTCCTCGAACGCCTCCGTACCCGGTCGCAGAG
CCAGAGGGATGGCCACCGCTAATCCCAGTGTCAAAAAGGCTCCTAAAGGC
AGTACCCATCCTGTCAGCCAAAAACGGGGATGTTAGATGACTCTTGATCA
ATTGATGCATATACTCTTTCTCATCGACTCCCTCTTCCTCTCTTCCTCCC
TTTCTCCCTCCCCGCACACAAGAGTCACCATTAAAGCAACTCCCCTTCCT
CTCTCGCTCTCCTGTTCTCTCTTCAATCGCCTCGTCTGTCTATTCACCGT
TTACTCCTCCTCCTCCCCTCGGTTTCTCCGCATCTCCTCCAGTCGGCCTT
TCTCCTCCTCGAACGCCTCCGTACCCGGTCGCAGAGCCAGAGGGATGGCC
ACCGCTAATCCCAGTGTCAAAAAGGCTCCTAAAGGCAGTACCCATCCTGT
CAGCCAAAAACGGGGATGTTAG
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Synonyms
Publications