jgi.p|Nanoce1779_2|601469, mRNA_8295 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601469
Unique Name	mRNA_8295
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1141
Alignment location	scaffold_23:296612..298336 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601555
Track	FilteredModels2
ProteinId	601469

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:296612..298336 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601469	gene_8295	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601469	mRNA_8295-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8295	CDS_8295	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:296612..298336-
coding sequence from alignment at scaffold_23:296612..298336-

mRNA sequence

>mRNA_8295 ID=mRNA_8295|Name=jgi.p|Nanoce1779_2|601469|organism=Nannochloropsis oceanica|type=mRNA|length=1141bp
ACAGGCACACAAGGATCATCACCTCCCTATTCAGCATCTAGCAGCAGCAA
GCAAAAGCAATCTCAAAACGATGGCGGCCAAGAAGAATATCACCACGACC
ACATTCCTGCTTGTCTTGACCCTCTTCTGCTATTGTTTTTCCTATGTGTT
TGGCGCTGCGGCCCCTGTCAACATTGTCGTCACCCTACGCGGCAAGAAGT
ATGACCTGACTGCCAGCAGCGTGCAAGATATCCAGTCTCAAATGGAGGGC
AAAAGCGGGCTCAAGCCTACCCAGCAAGCCATCCTTTTCAAAGGCAAGCA
GCTCTCTTCCACCGAGGAGCTCCTGGCCGCCGGTGTCACGGAGGGAGACA
CCCTCAACATAGTCCCCACCAAAGGTGATGCCCCCCGCGCCCCTCCTCCC
TCCCGTCCTCGCCCTCCCCTTCCTACGGACACGGACCTGTCCGAGTCCGC
CCCAGCTGCTCCTGCTGCCCCTGCTGCTTCTGCTGCTGCGGGCCCGTCTA
CACCTGATGAGCTTCTGTCGATGCTCAATGGCATGCTTGGAAACAGCGGT
CTTGGCGGGCTAGCGGGCGCTGGGTCCCCCGAGGACGCCGCGAAGATGTT
CCAGGGGATGGACATGGGTAAGGTGGCGAAGATGTACCAAGCCTTCATCT
GGAAGCTTGTCCGTTCCCCCATTGTGGCGCGTTACCTTTCTTCTGAAGAG
GACATGGAGATGCTCCGATTGAAGCTGAAGGAGAGCTTCGAGAATGTGTC
GCAGGACCCCAAGGTGGCGGCCCAGATGGCTCCCTTCTTGAACGATGACT
TCAGGGCCATGATGGAGGACACCCAGAAATTCAGAGAGGAAATTCAAAAA
GTGGTGGATTTCTACATGAAGATGCCTGACCCGGACGTGGACGGCTCGGC
TTTCAGTGGCTTGGACATGTCAATGTTCGAAGGGCTGGCCAAGAGCCCCG
ATGAAGACGCGAGTGATGATCTGGATAATCTGGCGGATGATGATGATGAA
GATGGAGGGGAACTTTAGGTTTTCTAGAGAGAGGGAGAGAGGGAGGGTAG
GAGGGGAGAAGAAGGAGGAGCTGGAGGAGCAGGAGTAACCGGAGCAGGAG
GATAATCAAGACAAAGAAACAAAAAAGACATTTGTAAAGAA

protein sequence of jgi.p|Nanoce1779_2|601469

>mRNA_8295-protein ID=mRNA_8295-protein|Name=jgi.p|Nanoce1779_2|601469|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MAAKKNITTTTFLLVLTLFCYCFSYVFGAAAPVNIVVTLRGKKYDLTASS
VQDIQSQMEGKSGLKPTQQAILFKGKQLSSTEELLAAGVTEGDTLNIVPT
KGDAPRAPPPSRPRPPLPTDTDLSESAPAAPAAPAASAAAGPSTPDELLS
MLNGMLGNSGLGGLAGAGSPEDAAKMFQGMDMGKVAKMYQAFIWKLVRSP
IVARYLSSEEDMEMLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMED
TQKFREEIQKVVDFYMKMPDPDVDGSAFSGLDMSMFEGLAKSPDEDASDD
LDNLADDDDEDGGEL*

mRNA from alignment at scaffold_23:296612..298336-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8295 ID=mRNA_8295|Name=jgi.p|Nanoce1779_2|601469|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at scaffold_23:296612..298336- (Nannochloropsis oceanica)
ACAGGCACACAAGGATCATCACCTCCCTATTCAGCATCTAGCAGCAGCAA
GCAAAAGCAATCTCAAAACGATGGCGGCCAAGAAGAATATCACCACGACC
ACATTCCTGCTTGTCTTGACCCTCTTCTGCTATTGTTTTTCCTATGTGTT
TGGCGCTGCGGTACGTTTTCTTCGGGGAGCTGTTCGTCTGTGAAGATAGG
AACCAGGGAAGGGGTCCTCGTCCTGCAGTTGCTGTAGAGATGGGGATGGT
GCTCCTTTATCAGTGACTCGGTGTTCATTTCCTGTTATCTTCATCCTTAT
GTACTGTTCGTTGTTCGTTGTTCTGCTACTTGTAGGGCACGATTCAATCC
GTGTCCATGTGTGTAATCGGAGGCAATGCAAGCGAAGGTGTTGGTCCCAG
TACAATATGAGGCGAAGCATGATTCACTTTGACCTCGCCCTTTCCTCCTT
CTTTCATCACCTTAGGCCCCTGTCAACATTGTCGTCACCCTACGCGGCAA
GAAGTATGACCTGACTGCCAGCAGCGTGCAAGATATCCAGTCTCAAATGG
AGGGCAAAAGCGGGCTCAAGCCTACCCAGCAAGCCATCCTTTTCAAAGGC
AAGCAGCTCTCTTCCACCGAGGAGCTCCTGGCCGCCGGTGTCACGGAGGG
AGACACCCTCAACATAGTCCCCACCAAAGGTGATGCCCCCCGCGCCCCTC
CTCCCTCCCGTCCTCGCCCTCCCCTTCCTACGGACACGGACCTGTCCGAG
TCCGCCCCAGCTGCTCCTGCTGCCCCTGCTGCTTCTGCTGCTGCGGGCCC
GTCTACACCTGATGAGCTTCTGTCGATGCTCAATGGCATGCTTGGAAACA
GCGGTCTTGGTAAGCGATTTCCTCTTTCTCCCCCCTTGCCGCCTCCTTGA
CTAACCTCTTCCTCCTCCCTCCTTTCCCCCTCCCACATCAGGCGGGCTAG
CGGGCGCTGGGTCCCCCGAGGACGCCGCGAAGATGTTCCAGGGGATGGAC
ATGGGTAAGGTGGCGAAGATGTACCAAGCCTTCATCTGGAAGCTTGTCCG
TTCCCCCATTGTGGCGCGTTACCTTTCTTCTGAAGAGGACATGGAGATGC
TCCGATTGAAGCTGAAGGAGAGCTTCGAGAATGTGTCGCAGGACCCCAAG
GTGGCGGCCCAGATGGCTCCCTTCTTGAACGATGACTTCAGGGCCATGAT
GGAGGACACCCAGAAATTCAGAGAGGTAGGGAGGGAGGGAGGAAGGAAGG
GAGAGAGGGAGGAAAGGAGACTCAAAGCAATGAAATACCTGTGTTCCTAT
GACAGAGGCGCACAGGCGCACACACATACGAATACAGGCACACACGTTCT
TCCGACTTTCTGACCCCACATTTTCTCCTTCTCTTCTTTTTCCCTTGCAA
CTTTTTTTCTACTCCCCTACAGGAAATTCAAAAAGTGGTGGATTTCTACA
TGAAGATGCCTGACCCGGACGTGGACGGCTCGGCTTTCAGTGGCTTGGAC
ATGTCAATGTTCGAAGGGCTGGCCAAGAGCCCCGATGAAGACGCGAGTGA
TGATCTGGATAATCTGGCGGATGATGATGATGAAGATGGAGGGGAACTTT
AGGTTTTCTAGAGAGAGGGAGAGAGGGAGGGTAGGAGGGGAGAAGAAGGA
GGAGCTGGAGGAGCAGGAGTAACCGGAGCAGGAGGATAATCAAGACAAAG
AAACAAAAAAGACATTTGTAAAGAA

Coding sequence (CDS) from alignment at scaffold_23:296612..298336-

>mRNA_8295 ID=mRNA_8295|Name=jgi.p|Nanoce1779_2|601469|organism=Nannochloropsis oceanica|type=CDS|length=3792bp|location=Sequence derived from alignment at scaffold_23:296612..298336- (Nannochloropsis oceanica)
GAAATTCAAAAAGTGGTGGATTTCTACATGAAGATGCCTGACCCGGACGT
GGACGGCTCGGCTTTCAGTGGCTTGGACATGTCAATGTTCGAAGGGCTGG
CCAAGAGCCCCGATGAAGACGCGAGTGATGATCTGGATAATCTGGCGGAT
GATGATGATGAAGATGGAGGGGAACTTTAGGCGGGCTAGCGGGCGCTGGG
TCCCCCGAGGACGCCGCGAAGATGTTCCAGGGGATGGACATGGGTAAGGT
GGCGAAGATGTACCAAGCCTTCATCTGGAAGCTTGTCCGTTCCCCCATTG
TGGCGCGTTACCTTTCTTCTGAAGAGGACATGGAGATGCTCCGATTGAAG
CTGAAGGAGAGCTTCGAGAATGTGTCGCAGGACCCCAAGGTGGCGGCCCA
GATGGCTCCCTTCTTGAACGATGACTTCAGGGCCATGATGGAGGACACCC
AGAAATTCAGAGAGGCCCCTGTCAACATTGTCGTCACCCTACGCGGCAAG
AAGTATGACCTGACTGCCAGCAGCGTGCAAGATATCCAGTCTCAAATGGA
GGGCAAAAGCGGGCTCAAGCCTACCCAGCAAGCCATCCTTTTCAAAGGCA
AGCAGCTCTCTTCCACCGAGGAGCTCCTGGCCGCCGGTGTCACGGAGGGA
GACACCCTCAACATAGTCCCCACCAAAGGTGATGCCCCCCGCGCCCCTCC
TCCCTCCCGTCCTCGCCCTCCCCTTCCTACGGACACGGACCTGTCCGAGT
CCGCCCCAGCTGCTCCTGCTGCCCCTGCTGCTTCTGCTGCTGCGGGCCCG
TCTACACCTGATGAGCTTCTGTCGATGCTCAATGGCATGCTTGGAAACAG
CGGTCTTGATGGCGGCCAAGAAGAATATCACCACGACCACATTCCTGCTT
GTCTTGACCCTCTTCTGCTATTGTTTTTCCTATGTGTTTGGCGCTGCGGA
AATTCAAAAAGTGGTGGATTTCTACATGAAGATGCCTGACCCGGACGTGG
ACGGCTCGGCTTTCAGTGGCTTGGACATGTCAATGTTCGAAGGGCTGGCC
AAGAGCCCCGATGAAGACGCGAGTGATGATCTGGATAATCTGGCGGATGA
TGATGATGAAGATGGAGGGGAACTTTAGGCGGGCTAGCGGGCGCTGGGTC
CCCCGAGGACGCCGCGAAGATGTTCCAGGGGATGGACATGGGTAAGGTGG
CGAAGATGTACCAAGCCTTCATCTGGAAGCTTGTCCGTTCCCCCATTGTG
GCGCGTTACCTTTCTTCTGAAGAGGACATGGAGATGCTCCGATTGAAGCT
GAAGGAGAGCTTCGAGAATGTGTCGCAGGACCCCAAGGTGGCGGCCCAGA
TGGCTCCCTTCTTGAACGATGACTTCAGGGCCATGATGGAGGACACCCAG
AAATTCAGAGAGGCCCCTGTCAACATTGTCGTCACCCTACGCGGCAAGAA
GTATGACCTGACTGCCAGCAGCGTGCAAGATATCCAGTCTCAAATGGAGG
GCAAAAGCGGGCTCAAGCCTACCCAGCAAGCCATCCTTTTCAAAGGCAAG
CAGCTCTCTTCCACCGAGGAGCTCCTGGCCGCCGGTGTCACGGAGGGAGA
CACCCTCAACATAGTCCCCACCAAAGGTGATGCCCCCCGCGCCCCTCCTC
CCTCCCGTCCTCGCCCTCCCCTTCCTACGGACACGGACCTGTCCGAGTCC
GCCCCAGCTGCTCCTGCTGCCCCTGCTGCTTCTGCTGCTGCGGGCCCGTC
TACACCTGATGAGCTTCTGTCGATGCTCAATGGCATGCTTGGAAACAGCG
GTCTTGATGGCGGCCAAGAAGAATATCACCACGACCACATTCCTGCTTGT
CTTGACCCTCTTCTGCTATTGTTTTTCCTATGTGTTTGGCGCTGCGGAAA
TTCAAAAAGTGGTGGATTTCTACATGAAGATGCCTGACCCGGACGTGGAC
GGCTCGGCTTTCAGTGGCTTGGACATGTCAATGTTCGAAGGGCTGGCCAA
GAGCCCCGATGAAGACGCGAGTGATGATCTGGATAATCTGGCGGATGATG
ATGATGAAGATGGAGGGGAACTTTAGGCGGGCTAGCGGGCGCTGGGTCCC
CCGAGGACGCCGCGAAGATGTTCCAGGGGATGGACATGGGTAAGGTGGCG
AAGATGTACCAAGCCTTCATCTGGAAGCTTGTCCGTTCCCCCATTGTGGC
GCGTTACCTTTCTTCTGAAGAGGACATGGAGATGCTCCGATTGAAGCTGA
AGGAGAGCTTCGAGAATGTGTCGCAGGACCCCAAGGTGGCGGCCCAGATG
GCTCCCTTCTTGAACGATGACTTCAGGGCCATGATGGAGGACACCCAGAA
ATTCAGAGAGGCCCCTGTCAACATTGTCGTCACCCTACGCGGCAAGAAGT
ATGACCTGACTGCCAGCAGCGTGCAAGATATCCAGTCTCAAATGGAGGGC
AAAAGCGGGCTCAAGCCTACCCAGCAAGCCATCCTTTTCAAAGGCAAGCA
GCTCTCTTCCACCGAGGAGCTCCTGGCCGCCGGTGTCACGGAGGGAGACA
CCCTCAACATAGTCCCCACCAAAGGTGATGCCCCCCGCGCCCCTCCTCCC
TCCCGTCCTCGCCCTCCCCTTCCTACGGACACGGACCTGTCCGAGTCCGC
CCCAGCTGCTCCTGCTGCCCCTGCTGCTTCTGCTGCTGCGGGCCCGTCTA
CACCTGATGAGCTTCTGTCGATGCTCAATGGCATGCTTGGAAACAGCGGT
CTTGATGGCGGCCAAGAAGAATATCACCACGACCACATTCCTGCTTGTCT
TGACCCTCTTCTGCTATTGTTTTTCCTATGTGTTTGGCGCTGCGGAAATT
CAAAAAGTGGTGGATTTCTACATGAAGATGCCTGACCCGGACGTGGACGG
CTCGGCTTTCAGTGGCTTGGACATGTCAATGTTCGAAGGGCTGGCCAAGA
GCCCCGATGAAGACGCGAGTGATGATCTGGATAATCTGGCGGATGATGAT
GATGAAGATGGAGGGGAACTTTAGGCGGGCTAGCGGGCGCTGGGTCCCCC
GAGGACGCCGCGAAGATGTTCCAGGGGATGGACATGGGTAAGGTGGCGAA
GATGTACCAAGCCTTCATCTGGAAGCTTGTCCGTTCCCCCATTGTGGCGC
GTTACCTTTCTTCTGAAGAGGACATGGAGATGCTCCGATTGAAGCTGAAG
GAGAGCTTCGAGAATGTGTCGCAGGACCCCAAGGTGGCGGCCCAGATGGC
TCCCTTCTTGAACGATGACTTCAGGGCCATGATGGAGGACACCCAGAAAT
TCAGAGAGGCCCCTGTCAACATTGTCGTCACCCTACGCGGCAAGAAGTAT
GACCTGACTGCCAGCAGCGTGCAAGATATCCAGTCTCAAATGGAGGGCAA
AAGCGGGCTCAAGCCTACCCAGCAAGCCATCCTTTTCAAAGGCAAGCAGC
TCTCTTCCACCGAGGAGCTCCTGGCCGCCGGTGTCACGGAGGGAGACACC
CTCAACATAGTCCCCACCAAAGGTGATGCCCCCCGCGCCCCTCCTCCCTC
CCGTCCTCGCCCTCCCCTTCCTACGGACACGGACCTGTCCGAGTCCGCCC
CAGCTGCTCCTGCTGCCCCTGCTGCTTCTGCTGCTGCGGGCCCGTCTACA
CCTGATGAGCTTCTGTCGATGCTCAATGGCATGCTTGGAAACAGCGGTCT
TGATGGCGGCCAAGAAGAATATCACCACGACCACATTCCTGCTTGTCTTG
ACCCTCTTCTGCTATTGTTTTTCCTATGTGTTTGGCGCTGCG

Synonyms

Publications