jgi.p|Nanoce1779_2|601518, mRNA_8309 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601518
Unique Name	mRNA_8309
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1959
Alignment location	scaffold_23:325184..327245 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601604
Track	FilteredModels2
ProteinId	601518

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:325184..327245 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601518	gene_8309	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601518	mRNA_8309-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8309	CDS_8309	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:325184..327245+
coding sequence from alignment at scaffold_23:325184..327245+

mRNA sequence

>mRNA_8309 ID=mRNA_8309|Name=jgi.p|Nanoce1779_2|601518|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp
GCGGTTACATGTTCTGGTCTTCTAATGAGGACTTGAATTTATAGTTGTCT
TCCACTACATGATTAAACTTTGTTTGATGTGTTACAATTAACACGAGTAC
CCACACCTTTAGGTGATTAGTAGAGATCCACTCAGTGCTCAAGCGCTTCG
CCCAACCCCGCGTTTCTCAGGAGTATTGCCTGCACATCTTTAGAAGAGGT
CGGCCAACGGCTACATCAAAGGGGCCCATAATGCCCTCGAAGGCTAATTT
ATAATAGCCTGTATTGTATTGTATACTATACAGAAGACTTTGACGTGAAG
ATGTTATCTTCGTCAAGCACCCTTCGACCCCTCGGGCCAACAGTACACAC
ACAGATTGACTTGGGCCGTGTTTCAATGCCTTGGTATTTGAGCACGTCAA
AGCCCCTTCGCCGTTAGTAACATAACGTATGAAATACTATCATATCTCTG
ACCCAACAGCCAGCCCCTCCATCCCCCTAAAATGCAGTTTCTCGTGACCG
ACCAATACAACCTCGTCACCACCTAAGACATCCAAATTCTTGGAACAAAA
CAAGAGTAACATGGGATCAGTTATGTCGTGCTACCCTTCTTCGGGTTGCA
ACGGCATTCCAACTAACAGCTCACTCCAGTCTAATTTTTCCAGCTGTGTG
GAGTTTTGTGAAGGATTCTCATTGGATTATTTCACCCTTGATCGTGTCAC
CGGGTCCTGTGCCTGTTTTGAAAGCGACGAATGTACGGAGGCCGTCTACT
TGGAGGACCAAGTTACTTCCGTCCTCTACACTTTGAACGATTCAAATCAT
CCTTGCCCGTCCATACCCTTCACGTCTTGCACTTCCAGTAACCTTACGTG
CGATTTAAGTTCTGCGACCTTTAATAAGGGTGCGGTCAGTGGGATGCAAG
AGTGTGTCGACTCGGCCGTCGGCACCAACCCGCGCATTTTGCACGCATTT
TACAACCCCACCGCAGAATTTTGCAACGGATTCACGGCTGCAGATTGCTC
CGATGGGCTGGTAACTAATACGGGCTACGAGAGCGCGATAGTTCAGTACA
CGAACTCTAACGCCACCTGTCTTGAACCTTGCAAGGATATCGACCCTGAT
AATTACTTCAAGAGGATCACTGCCAGAGCTGGGAACAGCAAGACCGGCCA
TCTGCCGGGCAAGTCCATGCGCTACACACTCACCCTCGTCCCCCACAAGA
TGCAGCCTTCTCCCCCGCTTCAAAGCTCCCTGGACTTACGCGTCAACCTC
TCGTCGTTCTTGAAGGTCACCAAGACTCATGTGAAGGGGGATACCAGAAA
CAGCAAAGTGCTTCCGGCCGTCATCGACCACGTCGCGGACACGGTGACCT
GGGAGGGTATAGGGGCCGCGCTACTGGGTGTGGGTTCTAAGCGATCAATG
CCCAATAAGCTCACCTTTAATATCGTTGCCACCCTCGCAAGTGACATCCC
CAAAGATGCTGACTTAGAGATTGAGGCTTTCCTTTTCGATGAAGGCAATG
TCTGCAATGTTCTAGTTGCGGAGACAAGCCTCCTAGTGCGGGACCCCATC
AAAGGTTAGCATCTCGCATCTATTGCGCGAGAAACCTATAAACGATTCAT
AAGCTGGTAATGAATCCGATGCCCGCGAGCAATTCGCGGAATCGAGTAAC
AGCAAATGTGTGAAATGCAAATAATATTGGAATTAAAACACGTGAAGCCT
ACCAGGGTATCACGGACGTGCATCCCATGCCCATCATCTGGAGAGGATAA
AAAAAGCGCGACCGTCAAGTACGGCGACCTCATCAACACGATACTCTAGA
CCAATGTTGAGGAGCAATTTTAATAGTGGACCGCAACAGAAATCTAAGTG
TGGAGGTGATAAGTGTTGACATAAATCCAATAATAAATAATGAACGCGAT
CTTTCTGATCGATGATGCAAAAACGAGTAGCCACTCTATCGGTCATCGCT
ACCTCTCGG

protein sequence of jgi.p|Nanoce1779_2|601518

>mRNA_8309-protein ID=mRNA_8309-protein|Name=jgi.p|Nanoce1779_2|601518|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MGSVMSCYPSSGCNGIPTNSSLQSNFSSCVEFCEGFSLDYFTLDRVTGSC
ACFESDECTEAVYLEDQVTSVLYTLNDSNHPCPSIPFTSCTSSNLTCDLS
SATFNKGAVSGMQECVDSAVGTNPRILHAFYNPTAEFCNGFTAADCSDGL
VTNTGYESAIVQYTNSNATCLEPCKDIDPDNYFKRITARAGNSKTGHLPG
KSMRYTLTLVPHKMQPSPPLQSSLDLRVNLSSFLKVTKTHVKGDTRNSKV
LPAVIDHVADTVTWEGIGAALLGVGSKRSMPNKLTFNIVATLASDIPKDA
DLEIEAFLFDEGNVCNVLVAETSLLVRDPIKG*

mRNA from alignment at scaffold_23:325184..327245+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8309 ID=mRNA_8309|Name=jgi.p|Nanoce1779_2|601518|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp|location=Sequence derived from alignment at scaffold_23:325184..327245+ (Nannochloropsis oceanica)
GCGGTTACATGTTCTGGTCTTCTAATGAGGACTTGAATTTATAGTTGTCT
TCCACTACATGATTAAACTTTGTTTGATGTGTTACAATTAACACGAGTAC
CCACACCTTTAGGTGATTAGTAGAGATCCACTCAGTGCTCAAGCGCTTCG
CCCAACCCCGCGTTTCTCAGGAGTATTGCCTGCACATCTTTAGAAGAGGT
CGGCCAACGGCTACATCAAAGGGGCCCATAATGCCCTCGAAGGCTAATTT
ATAATAGCCTGTATTGTATTGTATACTATACAGAAGACTTTGACGTGAAG
ATGTTATCTTCGTCAAGCACCCTTCGACCCCTCGGGCCAACAGTACACAC
ACAGATTGACTTGGGCCGTGTTTCAATGCCTTGGTATTTGAGCACGTCAA
AGCCCCTTCGCCGTTAGTAACATAACGTATGAAATACTATCATATCTCTG
ACCCAACAGCCAGCCCCTCCATCCCCCTAAAATGCAGTTTCTCGTGACCG
ACCAATACAACCTCGTCACCACCTAAGACATCCAAATTCTTGGAACAAAA
CAAGAGTAACATGGGATCAGTTATGTCGTGCTACCCTTCTTCGGGTTGCA
ACGGCATTCCAACTAACAGCTCACTCCAGTCTAATTTTTCCAGCTGTGTG
GAGTTTTGTGAAGGATTCTCATTGGATTATTTCACCCTTGATCGTGTCAC
CGGGTCCTGTGCCTGTTTTGAAAGCGACGAATGTACGGAGGCCGTCTACT
TGGAGGACCAAGTTACTTCCGTCCTCTACACTTTGAACGATTCAGTAAGT
TTTATGCTAAACGCATACTTTAAGTTTCTTAGAGGGATGCTTAGATGAGC
GTGAATATCCCATCGCTTTTACTCATCAACACCAACTTCTTGGGCAGAAT
CATCCTTGCCCGTCCATACCCTTCACGTCTTGCACTTCCAGTAACCTTAC
GTGCGATTTAAGTTCTGCGACCTTTAATAAGGGTGCGGTCAGTGGGATGC
AAGAGTGTGTCGACTCGGCCGTCGGCACCAACCCGCGCATTTTGCACGCA
TTTTACAACCCCACCGCAGAATTTTGCAACGGATTCACGGCTGCAGATTG
CTCCGATGGGCTGGTAACTAATACGGGCTACGAGAGCGCGATAGTTCAGT
ACACGAACTCTAACGCCACCTGTCTTGAACCTTGCAAGGATATCGACCCT
GATAATTACTTCAAGAGGATCACTGCCAGAGCTGGGAACAGCAAGACCGG
CCATCTGCCGGGCAAGTCCATGCGCTACACACTCACCCTCGTCCCCCACA
AGATGCAGCCTTCTCCCCCGCTTCAAAGCTCCCTGGACTTACGCGTCAAC
CTCTCGTCGTTCTTGAAGGTCACCAAGACTCATGTGAAGGGGGATACCAG
AAACAGCAAAGTGCTTCCGGCCGTCATCGACCACGTCGCGGACACGGTGA
CCTGGGAGGGTATAGGGGCCGCGCTACTGGGTGTGGGTTCTAAGCGATCA
ATGCCCAATAAGCTCACCTTTAATATCGTTGCCACCCTCGCAAGTGACAT
CCCCAAAGATGCTGACTTAGAGATTGAGGCTTTCCTTTTCGATGAAGGCA
ATGTCTGCAATGTTCTAGTTGCGGAGACAAGCCTCCTAGTGCGGGACCCC
ATCAAAGGTTAGCATCTCGCATCTATTGCGCGAGAAACCTATAAACGATT
CATAAGCTGGTAATGAATCCGATGCCCGCGAGCAATTCGCGGAATCGAGT
AACAGCAAATGTGTGAAATGCAAATAATATTGGAATTAAAACACGTGAAG
CCTACCAGGGTATCACGGACGTGCATCCCATGCCCATCATCTGGAGAGGA
TAAAAAAAGCGCGACCGTCAAGTACGGCGACCTCATCAACACGATACTCT
AGACCAATGTTGAGGAGCAATTTTAATAGTGGACCGCAACAGAAATCTAA
GTGTGGAGGTGATAAGTGTTGACATAAATCCAATAATAAATAATGAACGC
GATCTTTCTGATCGATGATGCAAAAACGAGTAGCCACTCTATCGGTCATC
GCTACCTCTCGG

Coding sequence (CDS) from alignment at scaffold_23:325184..327245+

>mRNA_8309 ID=mRNA_8309|Name=jgi.p|Nanoce1779_2|601518|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at scaffold_23:325184..327245+ (Nannochloropsis oceanica)
ATGGGATCAGTTATGTCGTGCTACCCTTCTTCGGGTTGCAACGGCATTCC
AACTAACAGCTCACTCCAGTCTAATTTTTCCAGCTGTGTGGAGTTTTGTG
AAGGATTCTCATTGGATTATTTCACCCTTGATCGTGTCACCGGGTCCTGT
GCCTGTTTTGAAAGCGACGAATGTACGGAGGCCGTCTACTTGGAGGACCA
AGTTACTTCCGTCCTCTACACTTTGAACGATTCAAATCATCCTTGCCCGT
CCATACCCTTCACGTCTTGCACTTCCAGTAACCTTACGTGCGATTTAAGT
TCTGCGACCTTTAATAAGGGTGCGGTCAGTGGGATGCAAGAGTGTGTCGA
CTCGGCCGTCGGCACCAACCCGCGCATTTTGCACGCATTTTACAACCCCA
CCGCAGAATTTTGCAACGGATTCACGGCTGCAGATTGCTCCGATGGGCTG
GTAACTAATACGGGCTACGAGAGCGCGATAGTTCAGTACACGAACTCTAA
CGCCACCTGTCTTGAACCTTGCAAGGATATCGACCCTGATAATTACTTCA
AGAGGATCACTGCCAGAGCTGGGAACAGCAAGACCGGCCATCTGCCGGGC
AAGTCCATGCGCTACACACTCACCCTCGTCCCCCACAAGATGCAGCCTTC
TCCCCCGCTTCAAAGCTCCCTGGACTTACGCGTCAACCTCTCGTCGTTCT
TGAAGGTCACCAAGACTCATGTGAAGGGGGATACCAGAAACAGCAAAGTG
CTTCCGGCCGTCATCGACCACGTCGCGGACACGGTGACCTGGGAGGGTAT
AGGGGCCGCGCTACTGGGTGTGGGTTCTAAGCGATCAATGCCCAATAAGC
TCACCTTTAATATCGTTGCCACCCTCGCAAGTGACATCCCCAAAGATGCT
GACTTAGAGATTGAGGCTTTCCTTTTCGATGAAGGCAATGTCTGCAATGT
TCTAGTTGCGGAGACAAGCCTCCTAGTGCGGGACCCCATCAAAGGTTAGA
TGGGATCAGTTATGTCGTGCTACCCTTCTTCGGGTTGCAACGGCATTCCA
ACTAACAGCTCACTCCAGTCTAATTTTTCCAGCTGTGTGGAGTTTTGTGA
AGGATTCTCATTGGATTATTTCACCCTTGATCGTGTCACCGGGTCCTGTG
CCTGTTTTGAAAGCGACGAATGTACGGAGGCCGTCTACTTGGAGGACCAA
GTTACTTCCGTCCTCTACACTTTGAACGATTCAAATCATCCTTGCCCGTC
CATACCCTTCACGTCTTGCACTTCCAGTAACCTTACGTGCGATTTAAGTT
CTGCGACCTTTAATAAGGGTGCGGTCAGTGGGATGCAAGAGTGTGTCGAC
TCGGCCGTCGGCACCAACCCGCGCATTTTGCACGCATTTTACAACCCCAC
CGCAGAATTTTGCAACGGATTCACGGCTGCAGATTGCTCCGATGGGCTGG
TAACTAATACGGGCTACGAGAGCGCGATAGTTCAGTACACGAACTCTAAC
GCCACCTGTCTTGAACCTTGCAAGGATATCGACCCTGATAATTACTTCAA
GAGGATCACTGCCAGAGCTGGGAACAGCAAGACCGGCCATCTGCCGGGCA
AGTCCATGCGCTACACACTCACCCTCGTCCCCCACAAGATGCAGCCTTCT
CCCCCGCTTCAAAGCTCCCTGGACTTACGCGTCAACCTCTCGTCGTTCTT
GAAGGTCACCAAGACTCATGTGAAGGGGGATACCAGAAACAGCAAAGTGC
TTCCGGCCGTCATCGACCACGTCGCGGACACGGTGACCTGGGAGGGTATA
GGGGCCGCGCTACTGGGTGTGGGTTCTAAGCGATCAATGCCCAATAAGCT
CACCTTTAATATCGTTGCCACCCTCGCAAGTGACATCCCCAAAGATGCTG
ACTTAGAGATTGAGGCTTTCCTTTTCGATGAAGGCAATGTCTGCAATGTT
CTAGTTGCGGAGACAAGCCTCCTAGTGCGGGACCCCATCAAAGGTTAG

Synonyms

Publications