jgi.p|Nanoce1779_2|601477, mRNA_8297 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601477
Unique NamemRNA_8297
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1338
Alignment locationscaffold_23:299569..301238 -

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Properties
Property NameValue
TranscriptId601563
TrackFilteredModels2
ProteinId601477
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:299569..301238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601477gene_8297Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601477mRNA_8297-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8297CDS_8297Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8297 ID=mRNA_8297|Name=jgi.p|Nanoce1779_2|601477|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp
AGCGCACAGGCCACACAAGCAAGAATTATGGCCGCTGCAGCCATTGCCGC
AAAGCAAGCTGTCATTGTCGTGGGCGGTTCGGGAGCCTTGGGCAAAAGCG
TGGTTCAACGCCTCCTTTCGAACAATAATCCATTCAATGTCATCAACATC
GATTACCTACCCAATCCACACGCCACCCACTCCGTCCCCCTGATGTCTGC
GACCGCTACCATGGCCTGGCATGAGGCTGCTGCGCATGCCTTGACAGAAG
TTCGGGCACTGTTGCGTTTGGACAGCGGACCTGCCCTTCAATGTCGGGCA
GTCTTACACGTGGCAGGGGGGTGGTGTGGGGGTGGAATGAGCGATGCGGG
CTTCCTAAAGAGCGTGGATAGGATGTGGAGATTTAATGTGCAAAGTGCGG
CATTGGCAGCGCATATGGCGGAGGTCTTTATGACTCCTTCGATGTTGCCA
CCGACGGTGCCAAATGAAATGAGAAGCAGCGGCAGCAATGGGACAGTAGG
TGGCTTGGTCGTCTTGACAGGAGCAGGGGCTGCGCTTGACCCAAGCACTT
GCACGGGTATGGTGGGTTATGGTTTAAGTAAGAGTGCAACACACTTCATG
GTTAAGACGATGGCGGTGGACCCGGGATTGAGGGAGGGAGGGGTGACGGC
GCTGTCCCTGTTGCCGAGCACGATCGACACGACTGCGAATAGGATGGCCA
TGCCAGACGCGGATTTTGGGGCATGGACGAAGCCGGAGGAGATCGCGGAC
AAGCTGGCGACATGGGTGGAGGATGCGACGCAACGGCCGCCCTCGGGCTC
CTTGGTCAAGGTGGTGACGTCGCAAGGCAAGACTTCGTGGATGCCACTAT
AAGTGTAGGTTGCCGGGGAGGGAAACTGATGAATGGAAATAAATACAGGC
AAAGGGTGTGTTAGAGAAGTGTATAGAAAAGAGATAACTGGGAGCACGGA
CAGAAACGTGTGCGTGCGAGAAGCGACGGGTCATGAAGCAAGGAGGAATA
GACGAGGGTGCGGAAGTAGCAAGGGCTATACACTGGAGGGGCAGAAGCAG
CGTTCCAAAAGGAATCATCCTAATTCGGGGATAATAAGGAAATGACGGCT
GGTGTTGCAGTGTTGTTCGTTGAGAGTGGAGGAGGGGAAGGTAGTGATAG
AATGTGGAGCAGCGCAACGGCCGAGCTTTTCATTCGCGTCGGCGAGAGGA
TGGGTCGAAGGGTAGACTGTTATTGTGTAGAGGAGTAGAGAATGAACCAG
CAGCAGGGTTTTGTGTGTAAGTACAAAGAATCGCACGCCAGCGAGGAAGA
AATAGAGCAATGCATCAATGGGTTTTGAACCACGCCCC
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protein sequence of jgi.p|Nanoce1779_2|601477

>mRNA_8297-protein ID=mRNA_8297-protein|Name=jgi.p|Nanoce1779_2|601477|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MAAAAIAAKQAVIVVGGSGALGKSVVQRLLSNNNPFNVINIDYLPNPHAT
HSVPLMSATATMAWHEAAAHALTEVRALLRLDSGPALQCRAVLHVAGGWC
GGGMSDAGFLKSVDRMWRFNVQSAALAAHMAEVFMTPSMLPPTVPNEMRS
SGSNGTVGGLVVLTGAGAALDPSTCTGMVGYGLSKSATHFMVKTMAVDPG
LREGGVTALSLLPSTIDTTANRMAMPDADFGAWTKPEEIADKLATWVEDA
TQRPPSGSLVKVVTSQGKTSWMPL*
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mRNA from alignment at scaffold_23:299569..301238-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8297 ID=mRNA_8297|Name=jgi.p|Nanoce1779_2|601477|organism=Nannochloropsis oceanica|type=mRNA|length=1670bp|location=Sequence derived from alignment at scaffold_23:299569..301238- (Nannochloropsis oceanica)
AGCGCACAGGCCACACAAGCAAGAATTATGGCCGCTGCAGCCATTGCCGC
AAAGCAAGCTGTCATTGTCGTGGGCGGTTCGGGAGCCTTGGGCAAAAGCG
TGGTTCAACGCCTCCTTTCGAACAATAATCCATTCAATGTCATCAACATC
GATTACCTACCCAATCCACACGCCACCCACTCCGTCCCCCTGATGTCTGC
GACCGCTACCATGGCCTGGCATGAGGCTGCTGCGCATGCCTTGACAGAAG
TTCGGGCACTGTTGCGTTTGGACAGCGGACCTGCCCTTCAATGTCGGGCA
GTCTTACACGTGGCAGGGGGGTGGTGTGGGGGTGGAATGAGCGATGCGGG
CTTCCTAAAGAGCGTGGATAGGATGTGGAGATTTAATGTGCAAAGTGCGG
CATTGGCAGCGCATATGGCGGAGGTCTTTATGACTCCTTCGATGTTGCCA
CCGACGGTGCCAAATGAAATGAGAAGCAGCGGCAGCAATGGGACAGTAGG
TGGCTTGGTCGTCTTGACAGGAGCAGGGGCTGCGCTTGACCCAAGCACTT
GCACGGGTATGGTGGGTTATGGTTTAAGTAAGAGTGCAACACACTTCATG
GTTAAGACGATGGCGGTGGACCCGGGATTGAGGGAGGGAGGGGTGACGGC
GCTGTCCCTGTTGCCGAGCACGATCGACACGACTGCGAATAGGATGGCCA
TGCCAGACGCGGATTTTGGGGCATGGACGAAGGTGAGTCTTTTCCCTTAT
GAAGCATTATGGTTTTTCTTGTGAGCGTTCCCCCTTGGTTGCATTAATCC
GCTTCGAAGACAAGGGAGGGAGGAGCGGAAGGTGTGAGGGTAGAGGAGAA
AGAGGAGAGGAAAGAGATGACTATGGCTCATGATAACCGCAAAAAGATGT
ATGCACCAAACACCAATACAATAACAGCCGGAGGAGATCGCGGACAAGCT
GGCGACATGGGTGGAGGATGCGACGCAACGGCCGCCCTCGGGCTCCTTGG
TCAAGGTAAGCTTTGAAGGTAGGGAATGTGCGTCCCCCTCCCTCTCCATC
CCCCCGTCTCACATGGACAGAACCAGTGAGCTCAAGCGTCTCTAATTGGG
GTCTACGTTTAAATTGTTTTTCTTATTCTTTAAAATCTACAGGTGGTGAC
GTCGCAAGGCAAGACTTCGTGGATGCCACTATAAGTGTAGGTTGCCGGGG
AGGGAAACTGATGAATGGAAATAAATACAGGCAAAGGGTGTGTTAGAGAA
GTGTATAGAAAAGAGATAACTGGGAGCACGGACAGAAACGTGTGCGTGCG
AGAAGCGACGGGTCATGAAGCAAGGAGGAATAGACGAGGGTGCGGAAGTA
GCAAGGGCTATACACTGGAGGGGCAGAAGCAGCGTTCCAAAAGGAATCAT
CCTAATTCGGGGATAATAAGGAAATGACGGCTGGTGTTGCAGTGTTGTTC
GTTGAGAGTGGAGGAGGGGAAGGTAGTGATAGAATGTGGAGCAGCGCAAC
GGCCGAGCTTTTCATTCGCGTCGGCGAGAGGATGGGTCGAAGGGTAGACT
GTTATTGTGTAGAGGAGTAGAGAATGAACCAGCAGCAGGGTTTTGTGTGT
AAGTACAAAGAATCGCACGCCAGCGAGGAAGAAATAGAGCAATGCATCAA
TGGGTTTTGAACCACGCCCC
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Coding sequence (CDS) from alignment at scaffold_23:299569..301238-

>mRNA_8297 ID=mRNA_8297|Name=jgi.p|Nanoce1779_2|601477|organism=Nannochloropsis oceanica|type=CDS|length=2475bp|location=Sequence derived from alignment at scaffold_23:299569..301238- (Nannochloropsis oceanica)
GTGGTGACGTCGCAAGGCAAGACTTCGTGGATGCCACTATAACCGGAGGA
GATCGCGGACAAGCTGGCGACATGGGTGGAGGATGCGACGCAACGGCCGC
CCTCGGGCTCCTTGGTCAAGATGGCCGCTGCAGCCATTGCCGCAAAGCAA
GCTGTCATTGTCGTGGGCGGTTCGGGAGCCTTGGGCAAAAGCGTGGTTCA
ACGCCTCCTTTCGAACAATAATCCATTCAATGTCATCAACATCGATTACC
TACCCAATCCACACGCCACCCACTCCGTCCCCCTGATGTCTGCGACCGCT
ACCATGGCCTGGCATGAGGCTGCTGCGCATGCCTTGACAGAAGTTCGGGC
ACTGTTGCGTTTGGACAGCGGACCTGCCCTTCAATGTCGGGCAGTCTTAC
ACGTGGCAGGGGGGTGGTGTGGGGGTGGAATGAGCGATGCGGGCTTCCTA
AAGAGCGTGGATAGGATGTGGAGATTTAATGTGCAAAGTGCGGCATTGGC
AGCGCATATGGCGGAGGTCTTTATGACTCCTTCGATGTTGCCACCGACGG
TGCCAAATGAAATGAGAAGCAGCGGCAGCAATGGGACAGTAGGTGGCTTG
GTCGTCTTGACAGGAGCAGGGGCTGCGCTTGACCCAAGCACTTGCACGGG
TATGGTGGGTTATGGTTTAAGTAAGAGTGCAACACACTTCATGGTTAAGA
CGATGGCGGTGGACCCGGGATTGAGGGAGGGAGGGGTGACGGCGCTGTCC
CTGTTGCCGAGCACGATCGACACGACTGCGAATAGGATGGCCATGCCAGA
CGCGGATTTTGGGGCATGGACGAAGGTGGTGACGTCGCAAGGCAAGACTT
CGTGGATGCCACTATAACCGGAGGAGATCGCGGACAAGCTGGCGACATGG
GTGGAGGATGCGACGCAACGGCCGCCCTCGGGCTCCTTGGTCAAGATGGC
CGCTGCAGCCATTGCCGCAAAGCAAGCTGTCATTGTCGTGGGCGGTTCGG
GAGCCTTGGGCAAAAGCGTGGTTCAACGCCTCCTTTCGAACAATAATCCA
TTCAATGTCATCAACATCGATTACCTACCCAATCCACACGCCACCCACTC
CGTCCCCCTGATGTCTGCGACCGCTACCATGGCCTGGCATGAGGCTGCTG
CGCATGCCTTGACAGAAGTTCGGGCACTGTTGCGTTTGGACAGCGGACCT
GCCCTTCAATGTCGGGCAGTCTTACACGTGGCAGGGGGGTGGTGTGGGGG
TGGAATGAGCGATGCGGGCTTCCTAAAGAGCGTGGATAGGATGTGGAGAT
TTAATGTGCAAAGTGCGGCATTGGCAGCGCATATGGCGGAGGTCTTTATG
ACTCCTTCGATGTTGCCACCGACGGTGCCAAATGAAATGAGAAGCAGCGG
CAGCAATGGGACAGTAGGTGGCTTGGTCGTCTTGACAGGAGCAGGGGCTG
CGCTTGACCCAAGCACTTGCACGGGTATGGTGGGTTATGGTTTAAGTAAG
AGTGCAACACACTTCATGGTTAAGACGATGGCGGTGGACCCGGGATTGAG
GGAGGGAGGGGTGACGGCGCTGTCCCTGTTGCCGAGCACGATCGACACGA
CTGCGAATAGGATGGCCATGCCAGACGCGGATTTTGGGGCATGGACGAAG
GTGGTGACGTCGCAAGGCAAGACTTCGTGGATGCCACTATAACCGGAGGA
GATCGCGGACAAGCTGGCGACATGGGTGGAGGATGCGACGCAACGGCCGC
CCTCGGGCTCCTTGGTCAAGATGGCCGCTGCAGCCATTGCCGCAAAGCAA
GCTGTCATTGTCGTGGGCGGTTCGGGAGCCTTGGGCAAAAGCGTGGTTCA
ACGCCTCCTTTCGAACAATAATCCATTCAATGTCATCAACATCGATTACC
TACCCAATCCACACGCCACCCACTCCGTCCCCCTGATGTCTGCGACCGCT
ACCATGGCCTGGCATGAGGCTGCTGCGCATGCCTTGACAGAAGTTCGGGC
ACTGTTGCGTTTGGACAGCGGACCTGCCCTTCAATGTCGGGCAGTCTTAC
ACGTGGCAGGGGGGTGGTGTGGGGGTGGAATGAGCGATGCGGGCTTCCTA
AAGAGCGTGGATAGGATGTGGAGATTTAATGTGCAAAGTGCGGCATTGGC
AGCGCATATGGCGGAGGTCTTTATGACTCCTTCGATGTTGCCACCGACGG
TGCCAAATGAAATGAGAAGCAGCGGCAGCAATGGGACAGTAGGTGGCTTG
GTCGTCTTGACAGGAGCAGGGGCTGCGCTTGACCCAAGCACTTGCACGGG
TATGGTGGGTTATGGTTTAAGTAAGAGTGCAACACACTTCATGGTTAAGA
CGATGGCGGTGGACCCGGGATTGAGGGAGGGAGGGGTGACGGCGCTGTCC
CTGTTGCCGAGCACGATCGACACGACTGCGAATAGGATGGCCATGCCAGA
CGCGGATTTTGGGGCATGGACGAAG
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Synonyms
Publications