jgi.p|Nanoce1779_2|655383, mRNA_8298 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|655383
Unique Name	mRNA_8298
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1222
Alignment location	scaffold_23:301634..302981 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	655469
Track	FilteredModels2
ProteinId	655383

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:301634..302981 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655383	gene_8298	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655383	mRNA_8298-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8298	CDS_8298	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:301634..302981+
coding sequence from alignment at scaffold_23:301634..302981+

mRNA sequence

>mRNA_8298 ID=mRNA_8298|Name=jgi.p|Nanoce1779_2|655383|organism=Nannochloropsis oceanica|type=mRNA|length=1222bp
ATGACCTCTCCCACCACACCCGCCCATGCTCTCGACAACGACGACAACGA
CGAGGCCGCATACACATACATATACTACGAAAAACAAGAATCCTCCCTCT
GTGGGCAACACGCATTGAATGCCTTGCTAATCGGGCCGTATTTTACACCG
GGTGACCTCGCTGAGATTGCCGCGGAGCTGGACGCGAAAGAGAGAGAGTT
GATGCTTGCCGCGGGGGAGACTGAGGAGGCTCTGAAGTTCCTGGCGGAGG
ACAGTGGGAATGTAAACGCCAGCGGCTTCTTCTCGGTGGAAGTGTTGCGT
CTTGCCCTTTCCCGTTTCGGGAGCATTGAGCTTGTTCCTTTCAATGCCAG
AAAGGATGGGGGAACGGAGGGTGAGGAGAAAGAGGATGACCTGACGCAAG
AAGAGGGATTCATCGTGAATAAGGCAGAGCACTGGTTTACATTGAGGAGG
ATAGGGGAGAGATGGTGGAATCTGAATTCAACTTTGGAAGGGGGAAAGCC
GGAGGAGGTGGGAAGGTTCTACTTAAGTGCGTTTATAGGGCAGTTGATGA
TGGACGGATACAGTGTGTTCGTGGTGACCGGGGAGGGCTTGCCTCGAATG
GGAACTCCTGATGATGGTGGTGAGGGAGGAGGAGGAGGATTACGAGGACG
AGGGGGGGGGGAGTGGTTTCGAGTGAGTGAATTGATAAAAGGGAAGGGGA
AGAAGAAAGAAGTCGTTGGAGAAGGAACAGCAAGGGGAAAAGGCGAGAAG
AGGAATTTTTGGTCCACGTTGATGGATGCGGGTCAGACGTTGGCAGGAGG
AGGGGGTGATGGAGGGAGAGGAGGAATGACAGAAGATGAGGAAATGGCGC
GGGCGATTGCCATAAGCTTGAAGGAAAGATAGGGGGAAGGAGGGAGAGAG
ATAGGGGGGATTGTGCGTCGAAAGATATATATATGTGGAGACAAACAAGT
AGGGGAGAAGAAACGGTAGTTTTCGAGAGTATGGCATGAACAGTAGGTAA
GTAAAGGAAGAATCAGGTATAGAAGGGATTATGACATCACCTTTTGCTTG
CTTAATTATTATGCTGAGTACTGGATATTTTGAGTGGGAGGGGCAGGAGG
TGGTGTGGTTATGGAAGGAATGGGCCGAGCTACAGAGGTGGTATTAGAGG
GGTGTTTCGAGTTTGTACACAAGAAAACAAGAAGGAATCTCACATACAAA
AAAAAGATGAGAGGAAAACTCT

protein sequence of jgi.p|Nanoce1779_2|655383

>mRNA_8298-protein ID=mRNA_8298-protein|Name=jgi.p|Nanoce1779_2|655383|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MTSPTTPAHALDNDDNDEAAYTYIYYEKQESSLCGQHALNALLIGPYFTP
GDLAEIAAELDAKERELMLAAGETEEALKFLAEDSGNVNASGFFSVEVLR
LALSRFGSIELVPFNARKDGGTEGEEKEDDLTQEEGFIVNKAEHWFTLRR
IGERWWNLNSTLEGGKPEEVGRFYLSAFIGQLMMDGYSVFVVTGEGLPRM
GTPDDGGEGGGGGLRGRGGGEWFRVSELIKGKGKKKEVVGEGTARGKGEK
RNFWSTLMDAGQTLAGGGGDGGRGGMTEDEEMARAIAISLKER*

mRNA from alignment at scaffold_23:301634..302981+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8298 ID=mRNA_8298|Name=jgi.p|Nanoce1779_2|655383|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp|location=Sequence derived from alignment at scaffold_23:301634..302981+ (Nannochloropsis oceanica)
ATGACCTCTCCCACCACACCCGCCCATGCTCTCGACAACGACGACAACGA
CGAGGCCGCATACACATACATATACTACGAAAAACAAGAATCCTCCCTCT
GTGGGCAACACGCATTGAATGCCTTGCTAATCGGGCCGTATTTTACACCG
GGTGACCTCGCTGAGATTGCCGCGGAGCTGGACGCGAAAGAGAGAGAGTT
GATGCTTGCCGCGGGGGAGACTGAGGAGGCTCTGAAGTTCCTGGCGGAGG
ACAGTGGGAATGTAAACGCCAGGTACATCTAGGTGACTGTATCAAGCTTC
AGTTGCACTCTCCCCTAACATTTTGCCCTCTAGCATTCTTCATCAAACTG
ACTGACTTCTTCTCTCCCTCCCTCTTCTCCTTTTATTACGCAACCCAGCG
GCTTCTTCTCGGTGGAAGTGTTGCGTCTTGCCCTTTCCCGTTTCGGGAGC
ATTGAGCTTGTTCCTTTCAATGCCAGAAAGGATGGGGGAACGGAGGGTGA
GGAGAAAGAGGATGACCTGACGCAAGAAGAGGGATTCATCGTGAATAAGG
CAGAGCACTGGTTTACATTGAGGAGGATAGGGGAGAGATGGTGGAATCTG
AATTCAACTTTGGAAGGGGGAAAGCCGGAGGAGGTGGGAAGGTTCTACTT
AAGTGCGTTTATAGGGCAGTTGATGATGGACGGATACAGTGTGTTCGTGG
TGACCGGGGAGGGCTTGCCTCGAATGGGAACTCCTGATGATGGTGGTGAG
GGAGGAGGAGGAGGATTACGAGGACGAGGGGGGGGGGAGTGGTTTCGAGT
GAGTGAATTGATAAAAGGGAAGGGGAAGAAGAAAGAAGTCGTTGGAGAAG
GAACAGCAAGGGGAAAAGGCGAGAAGAGGAATTTTTGGTCCACGTTGATG
GATGCGGGTCAGACGTTGGCAGGAGGAGGGGGTGATGGAGGGAGAGGAGG
AATGACAGAAGATGAGGAAATGGCGCGGGCGATTGCCATAAGCTTGAAGG
AAAGATAGGGGGAAGGAGGGAGAGAGATAGGGGGGATTGTGCGTCGAAAG
ATATATATATGTGGAGACAAACAAGTAGGGGAGAAGAAACGGTAGTTTTC
GAGAGTATGGCATGAACAGTAGGTAAGTAAAGGAAGAATCAGGTATAGAA
GGGATTATGACATCACCTTTTGCTTGCTTAATTATTATGCTGAGTACTGG
ATATTTTGAGTGGGAGGGGCAGGAGGTGGTGTGGTTATGGAAGGAATGGG
CCGAGCTACAGAGGTGGTATTAGAGGGGTGTTTCGAGTTTGTACACAAGA
AAACAAGAAGGAATCTCACATACAAAAAAAAGATGAGAGGAAAACTCT

Coding sequence (CDS) from alignment at scaffold_23:301634..302981+

>mRNA_8298 ID=mRNA_8298|Name=jgi.p|Nanoce1779_2|655383|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_23:301634..302981+ (Nannochloropsis oceanica)
ATGACCTCTCCCACCACACCCGCCCATGCTCTCGACAACGACGACAACGA
CGAGGCCGCATACACATACATATACTACGAAAAACAAGAATCCTCCCTCT
GTGGGCAACACGCATTGAATGCCTTGCTAATCGGGCCGTATTTTACACCG
GGTGACCTCGCTGAGATTGCCGCGGAGCTGGACGCGAAAGAGAGAGAGTT
GATGCTTGCCGCGGGGGAGACTGAGGAGGCTCTGAAGTTCCTGGCGGAGG
ACAGTGGGAATGTAAACGCCAGCGGCTTCTTCTCGGTGGAAGTGTTGCGT
CTTGCCCTTTCCCGTTTCGGGAGCATTGAGCTTGTTCCTTTCAATGCCAG
AAAGGATGGGGGAACGGAGGGTGAGGAGAAAGAGGATGACCTGACGCAAG
AAGAGGGATTCATCGTGAATAAGGCAGAGCACTGGTTTACATTGAGGAGG
ATAGGGGAGAGATGGTGGAATCTGAATTCAACTTTGGAAGGGGGAAAGCC
GGAGGAGGTGGGAAGGTTCTACTTAAGTGCGTTTATAGGGCAGTTGATGA
TGGACGGATACAGTGTGTTCGTGGTGACCGGGGAGGGCTTGCCTCGAATG
GGAACTCCTGATGATGGTGGTGAGGGAGGAGGAGGAGGATTACGAGGACG
AGGGGGGGGGGAGTGGTTTCGAGTGAGTGAATTGATAAAAGGGAAGGGGA
AGAAGAAAGAAGTCGTTGGAGAAGGAACAGCAAGGGGAAAAGGCGAGAAG
AGGAATTTTTGGTCCACGTTGATGGATGCGGGTCAGACGTTGGCAGGAGG
AGGGGGTGATGGAGGGAGAGGAGGAATGACAGAAGATGAGGAAATGGCGC
GGGCGATTGCCATAAGCTTGAAGGAAAGATAGATGACCTCTCCCACCACA
CCCGCCCATGCTCTCGACAACGACGACAACGACGAGGCCGCATACACATA
CATATACTACGAAAAACAAGAATCCTCCCTCTGTGGGCAACACGCATTGA
ATGCCTTGCTAATCGGGCCGTATTTTACACCGGGTGACCTCGCTGAGATT
GCCGCGGAGCTGGACGCGAAAGAGAGAGAGTTGATGCTTGCCGCGGGGGA
GACTGAGGAGGCTCTGAAGTTCCTGGCGGAGGACAGTGGGAATGTAAACG
CCAGCGGCTTCTTCTCGGTGGAAGTGTTGCGTCTTGCCCTTTCCCGTTTC
GGGAGCATTGAGCTTGTTCCTTTCAATGCCAGAAAGGATGGGGGAACGGA
GGGTGAGGAGAAAGAGGATGACCTGACGCAAGAAGAGGGATTCATCGTGA
ATAAGGCAGAGCACTGGTTTACATTGAGGAGGATAGGGGAGAGATGGTGG
AATCTGAATTCAACTTTGGAAGGGGGAAAGCCGGAGGAGGTGGGAAGGTT
CTACTTAAGTGCGTTTATAGGGCAGTTGATGATGGACGGATACAGTGTGT
TCGTGGTGACCGGGGAGGGCTTGCCTCGAATGGGAACTCCTGATGATGGT
GGTGAGGGAGGAGGAGGAGGATTACGAGGACGAGGGGGGGGGGAGTGGTT
TCGAGTGAGTGAATTGATAAAAGGGAAGGGGAAGAAGAAAGAAGTCGTTG
GAGAAGGAACAGCAAGGGGAAAAGGCGAGAAGAGGAATTTTTGGTCCACG
TTGATGGATGCGGGTCAGACGTTGGCAGGAGGAGGGGGTGATGGAGGGAG
AGGAGGAATGACAGAAGATGAGGAAATGGCGCGGGCGATTGCCATAAGCT
TGAAGGAAAGATAG

Synonyms

Publications