jgi.p|Nanoce1779_2|601506, mRNA_8306 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601506
Unique NamemRNA_8306
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length839
Alignment locationscaffold_23:318341..319179 +

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Properties
Property NameValue
TranscriptId601592
TrackFilteredModels2
ProteinId601506
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:318341..319179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601506gene_8306Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601506mRNA_8306-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8306CDS_8306Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8306 ID=mRNA_8306|Name=jgi.p|Nanoce1779_2|601506|organism=Nannochloropsis oceanica|type=mRNA|length=839bp
AGATGAAGAGCGCCATGGGAAGCAGCGGCACCCCAGACCCGCGCAAGCCC
AAGATTTCTCTTGCCAGCGGCTTCCTTCCCCCACCACGAAGCACAGCCAA
ATGGACCGTAGAGAGCATGGGTGTCAGTGCTGCTGTATCGCCCTCTCCCT
CCAATTCCTCCTTCCCCTGCAGTCCTCAATCCTTTATTTTGATCTTGGAA
TTCGTAGACAAGGAAAATATGACTCAGGTCTTGGGGCGGATCAGTGCCTT
CAGTGAAGGCAAGGTTGGGAAGGGCAAGAAAAGTGAAGCAGCTGCAGGGG
AGACCAGCAAAGGATATTTCGGACACAATTTTCCCCTGACCGTCCTGGAG
GATTTTGTTCAAGTGCACGGAGGAGGAGGGGAAGGAGGAAAGGAGAGAGG
GTGTGGAGATGGTTTGACGGACGGTGAGCGGGACCTGCTAGCGATATGTC
GGAAGCAGGAATTGATGGGCAAAGGAGAGGGAAAAGGGGGAGGAGGCGGA
GGAGGGAGCAAGAAAGGCGGCGGTGGAAGAGGAAGATGTCTAGCGGCCTC
TGCCTACTTGATCGCATATTTAAAGAACGACTACGCCACCAAGCAGCATG
AGCTGCGGCATGCACGCTTTTTCCTGGACGAGGGCTACCGGTCGGCGTGT
CTAGAGGCTTGGGCTCGGCTGTCAGAGAAGCAAAAAAAGTACGTGTCCTC
CTTTCTATCGCGGCTCGGGTACCATGAAGATGTGCACGTGGATGAGTTCC
AGGCGTTTCATTTAACGGAGAAGGCGAATTTTTGGGGGATCAAGGTGGAC
GTGGCCTGGCCGGCGTCGGTGGTGGAGGGGGAGTGATGA
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protein sequence of jgi.p|Nanoce1779_2|601506

>mRNA_8306-protein ID=mRNA_8306-protein|Name=jgi.p|Nanoce1779_2|601506|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MKSAMGSSGTPDPRKPKISLASGFLPPPRSTAKWTVESMGVSAAVSPSPS
NSSFPCSPQSFILILEFVDKENMTQVLGRISAFSEGKVGKGKKSEAAAGE
TSKGYFGHNFPLTVLEDFVQVHGGGGEGGKERGCGDGLTDGERDLLAICR
KQELMGKGEGKGGGGGGGSKKGGGGRGRCLAASAYLIAYLKNDYATKQHE
LRHARFFLDEGYRSACLEAWARLSEKQKKYVSSFLSRLGYHEDVHVDEFQ
AFHLTEKANFWGIKVDVAWPASVVEGE*
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mRNA from alignment at scaffold_23:318341..319179+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8306 ID=mRNA_8306|Name=jgi.p|Nanoce1779_2|601506|organism=Nannochloropsis oceanica|type=mRNA|length=839bp|location=Sequence derived from alignment at scaffold_23:318341..319179+ (Nannochloropsis oceanica)
AGATGAAGAGCGCCATGGGAAGCAGCGGCACCCCAGACCCGCGCAAGCCC
AAGATTTCTCTTGCCAGCGGCTTCCTTCCCCCACCACGAAGCACAGCCAA
ATGGACCGTAGAGAGCATGGGTGTCAGTGCTGCTGTATCGCCCTCTCCCT
CCAATTCCTCCTTCCCCTGCAGTCCTCAATCCTTTATTTTGATCTTGGAA
TTCGTAGACAAGGAAAATATGACTCAGGTCTTGGGGCGGATCAGTGCCTT
CAGTGAAGGCAAGGTTGGGAAGGGCAAGAAAAGTGAAGCAGCTGCAGGGG
AGACCAGCAAAGGATATTTCGGACACAATTTTCCCCTGACCGTCCTGGAG
GATTTTGTTCAAGTGCACGGAGGAGGAGGGGAAGGAGGAAAGGAGAGAGG
GTGTGGAGATGGTTTGACGGACGGTGAGCGGGACCTGCTAGCGATATGTC
GGAAGCAGGAATTGATGGGCAAAGGAGAGGGAAAAGGGGGAGGAGGCGGA
GGAGGGAGCAAGAAAGGCGGCGGTGGAAGAGGAAGATGTCTAGCGGCCTC
TGCCTACTTGATCGCATATTTAAAGAACGACTACGCCACCAAGCAGCATG
AGCTGCGGCATGCACGCTTTTTCCTGGACGAGGGCTACCGGTCGGCGTGT
CTAGAGGCTTGGGCTCGGCTGTCAGAGAAGCAAAAAAAGTACGTGTCCTC
CTTTCTATCGCGGCTCGGGTACCATGAAGATGTGCACGTGGATGAGTTCC
AGGCGTTTCATTTAACGGAGAAGGCGAATTTTTGGGGGATCAAGGTGGAC
GTGGCCTGGCCGGCGTCGGTGGTGGAGGGGGAGTGATGA
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Coding sequence (CDS) from alignment at scaffold_23:318341..319179+

>mRNA_8306 ID=mRNA_8306|Name=jgi.p|Nanoce1779_2|601506|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_23:318341..319179+ (Nannochloropsis oceanica)
ATGAAGAGCGCCATGGGAAGCAGCGGCACCCCAGACCCGCGCAAGCCCAA
GATTTCTCTTGCCAGCGGCTTCCTTCCCCCACCACGAAGCACAGCCAAAT
GGACCGTAGAGAGCATGGGTGTCAGTGCTGCTGTATCGCCCTCTCCCTCC
AATTCCTCCTTCCCCTGCAGTCCTCAATCCTTTATTTTGATCTTGGAATT
CGTAGACAAGGAAAATATGACTCAGGTCTTGGGGCGGATCAGTGCCTTCA
GTGAAGGCAAGGTTGGGAAGGGCAAGAAAAGTGAAGCAGCTGCAGGGGAG
ACCAGCAAAGGATATTTCGGACACAATTTTCCCCTGACCGTCCTGGAGGA
TTTTGTTCAAGTGCACGGAGGAGGAGGGGAAGGAGGAAAGGAGAGAGGGT
GTGGAGATGGTTTGACGGACGGTGAGCGGGACCTGCTAGCGATATGTCGG
AAGCAGGAATTGATGGGCAAAGGAGAGGGAAAAGGGGGAGGAGGCGGAGG
AGGGAGCAAGAAAGGCGGCGGTGGAAGAGGAAGATGTCTAGCGGCCTCTG
CCTACTTGATCGCATATTTAAAGAACGACTACGCCACCAAGCAGCATGAG
CTGCGGCATGCACGCTTTTTCCTGGACGAGGGCTACCGGTCGGCGTGTCT
AGAGGCTTGGGCTCGGCTGTCAGAGAAGCAAAAAAAGTACGTGTCCTCCT
TTCTATCGCGGCTCGGGTACCATGAAGATGTGCACGTGGATGAGTTCCAG
GCGTTTCATTTAACGGAGAAGGCGAATTTTTGGGGGATCAAGGTGGACGT
GGCCTGGCCGGCGTCGGTGGTGGAGGGGGAGTGA
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Synonyms
Publications