jgi.p|Nanoce1779_2|189402, mRNA_8302 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|189402
Unique NamemRNA_8302
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length855
Alignment locationscaffold_23:309090..310437 +

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Properties
Property NameValue
TranscriptId189488
TrackFilteredModels2
ProteinId189402
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:309090..310437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|189402gene_8302Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|189402mRNA_8302-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8302CDS_8302Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8302 ID=mRNA_8302|Name=jgi.p|Nanoce1779_2|189402|organism=Nannochloropsis oceanica|type=mRNA|length=855bp
GGAGAGGAGAGAAAGATCGTGAAGGGGCATCGGGGCCCTCGTAGCAAAGC
AGTGTACAAGGAAAACCGATACTGCACGCGAGAGCAGCGACGAAAAGCGG
CGACCAAGAAATAGGACTGGGAGAAAAAGAAGAAGGCAAAAACACCACAA
AATATAGTCTCCGCTTAGTTTGATGAAGTCTTTTTGGGAGCTTGAGTTGT
CACATTATAAGGGTGAAGTACAAGAAGAAAATAGGGATATAAAAAAGGGA
AAAGGCCGGGCCATACCCTCTCCAAGGTATTTCGACGCACATGTGCCCCT
CGCCCACATAGTCACCTCCGGTCCATCCGAGACATATCCTCATGATCGCA
TCCCCGTCCTTTTGATGTTTTGTTTCCTGTGTCTATTTTTCTCGCTCTCG
CTTACTTTTGGTTCGCTTGTGTCTTGTGTCCTTTGTTTTGTTCCACGCGG
GGTTGGAGTCCAGGGTCCTGTGGCTATTTTGGCTTGCTTGCTGCTCGCCG
CGCCTTGTGGTTCTGGAAAGCCAACCATTGTCTCTGTTGTTATGTCCTGG
TCTTTTCCGACATCATCTGGCAATGTAGCCCCCACCCTTGACTTAAAACT
GGACAAGCCGCGAGTAATTCCATCCGGCCACCCTGGCCCATGGGGATGAA
GACCCAAGCCAGCCAACAAGCGACCGCTTGACAAACGCAGCACGGAAACC
TCAACATTCCATCCTTCTCGACCTTTGCTTCCCAAACTCTTAGCGGTAAC
CCAACCCTACTCTCGCACGCACAGACACTTCGTTCTCGAGAAAATCAGGA
AGCCATGGCTGTAACCAGCCTCACGGACTTGTGTTTTTGCGGTCCCAAGA
TCCTC
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protein sequence of jgi.p|Nanoce1779_2|189402

>mRNA_8302-protein ID=mRNA_8302-protein|Name=jgi.p|Nanoce1779_2|189402|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MKSFWELELSHYKGEVQEENRDIKKGKGRAIPSPRYFDAHVPLAHIVTSG
PSETYPHDRIPVLLMFCFLCLFFSLSLTFGSLVSCVLCFVPRGVGVQGPV
AILACLLLAAPCGSGKPTIVSVVMSWSFPTSSGNVAPTLDLKLDKPRVIP
SGHPGPWG*
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mRNA from alignment at scaffold_23:309090..310437+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8302 ID=mRNA_8302|Name=jgi.p|Nanoce1779_2|189402|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp|location=Sequence derived from alignment at scaffold_23:309090..310437+ (Nannochloropsis oceanica)
GGAGAGGAGAGAAAGATCGTGAAGGGGCATCGGGGCCCTCGTAGCAAAGC
AGTGTACAAGGAAAACCGATACTGCACGCGAGAGCAGCGACGAAAAGCGG
CGACCAAGAAATAGGACTGGGAGAAAAAGAAGAAGGCAAAAACACCACAA
AATATAGTCTCCGCTTAGTTTGATGAAGTCTTTTTGGGAGCTTGAGTTGT
CACATTATAAGGGTGAAGTACAAGAAGAAAATAGGGATATAAAAAAGGGA
AAAGGCCGGGCCATACCCTCTCCAAGGTATTTCGACGCACATGTGCCCCT
CGCCCACATAGTCACCTCCGGTCCATCCGAGACATATCCTCATGATCGCA
TCCCCGTCCTTTTGATGTTTTGTTTCCTGTGTCTATTTTTCTCGCTCTCG
CTTACTTTTGGTTCGCTTGTGTCTTGTGTCCTTTGTTTTGTTCCACGCGG
GGTTGGAGTCCAGGGTCCTGTGGCTATTTTGGCTTGCTTGCTGCTCGCCG
CGCCTTGTGGTTCTGGAAAGCCAACCATTGTCTCTGTTGTTATGTCCTGG
TCTTTTCCGACATCATCTGGCAATGTAGCCCCCACCCTTGACTTAAAACT
GGACAAGCCGCGAGTAATTCCATCCGGCCACCCTGGCCCATGGGGATGAA
GACCCAAGCCAGCCAACAAGCGACCGCTTGACAAACGCAGCACGGAAACC
TCAACATTCCATCCTTCTCGACCTTTGCTTCCCAAACTCTTAGCGGTAAC
CCAACCCTACTCTCGCACGCACAGACACTTCGTTCTCGAGAAAATCAGGA
AGCCATGGCTGTAACCAGCCTCACGGACTTGTGTTTTTGCGGTAAGTCTC
AAGTCAAATGCTCTCACTCCATCAATGAGCTGCTGTGTGAGGGAGGGATT
GAAGTTTGCATGGCAGCCACTGCAGCAACAGCCGCACCAGCACTGCTGCC
TGCACGCTTGGTGGATGTGTTGGTGTGCTGGAGCCTGATGTGGCTGGAGC
CTGTTGCAAGCCAGGGTTTGAAAGCATGCAGCGATGGTTGTGCGTGGGCA
TAGCTAGTGGTTGGGATCGGGGACAAAAGTCGTGGTGGTTGGGGACGGCC
GGGCTGCTGGACTGCTGCGGAGGCCACGACACGCGGACATGCACACATTT
ACCAACACACCCTCTCTACCACACAAACAAGGCCTTAAAGGCCATATGAT
TGGATCTCCCTCATCCTCACCCGGACTTGCGGGTATTTTCTCCCTCCGTC
TGGGAAAAACATTTGTGATTTTTTGGATTACGACAACTCTCACGCTCTCT
CCGACACCATCCAACATAACCCGACAAATGAAAGGTCCCAAGATCCTC
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Coding sequence (CDS) from alignment at scaffold_23:309090..310437+

>mRNA_8302 ID=mRNA_8302|Name=jgi.p|Nanoce1779_2|189402|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_23:309090..310437+ (Nannochloropsis oceanica)
ATGAAGTCTTTTTGGGAGCTTGAGTTGTCACATTATAAGGGTGAAGTACA
AGAAGAAAATAGGGATATAAAAAAGGGAAAAGGCCGGGCCATACCCTCTC
CAAGGTATTTCGACGCACATGTGCCCCTCGCCCACATAGTCACCTCCGGT
CCATCCGAGACATATCCTCATGATCGCATCCCCGTCCTTTTGATGTTTTG
TTTCCTGTGTCTATTTTTCTCGCTCTCGCTTACTTTTGGTTCGCTTGTGT
CTTGTGTCCTTTGTTTTGTTCCACGCGGGGTTGGAGTCCAGGGTCCTGTG
GCTATTTTGGCTTGCTTGCTGCTCGCCGCGCCTTGTGGTTCTGGAAAGCC
AACCATTGTCTCTGTTGTTATGTCCTGGTCTTTTCCGACATCATCTGGCA
ATGTAGCCCCCACCCTTGACTTAAAACTGGACAAGCCGCGAGTAATTCCA
TCCGGCCACCCTGGCCCATGGGGATGA
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Synonyms
Publications