jgi.p|Nanoce1779_2|189419, mRNA_8299 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|189419
Unique Name	mRNA_8299
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2618
Alignment location	scaffold_23:302648..305507 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	189505
Track	FilteredModels2
ProteinId	189419

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:302648..305507 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|189419	gene_8299	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|189419	mRNA_8299-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8299	CDS_8299	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:302648..305507+
coding sequence from alignment at scaffold_23:302648..305507+

mRNA sequence

>mRNA_8299 ID=mRNA_8299|Name=jgi.p|Nanoce1779_2|189419|organism=Nannochloropsis oceanica|type=mRNA|length=2618bp
GGAGGGAGAGAGATAGGGGGGATTGTGCGTCGAAAGATATATATATGTGG
AGACAAACAAGTAGGGGAGAAGAAACGGTAGTTTTCGAGAGTATGGCATG
AACAGTAGGTAAGTAAAGGAAGAATCAGGTATAGAAGGGATTATGACATC
ACCTTTTGCTTGCTTAATTATTATGCTGAGTACTGGATATTTTGAGTGGG
AGGGGCAGGAGGTGGTGTGGTTATGGAAGGAATGGGCCGAGCTACAGAGG
TGGTATTAGAGGGGTGTTTCGAGTTTGTACACAAGAAAACAAGAAGGAAT
CTCACATACAAAAAAAAGATGAGAGGAAAACTCTAATTATGTAGCGACTG
CTGGGTCCTGTGGCTGTAAGATTGCCCTGTAAAAGCCACAGAAAAAAAAC
AACTTTGGTGGTAATGCATTAAACCGCGGTACTTTCCAAAGAATGCGTAA
CCTCTCCTCCTGACCTGCCGTCCGCTAGCCTCGGCCTCCTACCCATCCAA
AGCAAGCGAGCAGATACTACTTCCCATACTGCCACTCCACTTTACATCTA
CCCGTAAATCACCATGTCCGTCATCAAACAAGGCGAGGACATGAGCCTCA
ATGAACGCGCCTTCATACTCACCGCCTTAAAGGATTCCGAATTCAGAGCT
GACGGCCGCACGCCCCTCGACACTCGCCCCCTTCGAGTCACCTATGCACG
AGCTGAGGGTCAAGCCAGCGCCGAGATTCAATTAGGCAAGACAAGGGTTC
TGACGGTCGTGACTAGCGAGCTGACCCCTCCTTATCCTGACAGACCAACT
GAAGGTTTTTTGAACTTAAATATTGAGTATTCACCTATGGCGACATTGGG
GATTGATAACGCCAGGAGTAATCCTACGTTAGTAGAGGTCGATCGTGTTA
TTGAGAGATGTTTGAGGCAAAGTAGGGCGTTGGACACGGAGGCTTTGTGT
GTGATTGCTGGGAACAAGGTTTGGAGTTTGAGGTGTGATGTGAGGATCTT
GGATGATTGTGGGAATGTGGTCGATGCTGCCTGTCTAGCCACTGTTGCCG
CCCTCCTCCACTTCCGCCTGCCTGAAGTGACTGTCTTAACTGGTGACAGT
ATCAACAGCATTAGTAGTAGTAGCAGCAGCAGCAAAGGCGAAACAGGCAT
GGCCAGTGCTAGCGTGATCGTGCATCATTCTTTTGAGAAGGAGCCGTCGG
CCCTACCTATCCATCATGTCCCCATTTGCGTGACCTTCGGTTTGTTCTCT
GACTCTCCGGTGCTAGCCGCAGTAGACCCTACCCATCGCGAAGAAGCCGT
CATGGGTGGTAGGCTCACCTATTGCATAAATGTACACAAGGAATTGTGTG
CCTTGCAGAAAATTGGGGGGTTGCCACTTCCGCCCTCCAGCCTAGTGGAG
TGGGCGGAGGTCGCGTCGGAGAAGGTGAGTGAGTGGCATGCGCTGTTGCA
AAACTCGCTGGAGGCAGCAGACAGACAGGCGAAGGAGGAGAGATTGAAGT
TTGTAAGGGGGACGGCGTCCGTGGACGTATTACCTGCAAGAGCAGAGGCG
GAAATCGTAGCGGGAGGAGGAGGAGAGGGAGGAAGAGGAGGAGGGGAAGG
AGGGCCGATGCCTGCGGGGATTGATCATTTGGCTTTTGCGGAGTTGCACG
TGCCAATCAAAGTGCGGGAGGGGTCAGAGAAGCCACCTGTGAACGTGGAG
GAAGAGACAAGAAGTTTGTCTCTGTTGGAGCAGGCGGCGATGGAAGCGGA
GAGGTATAGGAAGGAGCAGGAGGAAGAGAAGGCGGGAGAGAAAGTAGCTG
CAGCGGCAGTAGCAGCAGCAGCAGCAACAGCAGCAGAAGGAGGTGCGGCG
ACAGTAGCGGCAGATAACAGAGGAATGGACGTGGACGTTGAAGAGGATGG
AGTGGTGGGTGAAAAGAAGGAAGGAGGATTCAAGTCTAGTAGCCCGTTAG
GCAAGGCTGGGCAGGGTGGGGAACGAGGAGACACTGTAGCGTCAAGAGGA
GCAGCCGAGAGGAAGATGAGGAAGCAAGGGGGAAAGAAGAAAGAGGATAG
TGACGGTGAAGACGAGGAGGAGGAGGAGGAGACGGCCGTGGTGATGATGT
CTGAATTTGCAGAGGGAGACGACGACTCTGCAGCGGGAAAAGGAGTAGGA
GTAGGAGTAGGAGCAGCATCTCCAGGACAAGCAGCGGCATCTAAAGGCAG
TGCATCCCTCGCTAGCCGACGAGCCAAGGTGACGCTCGAAGATATGGAGA
ATGAGGAGGACGAGGATGACGGGGTAGGGGATGACTTGCGGGCGGCTGTC
AAGAAGCCCCGCATGAACAGAGGTGGTGAGAAGGCCCGTGGTGCAATCAG
CAAGGGCAAGGGCAAACAAGGAGGGAAGAGGTGAAGCCGATGACTTCGAA
AGTACTGAGGATAAGAAGACATAACAGCTGAATGGAAATTTCTTGCCCTC
CTCGTTACTCTTTCCTCTCCTTCCCGTCTTGGGATTACTCATTAGAAATC
GAGAACCATGTATGTCGACATGAACGTGCGTGCCTCATCACCGAAGCAAG
ACCGTATCACTAGCACTCGATTTGGGCATCCTTTAATGTGCCATACAGTC
ACTTATGAATGCAATTTT

protein sequence of jgi.p|Nanoce1779_2|189419

>mRNA_8299-protein ID=mRNA_8299-protein|Name=jgi.p|Nanoce1779_2|189419|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp
MSVIKQGEDMSLNERAFILTALKDSEFRADGRTPLDTRPLRVTYARAEGQ
ASAEIQLGKTRVLTVVTSELTPPYPDRPTEGFLNLNIEYSPMATLGIDNA
RSNPTLVEVDRVIERCLRQSRALDTEALCVIAGNKVWSLRCDVRILDDCG
NVVDAACLATVAALLHFRLPEVTVLTGDSINSISSSSSSSKGETGMASAS
VIVHHSFEKEPSALPIHHVPICVTFGLFSDSPVLAAVDPTHREEAVMGGR
LTYCINVHKELCALQKIGGLPLPPSSLVEWAEVASEKVSEWHALLQNSLE
AADRQAKEERLKFVRGTASVDVLPARAEAEIVAGGGGEGGRGGGEGGPMP
AGIDHLAFAELHVPIKVREGSEKPPVNVEEETRSLSLLEQAAMEAERYRK
EQEEEKAGEKVAAAAVAAAAATAAEGGAATVAADNRGMDVDVEEDGVVGE
KKEGGFKSSSPLGKAGQGGERGDTVASRGAAERKMRKQGGKKKEDSDGED
EEEEEETAVVMMSEFAEGDDDSAAGKGVGVGVGAASPGQAAASKGSASLA
SRRAKVTLEDMENEEDEDDGVGDDLRAAVKKPRMNRGGEKARGAISKGKG
KQGGKR*

mRNA from alignment at scaffold_23:302648..305507+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8299 ID=mRNA_8299|Name=jgi.p|Nanoce1779_2|189419|organism=Nannochloropsis oceanica|type=mRNA|length=2860bp|location=Sequence derived from alignment at scaffold_23:302648..305507+ (Nannochloropsis oceanica)
GGAGGGAGAGAGATAGGGGGGATTGTGCGTCGAAAGATATATATATGTGG
AGACAAACAAGTAGGGGAGAAGAAACGGTAGTTTTCGAGAGTATGGCATG
AACAGTAGGTAAGTAAAGGAAGAATCAGGTATAGAAGGGATTATGACATC
ACCTTTTGCTTGCTTAATTATTATGCTGAGTACTGGATATTTTGAGTGGG
AGGGGCAGGAGGTGGTGTGGTTATGGAAGGAATGGGCCGAGCTACAGAGG
TGGTATTAGAGGGGTGTTTCGAGTTTGTACACAAGAAAACAAGAAGGAAT
CTCACATACAAAAAAAAGATGAGAGGAAAACTCTAATTATGTAGCGACTG
CTGGGTCCTGTGGCTGTAAGATTGCCCTGTAAAAGCCACAGAAAAAAAAC
AACTTTGGTGGTAATGCATTAAACCGCGGTACTTTCCAAAGAATGCGGTA
AGAACGATGAGAATAATGTGGCGGACCGTGAGTGTATTTGGCTGCGCATG
ATAAGGCGTTTGGTTTTGGTGCTAACGTTTGCGCGTCGCGTGTTCGTCGT
TGGCGAGTTCACCACCCGTCTTTTCTAAGGCAACATACCCTCTCGGTTGC
CGAGCCCTCCCATTGCACCTCTCGCTCAGCTCGTACCAACACCCAGCCAC
ACTTACTTGCACCTATGTTCACATACACACAAGGACCAGTAACCTCTCCT
CCTGACCTGCCGTCCGCTAGCCTCGGCCTCCTACCCATCCAAAGCAAGCG
AGCAGATACTACTTCCCATACTGCCACTCCACTTTACATCTACCCGTAAA
TCACCATGTCCGTCATCAAACAAGGCGAGGACATGAGCCTCAATGAACGC
GCCTTCATACTCACCGCCTTAAAGGATTCCGAATTCAGAGCTGACGGCCG
CACGCCCCTCGACACTCGCCCCCTTCGAGTCACCTATGCACGAGCTGAGG
GTCAAGCCAGCGCCGAGATTCAATTAGGCAAGACAAGGGTTCTGACGGTC
GTGACTAGCGAGCTGACCCCTCCTTATCCTGACAGACCAACTGAAGGTTT
TTTGAACTTAAATATTGAGTATTCACCTATGGCGACATTGGGGATTGATA
ACGCCAGGAGTAATCCTACGTTAGTAGAGGTCGATCGTGTTATTGAGAGA
TGTTTGAGGCAAAGTAGGGCGTTGGACACGGAGGCTTTGTGTGTGATTGC
TGGGAACAAGGTTTGGAGTTTGAGGTGTGATGTGAGGATCTTGGATGATT
GTGGGAATGTGGTCGATGCTGCCTGTCTAGCCACTGTTGCCGCCCTCCTC
CACTTCCGCCTGCCTGAAGTGACTGTCTTAACTGGTGACAGTATCAACAG
CATTAGTAGTAGTAGCAGCAGCAGCAAAGGCGAAACAGGCATGGCCAGTG
CTAGCGTGATCGTGCATCATTCTTTTGAGAAGGAGCCGTCGGCCCTACCT
ATCCATCATGTCCCCATTTGCGTGACCTTCGGTTTGTTCTCTGACTCTCC
GGTGCTAGCCGCAGTAGACCCTACCCATCGCGAAGAAGCCGTCATGGGTG
GTAGGCTCACCTATTGCATAAATGTACACAAGGAATTGTGTGCCTTGCAG
AAAATTGGGGGGTTGCCACTTCCGCCCTCCAGCCTAGTGGAGTGGGCGGA
GGTCGCGTCGGAGAAGGTGAGTGAGTGGCATGCGCTGTTGCAAAACTCGC
TGGAGGCAGCAGACAGACAGGCGAAGGAGGAGAGATTGAAGTTTGTAAGG
GGGACGGCGTCCGTGGACGTATTACCTGCAAGAGCAGAGGCGGAAATCGT
AGCGGGAGGAGGAGGAGAGGGAGGAAGAGGAGGAGGGGAAGGAGGGCCGA
TGCCTGCGGGGATTGATCATTTGGCTTTTGCGGAGTTGCACGTGCCAATC
AAAGTGCGGGAGGGGTCAGAGAAGCCACCTGTGAACGTGGAGGAAGAGAC
AAGAAGTTTGTCTCTGTTGGAGCAGGCGGCGATGGAAGCGGAGAGGTATA
GGAAGGAGCAGGAGGAAGAGAAGGCGGGAGAGAAAGTAGCTGCAGCGGCA
GTAGCAGCAGCAGCAGCAACAGCAGCAGAAGGAGGTGCGGCGACAGTAGC
GGCAGATAACAGAGGAATGGACGTGGACGTTGAAGAGGATGGAGTGGTGG
GTGAAAAGAAGGAAGGAGGATTCAAGTCTAGTAGCCCGTTAGGCAAGGCT
GGGCAGGGTGGGGAACGAGGAGACACTGTAGCGTCAAGAGGAGCAGCCGA
GAGGAAGATGAGGAAGCAAGGGGGAAAGAAGAAAGAGGATAGTGACGGTG
AAGACGAGGAGGAGGAGGAGGAGACGGCCGTGGTGATGATGTCTGAATTT
GCAGAGGGAGACGACGACTCTGCAGCGGGAAAAGGAGTAGGAGTAGGAGT
AGGAGCAGCATCTCCAGGACAAGCAGCGGCATCTAAAGGCAGTGCATCCC
TCGCTAGCCGACGAGCCAAGGTGACGCTCGAAGATATGGAGAATGAGGAG
GACGAGGATGACGGGGTAGGGGATGACTTGCGGGCGGCTGTCAAGAAGCC
CCGCATGAACAGAGGTGGTGAGAAGGCCCGTGGTGCAATCAGCAAGGGCA
AGGGCAAACAAGGAGGGAAGAGGTGAAGCCGATGACTTCGAAAGTACTGA
GGATAAGAAGACATAACAGCTGAATGGAAATTTCTTGCCCTCCTCGTTAC
TCTTTCCTCTCCTTCCCGTCTTGGGATTACTCATTAGAAATCGAGAACCA
TGTATGTCGACATGAACGTGCGTGCCTCATCACCGAAGCAAGACCGTATC
ACTAGCACTCGATTTGGGCATCCTTTAATGTGCCATACAGTCACTTATGA
ATGCAATTTT

Coding sequence (CDS) from alignment at scaffold_23:302648..305507+

>mRNA_8299 ID=mRNA_8299|Name=jgi.p|Nanoce1779_2|189419|organism=Nannochloropsis oceanica|type=CDS|length=1821bp|location=Sequence derived from alignment at scaffold_23:302648..305507+ (Nannochloropsis oceanica)
ATGTCCGTCATCAAACAAGGCGAGGACATGAGCCTCAATGAACGCGCCTT
CATACTCACCGCCTTAAAGGATTCCGAATTCAGAGCTGACGGCCGCACGC
CCCTCGACACTCGCCCCCTTCGAGTCACCTATGCACGAGCTGAGGGTCAA
GCCAGCGCCGAGATTCAATTAGGCAAGACAAGGGTTCTGACGGTCGTGAC
TAGCGAGCTGACCCCTCCTTATCCTGACAGACCAACTGAAGGTTTTTTGA
ACTTAAATATTGAGTATTCACCTATGGCGACATTGGGGATTGATAACGCC
AGGAGTAATCCTACGTTAGTAGAGGTCGATCGTGTTATTGAGAGATGTTT
GAGGCAAAGTAGGGCGTTGGACACGGAGGCTTTGTGTGTGATTGCTGGGA
ACAAGGTTTGGAGTTTGAGGTGTGATGTGAGGATCTTGGATGATTGTGGG
AATGTGGTCGATGCTGCCTGTCTAGCCACTGTTGCCGCCCTCCTCCACTT
CCGCCTGCCTGAAGTGACTGTCTTAACTGGTGACAGTATCAACAGCATTA
GTAGTAGTAGCAGCAGCAGCAAAGGCGAAACAGGCATGGCCAGTGCTAGC
GTGATCGTGCATCATTCTTTTGAGAAGGAGCCGTCGGCCCTACCTATCCA
TCATGTCCCCATTTGCGTGACCTTCGGTTTGTTCTCTGACTCTCCGGTGC
TAGCCGCAGTAGACCCTACCCATCGCGAAGAAGCCGTCATGGGTGGTAGG
CTCACCTATTGCATAAATGTACACAAGGAATTGTGTGCCTTGCAGAAAAT
TGGGGGGTTGCCACTTCCGCCCTCCAGCCTAGTGGAGTGGGCGGAGGTCG
CGTCGGAGAAGGTGAGTGAGTGGCATGCGCTGTTGCAAAACTCGCTGGAG
GCAGCAGACAGACAGGCGAAGGAGGAGAGATTGAAGTTTGTAAGGGGGAC
GGCGTCCGTGGACGTATTACCTGCAAGAGCAGAGGCGGAAATCGTAGCGG
GAGGAGGAGGAGAGGGAGGAAGAGGAGGAGGGGAAGGAGGGCCGATGCCT
GCGGGGATTGATCATTTGGCTTTTGCGGAGTTGCACGTGCCAATCAAAGT
GCGGGAGGGGTCAGAGAAGCCACCTGTGAACGTGGAGGAAGAGACAAGAA
GTTTGTCTCTGTTGGAGCAGGCGGCGATGGAAGCGGAGAGGTATAGGAAG
GAGCAGGAGGAAGAGAAGGCGGGAGAGAAAGTAGCTGCAGCGGCAGTAGC
AGCAGCAGCAGCAACAGCAGCAGAAGGAGGTGCGGCGACAGTAGCGGCAG
ATAACAGAGGAATGGACGTGGACGTTGAAGAGGATGGAGTGGTGGGTGAA
AAGAAGGAAGGAGGATTCAAGTCTAGTAGCCCGTTAGGCAAGGCTGGGCA
GGGTGGGGAACGAGGAGACACTGTAGCGTCAAGAGGAGCAGCCGAGAGGA
AGATGAGGAAGCAAGGGGGAAAGAAGAAAGAGGATAGTGACGGTGAAGAC
GAGGAGGAGGAGGAGGAGACGGCCGTGGTGATGATGTCTGAATTTGCAGA
GGGAGACGACGACTCTGCAGCGGGAAAAGGAGTAGGAGTAGGAGTAGGAG
CAGCATCTCCAGGACAAGCAGCGGCATCTAAAGGCAGTGCATCCCTCGCT
AGCCGACGAGCCAAGGTGACGCTCGAAGATATGGAGAATGAGGAGGACGA
GGATGACGGGGTAGGGGATGACTTGCGGGCGGCTGTCAAGAAGCCCCGCA
TGAACAGAGGTGGTGAGAAGGCCCGTGGTGCAATCAGCAAGGGCAAGGGC
AAACAAGGAGGGAAGAGGTGA

Synonyms

Publications