jgi.p|Nanoce1779_2|532233, mRNA_8301 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532233
Unique Name	mRNA_8301
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1494
Alignment location	scaffold_23:307016..308632 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	532319
Track	FilteredModels2
ProteinId	532233

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:307016..308632 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532233	gene_8301	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532233	mRNA_8301-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8301	CDS_8301	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:307016..308632+
coding sequence from alignment at scaffold_23:307016..308632+

mRNA sequence

>mRNA_8301 ID=mRNA_8301|Name=jgi.p|Nanoce1779_2|532233|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
ATGTTGAATGCTTCGAATGTCACGTCTCTTTTTTGGCCCGCCTTCCTCCG
TGCGTGGATCCTGACACACCATCAACAGCAACAACAAAAACAGCAGCAGC
AGCAGCAGCAGCAGCAACAACAACAACAACAACAGCCACAACGAAAAATA
CTCTCCTCCATTCCATCCTCCTCCTCCATCACAACCATCCCTCCCTCCGT
CCCTCCCTCCCTCCTTTGGTACGTCCATGGGAGGGCCTACGACCTCGAAG
CTTTCCTCCACCTCCATCCAGGTGGAGCTCACGCTTTAAGCCTGGGACAA
GGGAGGGATTGCACGGCATTGTTCGAGAGCTACCATCCCTTTACCCGAAA
GCATAAACTGGTGCTGGGGAAATACCGGGTGGAGGTGGAGGAAGAGGTGC
TTGACCAGTATTGCGAGAAAGAGGAGGGGAAGGAGGAGGAGGAGGAAGAA
GAAGAAGAAGATTTGTTTTACGAGGTTTTAAAGGAGAGGGTAAAGACAGT
GATGGCGGGGGTGGACGTAGTGGCGTCGTGGAAGCGGCGTTTCTACTACT
GCCTCACCCTCCTCGTCGTCCTCCTTTCATACCGTGGCTTCCTCTCGGGG
AGTGTCCCTGCCCTCCTCATCTTCTCTCTCTCCTCTTGGCTCCTGGGCGC
CATGGGACACGACGGCTCCCACTTCGCCTGCTCCCACCTTCCCTGGGTGA
ACCGGCTGTGCGGTCTGGGCATCTCCCTCATCGCCTCCCCCTTCCTCTGG
TATCACCAGCACACGTTCGCGCACCACTCCTTCACAAATAACTTCGACCA
CGACCCGGACCTCCACCATTTCGTCCTAACGCGCCCTCACGCCAGACAGG
CCAAGATCGAGAAGTTGCACTTCTGGCAGCAATTCCGCCTTTATGTCCTC
CTGCAGTACTCGCTGGTGGCCTTCGGGGAGTGCGTGTGGATCCCGCTCAA
ATTGCTATGCTTCAGGACGCTGCACGGCGTCATGTCCTTTCCCAACCTGG
GGTGGAGGGGGGCGGGGAGGGCGGTGACGCACTTCCTGTTGTACGTGCTG
TTGGTGTTTTGGGTGCCGGGCTGTAAGCTGGGGAGGGAGGGAGGGAGCAA
GTGGTGGATGTTCCCCGTGGTGTACGTCTCGATATGTGGGATGTTGTTCG
GGATATTTTCGCAGATCAACCACCTAAATGAAAAGAGTATCGCCAGTAGG
CAGGGAGAGAGTTTTCGTCCAGTTTCTAACATGGGAGGGAGGTCGTGGGC
GAAGGAGCAGGTGGAGACAAGCAGTAACTTCGCGACTCATTCGTGGGTGT
GGTTTGTGTTGTCAAACGGGTTAAACTATCAAATTGAGCATCATTTGTTT
CCCGGGATTAACCACGAGCATTTGTGGAGGGTCCAGCCGGTGGTTAAAGC
GGCCTGCGAGGAGTTTGGGGTAAACTACAAGAGCTACAATAGTATGAGTG
AGATAGCGTGGGAGACCGCCAAGTACTACAGGTCTCTGGCCTAG

protein sequence of jgi.p|Nanoce1779_2|532233

>mRNA_8301-protein ID=mRNA_8301-protein|Name=jgi.p|Nanoce1779_2|532233|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MLNASNVTSLFWPAFLRAWILTHHQQQQQKQQQQQQQQQQQQQQQPQRKI
LSSIPSSSSITTIPPSVPPSLLWYVHGRAYDLEAFLHLHPGGAHALSLGQ
GRDCTALFESYHPFTRKHKLVLGKYRVEVEEEVLDQYCEKEEGKEEEEEE
EEEDLFYEVLKERVKTVMAGVDVVASWKRRFYYCLTLLVVLLSYRGFLSG
SVPALLIFSLSSWLLGAMGHDGSHFACSHLPWVNRLCGLGISLIASPFLW
YHQHTFAHHSFTNNFDHDPDLHHFVLTRPHARQAKIEKLHFWQQFRLYVL
LQYSLVAFGECVWIPLKLLCFRTLHGVMSFPNLGWRGAGRAVTHFLLYVL
LVFWVPGCKLGREGGSKWWMFPVVYVSICGMLFGIFSQINHLNEKSIASR
QGESFRPVSNMGGRSWAKEQVETSSNFATHSWVWFVLSNGLNYQIEHHLF
PGINHEHLWRVQPVVKAACEEFGVNYKSYNSMSEIAWETAKYYRSLA*

mRNA from alignment at scaffold_23:307016..308632+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8301 ID=mRNA_8301|Name=jgi.p|Nanoce1779_2|532233|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp|location=Sequence derived from alignment at scaffold_23:307016..308632+ (Nannochloropsis oceanica)
ATGTTGAATGCTTCGAATGTCACGTCTCTTTTTTGGCCCGCCTTCCTCCG
TGCGTGGATCCTGACACACCATCAACAGCAACAACAAAAACAGCAGCAGC
AGCAGCAGCAGCAGCAACAACAACAACAACAACAGCCACAACGAAAAATA
CTCTCCTCCATTCCATCCTCCTCCTCCATCACAACCATCCCTCCCTCCGT
CCCTCCCTCCCTCCTTTGGTACGTCCATGGGAGGGCCTACGACCTCGAAG
CTTTCCTCCACCTCCATCCAGGTGGAGCTCACGCTTTAAGCCTGGGACAA
GGGAGGGATTGCACGGCATTGTTCGAGAGCTACCATCCCTTTACCCGAAA
GCATAAACTGGTGCTGGGGAAATACCGGGTGGAGGTGGAGGAAGAGGTGC
TTGACCAGTATTGCGTGGCCAGGAAGGAGGGAGGGAAAGGGGGGGGGGGC
TCGAGGAAGGAAGGAGTGGGAGAAGGAGTGAAAAAGGAGAAAGAGGAGGG
GAAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGATTTGTTTTACGAGGTTT
TAAAGGAGAGGGTAAAGACAGTGATGGCGGGGGTGGACGTAGTGGCGTCG
TGGAAGCGGCGTTTCTACTACTGCCTCACCCTCCTCGTCGTCCTCCTTTC
ATACCGTGGCTTCCTCTCGGGGAGTGTCCCTGCCCTCCTCATCTTCTCTC
TCTCCTCTTGGCTCCTGGGCGCCATGGGACACGACGGCTCCCACTTCGCC
TGCTCCCACCTTCCCTGGGTGAACCGGCTGTGCGGTCTGGGCATCTCCCT
CATCGCCTCCCCCTTCCTCTGGTATCACCAGCACACGTTCGCGCACCACT
CCTTCACAAATAACTTCGACCACGACCCGGACCTCCACCATTTCGTCCTA
ACGCGCCCTCACGCCAGACAGGCCAAGATCGAGAAGTTGCACTTCTGGCA
GCAATTCCGCCTTTATGTCCTCCTGCAGTACTCGCTGGTGGCCTTCGGGG
AGTGCGTGTGGATCCCGCTCAAATTGCTATGCTTCAGGACGCTGCACGGC
GTCATGTCCTTTCCCAACCTGGGGTGGAGGGGGGCGGGGAGGGCGGTGAC
GCACTTCCTGTTGTACGTGCTGTTGGTGTTTTGGGTGCCGGGCTGTAAGC
TGGGGAGGGAGGGAGGGAGCAAGTGGTGGATGTTCCCCGTGGTGTACGTC
TCGATATGTGGGATGTTGTTCGGGATATTTTCGCAGATCAACCACCTAAA
TGAAAAGAGTATCGCCAGTGCCGGGGGGGGAGGGGGGGAGGCAATGAAGG
AGTACGGGAAGGAGGGAGGTAGGCAGGGAGAGAGTTTTCGTCCAGTTTCT
AACATGGGAGGGAGGTCGTGGGCGAAGGAGCAGGTGGAGACAAGCAGTAA
CTTCGCGACTCATTCGTGGGTGTGGTTTGTGTTGTCAAACGGGTTAAACT
ATCAAATTGAGCATCATTTGTTTCCCGGGATTAACCACGAGCATTTGTGG
AGGGTCCAGCCGGTGGTTAAAGCGGCCTGCGAGGAGTTTGGGGTAAACTA
CAAGAGCTACAATAGTATGAGTGAGATAGCGTGGGAGACCGCCAAGTACT
ACAGGTCTCTGGCCTAG

Coding sequence (CDS) from alignment at scaffold_23:307016..308632+

>mRNA_8301 ID=mRNA_8301|Name=jgi.p|Nanoce1779_2|532233|organism=Nannochloropsis oceanica|type=CDS|length=4482bp|location=Sequence derived from alignment at scaffold_23:307016..308632+ (Nannochloropsis oceanica)
ATGTTGAATGCTTCGAATGTCACGTCTCTTTTTTGGCCCGCCTTCCTCCG
TGCGTGGATCCTGACACACCATCAACAGCAACAACAAAAACAGCAGCAGC
AGCAGCAGCAGCAGCAACAACAACAACAACAACAGCCACAACGAAAAATA
CTCTCCTCCATTCCATCCTCCTCCTCCATCACAACCATCCCTCCCTCCGT
CCCTCCCTCCCTCCTTTGGTACGTCCATGGGAGGGCCTACGACCTCGAAG
CTTTCCTCCACCTCCATCCAGGTGGAGCTCACGCTTTAAGCCTGGGACAA
GGGAGGGATTGCACGGCATTGTTCGAGAGCTACCATCCCTTTACCCGAAA
GCATAAACTGGTGCTGGGGAAATACCGGGTGGAGGTGGAGGAAGAGGTGC
TTGACCAGTATTGCGAGAAAGAGGAGGGGAAGGAGGAGGAGGAGGAAGAA
GAAGAAGAAGATTTGTTTTACGAGGTTTTAAAGGAGAGGGTAAAGACAGT
GATGGCGGGGGTGGACGTAGTGGCGTCGTGGAAGCGGCGTTTCTACTACT
GCCTCACCCTCCTCGTCGTCCTCCTTTCATACCGTGGCTTCCTCTCGGGG
AGTGTCCCTGCCCTCCTCATCTTCTCTCTCTCCTCTTGGCTCCTGGGCGC
CATGGGACACGACGGCTCCCACTTCGCCTGCTCCCACCTTCCCTGGGTGA
ACCGGCTGTGCGGTCTGGGCATCTCCCTCATCGCCTCCCCCTTCCTCTGG
TATCACCAGCACACGTTCGCGCACCACTCCTTCACAAATAACTTCGACCA
CGACCCGGACCTCCACCATTTCGTCCTAACGCGCCCTCACGCCAGACAGG
CCAAGATCGAGAAGTTGCACTTCTGGCAGCAATTCCGCCTTTATGTCCTC
CTGCAGTACTCGCTGGTGGCCTTCGGGGAGTGCGTGTGGATCCCGCTCAA
ATTGCTATGCTTCAGGACGCTGCACGGCGTCATGTCCTTTCCCAACCTGG
GGTGGAGGGGGGCGGGGAGGGCGGTGACGCACTTCCTGTTGTACGTGCTG
TTGGTGTTTTGGGTGCCGGGCTGTAAGCTGGGGAGGGAGGGAGGGAGCAA
GTGGTGGATGTTCCCCGTGGTGTACGTCTCGATATGTGGGATGTTGTTCG
GGATATTTTCGCAGATCAACCACCTAAATGAAAAGAGTATCGCCAGTAGG
CAGGGAGAGAGTTTTCGTCCAGTTTCTAACATGGGAGGGAGGTCGTGGGC
GAAGGAGCAGGTGGAGACAAGCAGTAACTTCGCGACTCATTCGTGGGTGT
GGTTTGTGTTGTCAAACGGGTTAAACTATCAAATTGAGCATCATTTGTTT
CCCGGGATTAACCACGAGCATTTGTGGAGGGTCCAGCCGGTGGTTAAAGC
GGCCTGCGAGGAGTTTGGGGTAAACTACAAGAGCTACAATAGTATGAGTG
AGATAGCGTGGGAGACCGCCAAGTACTACAGGTCTCTGGCCTAGATGTTG
AATGCTTCGAATGTCACGTCTCTTTTTTGGCCCGCCTTCCTCCGTGCGTG
GATCCTGACACACCATCAACAGCAACAACAAAAACAGCAGCAGCAGCAGC
AGCAGCAGCAACAACAACAACAACAACAGCCACAACGAAAAATACTCTCC
TCCATTCCATCCTCCTCCTCCATCACAACCATCCCTCCCTCCGTCCCTCC
CTCCCTCCTTTGGTACGTCCATGGGAGGGCCTACGACCTCGAAGCTTTCC
TCCACCTCCATCCAGGTGGAGCTCACGCTTTAAGCCTGGGACAAGGGAGG
GATTGCACGGCATTGTTCGAGAGCTACCATCCCTTTACCCGAAAGCATAA
ACTGGTGCTGGGGAAATACCGGGTGGAGGTGGAGGAAGAGGTGCTTGACC
AGTATTGCGAGAAAGAGGAGGGGAAGGAGGAGGAGGAGGAAGAAGAAGAA
GAAGATTTGTTTTACGAGGTTTTAAAGGAGAGGGTAAAGACAGTGATGGC
GGGGGTGGACGTAGTGGCGTCGTGGAAGCGGCGTTTCTACTACTGCCTCA
CCCTCCTCGTCGTCCTCCTTTCATACCGTGGCTTCCTCTCGGGGAGTGTC
CCTGCCCTCCTCATCTTCTCTCTCTCCTCTTGGCTCCTGGGCGCCATGGG
ACACGACGGCTCCCACTTCGCCTGCTCCCACCTTCCCTGGGTGAACCGGC
TGTGCGGTCTGGGCATCTCCCTCATCGCCTCCCCCTTCCTCTGGTATCAC
CAGCACACGTTCGCGCACCACTCCTTCACAAATAACTTCGACCACGACCC
GGACCTCCACCATTTCGTCCTAACGCGCCCTCACGCCAGACAGGCCAAGA
TCGAGAAGTTGCACTTCTGGCAGCAATTCCGCCTTTATGTCCTCCTGCAG
TACTCGCTGGTGGCCTTCGGGGAGTGCGTGTGGATCCCGCTCAAATTGCT
ATGCTTCAGGACGCTGCACGGCGTCATGTCCTTTCCCAACCTGGGGTGGA
GGGGGGCGGGGAGGGCGGTGACGCACTTCCTGTTGTACGTGCTGTTGGTG
TTTTGGGTGCCGGGCTGTAAGCTGGGGAGGGAGGGAGGGAGCAAGTGGTG
GATGTTCCCCGTGGTGTACGTCTCGATATGTGGGATGTTGTTCGGGATAT
TTTCGCAGATCAACCACCTAAATGAAAAGAGTATCGCCAGTAGGCAGGGA
GAGAGTTTTCGTCCAGTTTCTAACATGGGAGGGAGGTCGTGGGCGAAGGA
GCAGGTGGAGACAAGCAGTAACTTCGCGACTCATTCGTGGGTGTGGTTTG
TGTTGTCAAACGGGTTAAACTATCAAATTGAGCATCATTTGTTTCCCGGG
ATTAACCACGAGCATTTGTGGAGGGTCCAGCCGGTGGTTAAAGCGGCCTG
CGAGGAGTTTGGGGTAAACTACAAGAGCTACAATAGTATGAGTGAGATAG
CGTGGGAGACCGCCAAGTACTACAGGTCTCTGGCCTAGATGTTGAATGCT
TCGAATGTCACGTCTCTTTTTTGGCCCGCCTTCCTCCGTGCGTGGATCCT
GACACACCATCAACAGCAACAACAAAAACAGCAGCAGCAGCAGCAGCAGC
AGCAACAACAACAACAACAACAGCCACAACGAAAAATACTCTCCTCCATT
CCATCCTCCTCCTCCATCACAACCATCCCTCCCTCCGTCCCTCCCTCCCT
CCTTTGGTACGTCCATGGGAGGGCCTACGACCTCGAAGCTTTCCTCCACC
TCCATCCAGGTGGAGCTCACGCTTTAAGCCTGGGACAAGGGAGGGATTGC
ACGGCATTGTTCGAGAGCTACCATCCCTTTACCCGAAAGCATAAACTGGT
GCTGGGGAAATACCGGGTGGAGGTGGAGGAAGAGGTGCTTGACCAGTATT
GCGAGAAAGAGGAGGGGAAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAT
TTGTTTTACGAGGTTTTAAAGGAGAGGGTAAAGACAGTGATGGCGGGGGT
GGACGTAGTGGCGTCGTGGAAGCGGCGTTTCTACTACTGCCTCACCCTCC
TCGTCGTCCTCCTTTCATACCGTGGCTTCCTCTCGGGGAGTGTCCCTGCC
CTCCTCATCTTCTCTCTCTCCTCTTGGCTCCTGGGCGCCATGGGACACGA
CGGCTCCCACTTCGCCTGCTCCCACCTTCCCTGGGTGAACCGGCTGTGCG
GTCTGGGCATCTCCCTCATCGCCTCCCCCTTCCTCTGGTATCACCAGCAC
ACGTTCGCGCACCACTCCTTCACAAATAACTTCGACCACGACCCGGACCT
CCACCATTTCGTCCTAACGCGCCCTCACGCCAGACAGGCCAAGATCGAGA
AGTTGCACTTCTGGCAGCAATTCCGCCTTTATGTCCTCCTGCAGTACTCG
CTGGTGGCCTTCGGGGAGTGCGTGTGGATCCCGCTCAAATTGCTATGCTT
CAGGACGCTGCACGGCGTCATGTCCTTTCCCAACCTGGGGTGGAGGGGGG
CGGGGAGGGCGGTGACGCACTTCCTGTTGTACGTGCTGTTGGTGTTTTGG
GTGCCGGGCTGTAAGCTGGGGAGGGAGGGAGGGAGCAAGTGGTGGATGTT
CCCCGTGGTGTACGTCTCGATATGTGGGATGTTGTTCGGGATATTTTCGC
AGATCAACCACCTAAATGAAAAGAGTATCGCCAGTAGGCAGGGAGAGAGT
TTTCGTCCAGTTTCTAACATGGGAGGGAGGTCGTGGGCGAAGGAGCAGGT
GGAGACAAGCAGTAACTTCGCGACTCATTCGTGGGTGTGGTTTGTGTTGT
CAAACGGGTTAAACTATCAAATTGAGCATCATTTGTTTCCCGGGATTAAC
CACGAGCATTTGTGGAGGGTCCAGCCGGTGGTTAAAGCGGCCTGCGAGGA
GTTTGGGGTAAACTACAAGAGCTACAATAGTATGAGTGAGATAGCGTGGG
AGACCGCCAAGTACTACAGGTCTCTGGCCTAG

Synonyms

Publications