jgi.p|Nanoce1779_2|189623, mRNA_8310 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|189623
Unique Name	mRNA_8310
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1590
Alignment location	scaffold_23:327284..329102 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	189709
Track	FilteredModels2
ProteinId	189623

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:327284..329102 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|189623	gene_8310	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|189623	mRNA_8310-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8310	CDS_8310	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:327284..329102-
coding sequence from alignment at scaffold_23:327284..329102-

mRNA sequence

>mRNA_8310 ID=mRNA_8310|Name=jgi.p|Nanoce1779_2|189623|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp
AGAAGAGGTCCGCCTCCACTCCCTCCCTGTCTTCCATTCCTTTTCCCATC
CTCCACCTCTCCCTCAGCCCTCATCGCCTCCTCCTTGGCCTGTCTTTATT
CCCTAGACATTGAAGGGAAGAGAGAGACTCGACCCCCAATGAATGCTTTT
ATTTGAGAGATTGAGAGAGAAGGGAGAGAAGGAGGAAGAGAGGAAGGGAC
AGCGTTTCCTATCCACCGTCTGGTTTTTAATGCACCCCTCTTTCGCTCCT
CCCCTCCCTCCCTCTCTCTCTCTCTCCCTTTCTACCTTCCTCAGGACGGG
GACTACCAGCGCTTCCTGGAGCAGCTCAAGGCAGGCCCCTCGAAGCCCAC
CCCCCTCGACCAGCAGCTGGCAGATGTTGAGGAGGGGGCGAAAGAGGTCA
AGTCTTCAGCCTTGCTCGATTTCATGCTCCAGCAACGGACTGCCAAAAAG
GAAGGAGAAGGAGAGGAAGAAGAAAGGTGAGAGAAAGCAAACATCTAAAG
ACGCAGCACTCAAGAGAAAGAAGCGACTGGAGGAGCGGGAGCAGCAGCAG
CAGGCTTCCCTCCTTGCAACTGCTTTCTTTCCTCCCCTGGGCGGCACCAG
CAGCAGCAGCATCAGCAGCAGCAGTGACGTGTTTCCAACCCTGTCCTTTG
CTGCTGCTCCTCCTTCCTCTCCTCCCGCTCCACTCCCTCCATCTCTTCTT
CCTCAACAGCAACAGCTGCCACAGCAGCTGTCGAGACCGAGAGGAGGAAA
AGGAGGGGCGGAAGAAGGCAGAGTGTCCCTTCCAGCTGCTCTTCCATCAA
CAACCGTTGCTCGGCGGCAGCAGCAACAGCTGCCACCGAGGGGAGAATTG
AGACGAGATGGCGGAGGAGGAGGAGGAGAAGGGGGGGGCAAGGAAAGAGG
GAAGGGAGGGAAGGACGGCAGAGAGAGAAGAGCTGCTGGTAGTGGACAAA
GTGGTGACGGTGGTGGTGGTGGGGGAGGAGGAGGAGGAGGAGGTGGTGGT
AGTGGTGTTGCAAGGGCGAACAGAGGAGGGCAAAGAGGAGAAGGAGGAGT
GAGAAAAGGAGAGGAGCAGCCAAAAGGAGAAAAGATAAAAGGAGGTTGTG
TAAGGGGAAAAACAGGCGAAGGAGAAGGAGTGGTAAAGAGGGGGGAAGCA
GAAGCAAAAAGCGGCGGCGGCGGCGGTAGAGGAGGAGGAAAAAGAGGAGA
AGGAGGAGGAGGAGAAAAAAGAGGAGGAGGAGGAAAAGGAGGAGGGGGAG
GCAGTAACAGTGTGCGAGGGCTTGTCCCTCTTCCGTCTTCCTCTGCTGCT
GACATTAGCCCTTTTCCTTTATCCTCTTCATCTGCCATTGGTCTAGGCGG
CGAAAGAGGAGTGAAGGGTCGTCCTGTTGTTCGCTTGCTGCAGCGGCCCA
AGGAAGAGGGGAGGGAAAGAGGAGGAGGGAGAGGTGGCGAAGGAGGAGGA
GTCTTTTCCTCGTCGGCTTTTACGGCCCCGCCACCTTTGTAAGGCAGGAT
ACACTATATATAGGGAAGGAGAAGAAACTATGCAAAGGTAGGATGAACAT
GCGAACCACAAAATAAGAAATAAGTACAGAAATATCTTCG

protein sequence of jgi.p|Nanoce1779_2|189623

>mRNA_8310-protein ID=mRNA_8310-protein|Name=jgi.p|Nanoce1779_2|189623|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MLLFERLREKGEKEEERKGQRFLSTVWFLMHPSFAPPLPPSLSLSLSTFL
RTGTTSASWSSSRQAPRSPPPSTSSWQMLRRGRKRSSLQPCSISCSSNGL
PKRKEKERKKKGERKQTSKDAALKRKKRLEEREQQQQASLLATAFFPPLG
GTSSSSISSSSDVFPTLSFAAAPPSSPPAPLPPSLLPQQQQLPQQLSRPR
GGKGGAEEGRVSLPAALPSTTVARRQQQQLPPRGELRRDGGGGGGEGGGK
ERGKGGKDGRERRAAGSGQSGDGGGGGGGGGGGGGGSGVARANRGGQRGE
GGVRKGEEQPKGEKIKGGCVRGKTGEGEGVVKRGEAEAKSGGGGGRGGGK
RGEGGGGEKRGGGGKGGGGGSNSVRGLVPLPSSSAADISPFPLSSSSAIG
LGGERGVKGRPVVRLLQRPKEEGRERGGGRGGEGGGVFSSSAFTAPPPL*

mRNA from alignment at scaffold_23:327284..329102-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8310 ID=mRNA_8310|Name=jgi.p|Nanoce1779_2|189623|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp|location=Sequence derived from alignment at scaffold_23:327284..329102- (Nannochloropsis oceanica)
AGAAGAGGTCCGCCTCCACTCCCTCCCTGTCTTCCATTCCTTTTCCCATC
CTCCACCTCTCCCTCAGCCCTCATCGCCTCCTCCTTGGCCTGTCTTTATT
CCCTAGACATTGAAGGGAAGAGAGAGACTCGACCCCCAATGAATGCTTTT
ATTTGAGAGATTGAGAGAGAAGGGAGAGAAGGAGGAAGAGAGGAAGGGAC
AGCGTTTCCTATCCACCGTCTGGTTTTTAATGCACCCCTCTTTCGCTCCT
CCCCTCCCTCCCTCTCTCTCTCTCTCCCTTTCTACCTTCCTCAGGACGGG
GACTACCAGCGCTTCCTGGAGCAGCTCAAGGCAGGCCCCTCGAAGCCCAC
CCCCCTCGACCAGCAGCTGGCAGATGTTGAGGAGGGGGCGAAAGGTAAGG
ATGGAGGGAACGGGGGGGTTGGAGCGAGCTTCATCTCTATCGCGCCGTCT
CTCATCCCCTCCCTCCATCCTTCCCTCCCTTATGCACCCACTCAGAGGTC
AAGTCTTCAGCCTTGCTCGATTTCATGCTCCAGCAACGGACTGCCAAAAA
GGGGAAAGGAGGGAGGGAAGGAGGGCGGGCGGGAGGGCGGGACAGGGACC
GGACCGGGAAGGAGAAGGCAGAGGGGAAGGGGAAAAAGAAGGGAAAAGAG
GGTAAGGATGGAAGAAAGGAGGGGGGTGAGAAGGAGAAGGAGAGGAAGAA
GAAAGGTGAGAGAAAGCAAACATCTAAAGACGCAGCACTCAAGAGAAAGA
AGCGACTGGAGGAGCGGGAGCAGCAGCAGCAGGCTTCCCTCCTTGCAACT
GCTTTCTTTCCTCCCCTGGGCGGCACCAGCAGCAGCAGCATCAGCAGCAG
CAGTGACGTGTTTCCAACCCTGTCCTTTGCTGCTGCTCCTCCTTCCTCTC
CTCCCGCTCCACTCCCTCCATCTCTTCTTCCTCAACAGCAACAGCTGCCA
CAGCAGCTGTCGAGACCGAGAGGAGGAAAAGGAGGGGCGGAAGAAGGCAG
AGTGTCCCTTCCAGCTGCTCTTCCATCAACAACCGTTGCTCGGCGGCAGC
AGCAACAGCTGCCACCGAGGGGAGAATTGAGACGAGATGGCGGAGGAGGA
GGAGGAGAAGGGGGGGGCAAGGAAAGAGGGAAGGGAGGGAAGGACGGCAG
AGAGAGAAGAGCTGCTGGTAGTGGACAAAGTGGTGACGGTGGTGGTGGTG
GGGGAGGAGGAGGAGGAGGAGGTGGTGGTAGTGGTGTTGCAAGGGCGAAC
AGAGGAGGGCAAAGAGGAGAAGGAGGAGTGAGAAAAGGAGAGGAGCAGCC
AAAAGGAGAAAAGATAAAAGGAGGTTGTGTAAGGGGAAAAACAGGCGAAG
GAGAAGGAGTGGTAAAGAGGGGGGAAGCAGAAGCAAAAAGCGGCGGCGGC
GGCGGTAGAGGAGGAGGAAAAAGAGGAGAAGGAGGAGGAGGAGAAAAAAG
AGGAGGAGGAGGAAAAGGAGGAGGGGGAGGCAGTAACAGTGTGCGAGGGC
TTGTCCCTCTTCCGTCTTCCTCTGCTGCTGACATTAGCCCTTTTCCTTTA
TCCTCTTCATCTGCCATTGGTCTAGGCGGCGAAAGAGGAGTGAAGGGTCG
TCCTGTTGTTCGCTTGCTGCAGCGGCCCAAGGAAGAGGGGAGGGAAAGAG
GAGGAGGGAGAGGTGGCGAAGGAGGAGGAGTCTTTTCCTCGTCGGCTTTT
ACGGCCCCGCCACCTTTGTAAGGCAGGATACACTATATATAGGGAAGGAG
AAGAAACTATGCAAAGGTAGGATGAACATGCGAACCACAAAATAAGAAAT
AAGTACAGAAATATCTTCG

Coding sequence (CDS) from alignment at scaffold_23:327284..329102-

>mRNA_8310 ID=mRNA_8310|Name=jgi.p|Nanoce1779_2|189623|organism=Nannochloropsis oceanica|type=CDS|length=4050bp|location=Sequence derived from alignment at scaffold_23:327284..329102- (Nannochloropsis oceanica)
AAGGAGAAGGAGAGGAAGAAGAAAGGTGAGAGAAAGCAAACATCTAAAGA
CGCAGCACTCAAGAGAAAGAAGCGACTGGAGGAGCGGGAGCAGCAGCAGC
AGGCTTCCCTCCTTGCAACTGCTTTCTTTCCTCCCCTGGGCGGCACCAGC
AGCAGCAGCATCAGCAGCAGCAGTGACGTGTTTCCAACCCTGTCCTTTGC
TGCTGCTCCTCCTTCCTCTCCTCCCGCTCCACTCCCTCCATCTCTTCTTC
CTCAACAGCAACAGCTGCCACAGCAGCTGTCGAGACCGAGAGGAGGAAAA
GGAGGGGCGGAAGAAGGCAGAGTGTCCCTTCCAGCTGCTCTTCCATCAAC
AACCGTTGCTCGGCGGCAGCAGCAACAGCTGCCACCGAGGGGAGAATTGA
GACGAGATGGCGGAGGAGGAGGAGGAGAAGGGGGGGGCAAGGAAAGAGGG
AAGGGAGGGAAGGACGGCAGAGAGAGAAGAGCTGCTGGTAGTGGACAAAG
TGGTGACGGTGGTGGTGGTGGGGGAGGAGGAGGAGGAGGAGGTGGTGGTA
GTGGTGTTGCAAGGGCGAACAGAGGAGGGCAAAGAGGAGAAGGAGGAGTG
AGAAAAGGAGAGGAGCAGCCAAAAGGAGAAAAGATAAAAGGAGGTTGTGT
AAGGGGAAAAACAGGCGAAGGAGAAGGAGTGGTAAAGAGGGGGGAAGCAG
AAGCAAAAAGCGGCGGCGGCGGCGGTAGAGGAGGAGGAAAAAGAGGAGAA
GGAGGAGGAGGAGAAAAAAGAGGAGGAGGAGGAAAAGGAGGAGGGGGAGG
CAGTAACAGTGTGCGAGGGCTTGTCCCTCTTCCGTCTTCCTCTGCTGCTG
ACATTAGCCCTTTTCCTTTATCCTCTTCATCTGCCATTGGTCTAGGCGGC
GAAAGAGGAGTGAAGGGTCGTCCTGTTGTTCGCTTGCTGCAGCGGCCCAA
GGAAGAGGGGAGGGAAAGAGGAGGAGGGAGAGGTGGCGAAGGAGGAGGAG
TCTTTTCCTCGTCGGCTTTTACGGCCCCGCCACCTTTGTAAAGGTCAAGT
CTTCAGCCTTGCTCGATTTCATGCTCCAGCAACGGACTGCCAAAAAGGAT
GCTTTTATTTGAGAGATTGAGAGAGAAGGGAGAGAAGGAGGAAGAGAGGA
AGGGACAGCGTTTCCTATCCACCGTCTGGTTTTTAATGCACCCCTCTTTC
GCTCCTCCCCTCCCTCCCTCTCTCTCTCTCTCCCTTTCTACCTTCCTCAG
GACGGGGACTACCAGCGCTTCCTGGAGCAGCTCAAGGCAGGCCCCTCGAA
GCCCACCCCCCTCGACCAGCAGCTGGCAGATGTTGAGGAGGGGGCGAAAG
AAGGAGAAGGAGAGGAAGAAGAAAGGTGAGAGAAAGCAAACATCTAAAGA
CGCAGCACTCAAGAGAAAGAAGCGACTGGAGGAGCGGGAGCAGCAGCAGC
AGGCTTCCCTCCTTGCAACTGCTTTCTTTCCTCCCCTGGGCGGCACCAGC
AGCAGCAGCATCAGCAGCAGCAGTGACGTGTTTCCAACCCTGTCCTTTGC
TGCTGCTCCTCCTTCCTCTCCTCCCGCTCCACTCCCTCCATCTCTTCTTC
CTCAACAGCAACAGCTGCCACAGCAGCTGTCGAGACCGAGAGGAGGAAAA
GGAGGGGCGGAAGAAGGCAGAGTGTCCCTTCCAGCTGCTCTTCCATCAAC
AACCGTTGCTCGGCGGCAGCAGCAACAGCTGCCACCGAGGGGAGAATTGA
GACGAGATGGCGGAGGAGGAGGAGGAGAAGGGGGGGGCAAGGAAAGAGGG
AAGGGAGGGAAGGACGGCAGAGAGAGAAGAGCTGCTGGTAGTGGACAAAG
TGGTGACGGTGGTGGTGGTGGGGGAGGAGGAGGAGGAGGAGGTGGTGGTA
GTGGTGTTGCAAGGGCGAACAGAGGAGGGCAAAGAGGAGAAGGAGGAGTG
AGAAAAGGAGAGGAGCAGCCAAAAGGAGAAAAGATAAAAGGAGGTTGTGT
AAGGGGAAAAACAGGCGAAGGAGAAGGAGTGGTAAAGAGGGGGGAAGCAG
AAGCAAAAAGCGGCGGCGGCGGCGGTAGAGGAGGAGGAAAAAGAGGAGAA
GGAGGAGGAGGAGAAAAAAGAGGAGGAGGAGGAAAAGGAGGAGGGGGAGG
CAGTAACAGTGTGCGAGGGCTTGTCCCTCTTCCGTCTTCCTCTGCTGCTG
ACATTAGCCCTTTTCCTTTATCCTCTTCATCTGCCATTGGTCTAGGCGGC
GAAAGAGGAGTGAAGGGTCGTCCTGTTGTTCGCTTGCTGCAGCGGCCCAA
GGAAGAGGGGAGGGAAAGAGGAGGAGGGAGAGGTGGCGAAGGAGGAGGAG
TCTTTTCCTCGTCGGCTTTTACGGCCCCGCCACCTTTGTAAAGGTCAAGT
CTTCAGCCTTGCTCGATTTCATGCTCCAGCAACGGACTGCCAAAAAGGAT
GCTTTTATTTGAGAGATTGAGAGAGAAGGGAGAGAAGGAGGAAGAGAGGA
AGGGACAGCGTTTCCTATCCACCGTCTGGTTTTTAATGCACCCCTCTTTC
GCTCCTCCCCTCCCTCCCTCTCTCTCTCTCTCCCTTTCTACCTTCCTCAG
GACGGGGACTACCAGCGCTTCCTGGAGCAGCTCAAGGCAGGCCCCTCGAA
GCCCACCCCCCTCGACCAGCAGCTGGCAGATGTTGAGGAGGGGGCGAAAG
AAGGAGAAGGAGAGGAAGAAGAAAGGTGAGAGAAAGCAAACATCTAAAGA
CGCAGCACTCAAGAGAAAGAAGCGACTGGAGGAGCGGGAGCAGCAGCAGC
AGGCTTCCCTCCTTGCAACTGCTTTCTTTCCTCCCCTGGGCGGCACCAGC
AGCAGCAGCATCAGCAGCAGCAGTGACGTGTTTCCAACCCTGTCCTTTGC
TGCTGCTCCTCCTTCCTCTCCTCCCGCTCCACTCCCTCCATCTCTTCTTC
CTCAACAGCAACAGCTGCCACAGCAGCTGTCGAGACCGAGAGGAGGAAAA
GGAGGGGCGGAAGAAGGCAGAGTGTCCCTTCCAGCTGCTCTTCCATCAAC
AACCGTTGCTCGGCGGCAGCAGCAACAGCTGCCACCGAGGGGAGAATTGA
GACGAGATGGCGGAGGAGGAGGAGGAGAAGGGGGGGGCAAGGAAAGAGGG
AAGGGAGGGAAGGACGGCAGAGAGAGAAGAGCTGCTGGTAGTGGACAAAG
TGGTGACGGTGGTGGTGGTGGGGGAGGAGGAGGAGGAGGAGGTGGTGGTA
GTGGTGTTGCAAGGGCGAACAGAGGAGGGCAAAGAGGAGAAGGAGGAGTG
AGAAAAGGAGAGGAGCAGCCAAAAGGAGAAAAGATAAAAGGAGGTTGTGT
AAGGGGAAAAACAGGCGAAGGAGAAGGAGTGGTAAAGAGGGGGGAAGCAG
AAGCAAAAAGCGGCGGCGGCGGCGGTAGAGGAGGAGGAAAAAGAGGAGAA
GGAGGAGGAGGAGAAAAAAGAGGAGGAGGAGGAAAAGGAGGAGGGGGAGG
CAGTAACAGTGTGCGAGGGCTTGTCCCTCTTCCGTCTTCCTCTGCTGCTG
ACATTAGCCCTTTTCCTTTATCCTCTTCATCTGCCATTGGTCTAGGCGGC
GAAAGAGGAGTGAAGGGTCGTCCTGTTGTTCGCTTGCTGCAGCGGCCCAA
GGAAGAGGGGAGGGAAAGAGGAGGAGGGAGAGGTGGCGAAGGAGGAGGAG
TCTTTTCCTCGTCGGCTTTTACGGCCCCGCCACCTTTGTAAAGGTCAAGT
CTTCAGCCTTGCTCGATTTCATGCTCCAGCAACGGACTGCCAAAAAGGAT
GCTTTTATTTGAGAGATTGAGAGAGAAGGGAGAGAAGGAGGAAGAGAGGA
AGGGACAGCGTTTCCTATCCACCGTCTGGTTTTTAATGCACCCCTCTTTC
GCTCCTCCCCTCCCTCCCTCTCTCTCTCTCTCCCTTTCTACCTTCCTCAG
GACGGGGACTACCAGCGCTTCCTGGAGCAGCTCAAGGCAGGCCCCTCGAA
GCCCACCCCCCTCGACCAGCAGCTGGCAGATGTTGAGGAGGGGGCGAAAG

Synonyms

Publications