jgi.p|Nanoce1779_2|601451, mRNA_8290 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601451
Unique NamemRNA_8290
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length840
Alignment locationscaffold_23:280031..280870 -

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Properties
Property NameValue
TranscriptId601537
TrackFilteredModels2
ProteinId601451
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:280031..280870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601451gene_8290Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601451mRNA_8290-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8290CDS_8290Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8290 ID=mRNA_8290|Name=jgi.p|Nanoce1779_2|601451|organism=Nannochloropsis oceanica|type=mRNA|length=840bp
GAGGGGAGAGGAGGGGACGAAAGGAGGGTGACATGATGAGCGTCGAAGAT
GTAGAAGAGGAGGAAGAGGAGGAGGAGGAGGTGGTGGAGGAGGAAGAGGG
GGCTTGTGTAGTGAGACAAGAGGAGGTGGAGGTCGCGTGGCGGGCCTTGA
GGAGACTGGGATGGTTGCCGTTGGTCCAGTCTGCCGTTACTCAAGTCATG
AAAGGAGAGACGGAGAGATACATAGAAAGAACGTGTAAAGGTGTGTATGA
TGTGCCCAGACTGGGACAGGTTGGTGCGTGGAAGGACGCAGTGTTGATGC
CGTGGTTGGAGAGATTGATGGAAGGAGGGGAGGAGGGCGGGGAGGAAGGG
TCCAACATGGTAGTCACTCCCTCTTTCAACAGCAAGAGCAAAACTGCTTC
TAGCTCTTCTTTCCAGGAATGGCGGCTTCGACATGCTTTTAGTGTGTACG
AGAGTTTTGCCGGGGTGCGGATGTTGGAGATGTTTGATATTATTCGGGAT
TTTCCGGATTCGTTGCCCGCGGTGTTGGAGCTAAGAGAGGCCTTAGAGGT
GACACAGCAGCATGGGCAGCTGGCGGGGCTGCTGAGGGAGAGCATGCGGA
GTAGGTTGTTGCACAATGGTGCGAATACCATGCAGATCATCGATGTGTAC
ATTGCCACGATCAAGGTGGGCCTCTTTCTTTTTTTCATTTATTAGACACT
TTTGATGGTGTTTGAGTCGGCTTTTTGTTGATCGTGACATAACCTGCCAC
GCGATGGAAAAAACAATTGCTCATCCCTGCACCCTCCATCCCTCATTCCT
CCCTCCCTCCCTCCCTCAGGCCCTCCGCGAGCTGGATCCC
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protein sequence of jgi.p|Nanoce1779_2|601451

>mRNA_8290-protein ID=mRNA_8290-protein|Name=jgi.p|Nanoce1779_2|601451|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MMSVEDVEEEEEEEEEVVEEEEGACVVRQEEVEVAWRALRRLGWLPLVQS
AVTQVMKGETERYIERTCKGVYDVPRLGQVGAWKDAVLMPWLERLMEGGE
EGGEEGSNMVVTPSFNSKSKTASSSSFQEWRLRHAFSVYESFAGVRMLEM
FDIIRDFPDSLPAVLELREALEVTQQHGQLAGLLRESMRSRLLHNGANTM
QIIDVYIATIKVGLFLFFIY*
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mRNA from alignment at scaffold_23:280031..280870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8290 ID=mRNA_8290|Name=jgi.p|Nanoce1779_2|601451|organism=Nannochloropsis oceanica|type=mRNA|length=840bp|location=Sequence derived from alignment at scaffold_23:280031..280870- (Nannochloropsis oceanica)
GAGGGGAGAGGAGGGGACGAAAGGAGGGTGACATGATGAGCGTCGAAGAT
GTAGAAGAGGAGGAAGAGGAGGAGGAGGAGGTGGTGGAGGAGGAAGAGGG
GGCTTGTGTAGTGAGACAAGAGGAGGTGGAGGTCGCGTGGCGGGCCTTGA
GGAGACTGGGATGGTTGCCGTTGGTCCAGTCTGCCGTTACTCAAGTCATG
AAAGGAGAGACGGAGAGATACATAGAAAGAACGTGTAAAGGTGTGTATGA
TGTGCCCAGACTGGGACAGGTTGGTGCGTGGAAGGACGCAGTGTTGATGC
CGTGGTTGGAGAGATTGATGGAAGGAGGGGAGGAGGGCGGGGAGGAAGGG
TCCAACATGGTAGTCACTCCCTCTTTCAACAGCAAGAGCAAAACTGCTTC
TAGCTCTTCTTTCCAGGAATGGCGGCTTCGACATGCTTTTAGTGTGTACG
AGAGTTTTGCCGGGGTGCGGATGTTGGAGATGTTTGATATTATTCGGGAT
TTTCCGGATTCGTTGCCCGCGGTGTTGGAGCTAAGAGAGGCCTTAGAGGT
GACACAGCAGCATGGGCAGCTGGCGGGGCTGCTGAGGGAGAGCATGCGGA
GTAGGTTGTTGCACAATGGTGCGAATACCATGCAGATCATCGATGTGTAC
ATTGCCACGATCAAGGTGGGCCTCTTTCTTTTTTTCATTTATTAGACACT
TTTGATGGTGTTTGAGTCGGCTTTTTGTTGATCGTGACATAACCTGCCAC
GCGATGGAAAAAACAATTGCTCATCCCTGCACCCTCCATCCCTCATTCCT
CCCTCCCTCCCTCCCTCAGGCCCTCCGCGAGCTGGATCCC
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Coding sequence (CDS) from alignment at scaffold_23:280031..280870-

>mRNA_8290 ID=mRNA_8290|Name=jgi.p|Nanoce1779_2|601451|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_23:280031..280870- (Nannochloropsis oceanica)
ATGATGAGCGTCGAAGATGTAGAAGAGGAGGAAGAGGAGGAGGAGGAGGT
GGTGGAGGAGGAAGAGGGGGCTTGTGTAGTGAGACAAGAGGAGGTGGAGG
TCGCGTGGCGGGCCTTGAGGAGACTGGGATGGTTGCCGTTGGTCCAGTCT
GCCGTTACTCAAGTCATGAAAGGAGAGACGGAGAGATACATAGAAAGAAC
GTGTAAAGGTGTGTATGATGTGCCCAGACTGGGACAGGTTGGTGCGTGGA
AGGACGCAGTGTTGATGCCGTGGTTGGAGAGATTGATGGAAGGAGGGGAG
GAGGGCGGGGAGGAAGGGTCCAACATGGTAGTCACTCCCTCTTTCAACAG
CAAGAGCAAAACTGCTTCTAGCTCTTCTTTCCAGGAATGGCGGCTTCGAC
ATGCTTTTAGTGTGTACGAGAGTTTTGCCGGGGTGCGGATGTTGGAGATG
TTTGATATTATTCGGGATTTTCCGGATTCGTTGCCCGCGGTGTTGGAGCT
AAGAGAGGCCTTAGAGGTGACACAGCAGCATGGGCAGCTGGCGGGGCTGC
TGAGGGAGAGCATGCGGAGTAGGTTGTTGCACAATGGTGCGAATACCATG
CAGATCATCGATGTGTACATTGCCACGATCAAGGTGGGCCTCTTTCTTTT
TTTCATTTATTAG
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Synonyms
Publications