jgi.p|Nanoce1779_2|568358, mRNA_8289 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568358
Unique NamemRNA_8289
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1050
Alignment locationscaffold_23:278170..279219 -

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Properties
Property NameValue
TranscriptId568444
TrackFilteredModels2
ProteinId568358
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:278170..279219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568358gene_8289Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8289CDS_8289Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568358mRNA_8289-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8289 ID=mRNA_8289|Name=jgi.p|Nanoce1779_2|568358|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
ATGGCGGCAGCTAAGGCGGAGGAGCAGCGAGCAGCGACGTGCGTAGATGC
CACGATTGTCTCGCACCATTTCTGGCCGCCGCTGCAAGAGGAGGAGTTGG
TCCTTCACCCAACCATGGCGGGGAGAATGACGGACTTCGCCTCTGCATAT
TCCGTGCTGAAGAACCCGAGGAAGTTGGAGTGGAAGCCTCAGCTGGGCTT
AGTCACTTTGGATCTTGAATTTGATTGTTTGGAGGTAGAAAGGGAGGAGG
AGGGAGGGAGAGAGGGAGGGATACAGGAGTGGGACGAGGAGGCGGAGAAG
GTAGTGAAGGCCTGGAGGAAGGAGGAGAGGAGAAAGAAGCGGGTGGTAGC
TCGGTCATTCACCGTAAGTCCCGTGCATGCCACGCTGATCATGCATTTTG
GAAAAGAAGAGGACGACACTGGCAGTGGTTTGGAGGAGGAACGAAGCCAG
ACAGAGCTAGGGCAACTCACGAGCTTACCCTTGGAAGTCGTGGCCCGCAA
AATGACTTTCTGGGTCAACCAAGGTATCGTCTCCCTCTCCTCCACCCCTT
CCCCCATCCCTTCCTTTGCCTCGCCCTCGGCGGCAGCAGCAGTGGAAATG
GCAGGAGGAGGCTTGACGTCGCCGCCCAATTTTTATCTGCAGCAGCAGCA
AACACAACTTCAGCATCAACCACATCGACCAGGGGAAGTCTACTATAAAT
TGATCACGAAGCAAGATCCCGATGGACCAGATGGACAAGGACACGGAGGA
GGACGAGGAGGATCGTTTGAAGATGATGATTTGGAAGCGGCTGTGTCGTC
TGACGCGCAAGAAGCGAAAGAGACTGACGTGTACATTTCATATGTTTTGG
GGATGCTTGGGACGTATGGAGGGAGGTCAGCGAGGGCAATTCATGACACG
TTGAAGATATGGGCAGGGGGGGATCAACAGACTTATAGCTTGCACCTTGG
AGAGGTCGAAAGGATTCTGCAGAGGCTTGTGGGGGAAGAGAAGCTGGAGA
TGGTGGATGGGGTGTACCAGTTGGCGAATCGACCGGCGCACCATCGCTAA
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protein sequence of jgi.p|Nanoce1779_2|568358

>mRNA_8289-protein ID=mRNA_8289-protein|Name=jgi.p|Nanoce1779_2|568358|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MAAAKAEEQRAATCVDATIVSHHFWPPLQEEELVLHPTMAGRMTDFASAY
SVLKNPRKLEWKPQLGLVTLDLEFDCLEVEREEEGGREGGIQEWDEEAEK
VVKAWRKEERRKKRVVARSFTVSPVHATLIMHFGKEEDDTGSGLEEERSQ
TELGQLTSLPLEVVARKMTFWVNQGIVSLSSTPSPIPSFASPSAAAAVEM
AGGGLTSPPNFYLQQQQTQLQHQPHRPGEVYYKLITKQDPDGPDGQGHGG
GRGGSFEDDDLEAAVSSDAQEAKETDVYISYVLGMLGTYGGRSARAIHDT
LKIWAGGDQQTYSLHLGEVERILQRLVGEEKLEMVDGVYQLANRPAHHR*
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mRNA from alignment at scaffold_23:278170..279219-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8289 ID=mRNA_8289|Name=jgi.p|Nanoce1779_2|568358|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp|location=Sequence derived from alignment at scaffold_23:278170..279219- (Nannochloropsis oceanica)
ATGGCGGCAGCTAAGGCGGAGGAGCAGCGAGCAGCGACGTGCGTAGATGC
CACGATTGTCTCGCACCATTTCTGGCCGCCGCTGCAAGAGGAGGAGTTGG
TCCTTCACCCAACCATGGCGGGGAGAATGACGGACTTCGCCTCTGCATAT
TCCGTGCTGAAGAACCCGAGGAAGTTGGAGTGGAAGCCTCAGCTGGGCTT
AGTCACTTTGGATCTTGAATTTGATTGTTTGGAGGTAGAAAGGGAGGAGG
AGGGAGGGAGAGAGGGAGGGATACAGGAGTGGGACGAGGAGGCGGAGAAG
GTAGTGAAGGCCTGGAGGAAGGAGGAGAGGAGAAAGAAGCGGGTGGTAGC
TCGGTCATTCACCGTAAGTCCCGTGCATGCCACGCTGATCATGCATTTTG
GAAAAGAAGAGGACGACACTGGCAGTGGTTTGGAGGAGGAACGAAGCCAG
ACAGAGCTAGGGCAACTCACGAGCTTACCCTTGGAAGTCGTGGCCCGCAA
AATGACTTTCTGGGTCAACCAAGGTATCGTCTCCCTCTCCTCCACCCCTT
CCCCCATCCCTTCCTTTGCCTCGCCCTCGGCGGCAGCAGCAGTGGAAATG
GCAGGAGGAGGCTTGACGTCGCCGCCCAATTTTTATCTGCAGCAGCAGCA
AACACAACTTCAGCATCAACCACATCGACCAGGGGAAGTCTACTATAAAT
TGATCACGAAGCAAGATCCCGATGGACCAGATGGACAAGGACACGGAGGA
GGACGAGGAGGATCGTTTGAAGATGATGATTTGGAAGCGGCTGTGTCGTC
TGACGCGCAAGAAGCGAAAGAGACTGACGTGTACATTTCATATGTTTTGG
GGATGCTTGGGACGTATGGAGGGAGGTCAGCGAGGGCAATTCATGACACG
TTGAAGATATGGGCAGGGGGGGATCAACAGACTTATAGCTTGCACCTTGG
AGAGGTCGAAAGGATTCTGCAGAGGCTTGTGGGGGAAGAGAAGCTGGAGA
TGGTGGATGGGGTGTACCAGTTGGCGAATCGACCGGCGCACCATCGCTAA
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Coding sequence (CDS) from alignment at scaffold_23:278170..279219-

>mRNA_8289 ID=mRNA_8289|Name=jgi.p|Nanoce1779_2|568358|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_23:278170..279219- (Nannochloropsis oceanica)
ATGGCGGCAGCTAAGGCGGAGGAGCAGCGAGCAGCGACGTGCGTAGATGC
CACGATTGTCTCGCACCATTTCTGGCCGCCGCTGCAAGAGGAGGAGTTGG
TCCTTCACCCAACCATGGCGGGGAGAATGACGGACTTCGCCTCTGCATAT
TCCGTGCTGAAGAACCCGAGGAAGTTGGAGTGGAAGCCTCAGCTGGGCTT
AGTCACTTTGGATCTTGAATTTGATTGTTTGGAGGTAGAAAGGGAGGAGG
AGGGAGGGAGAGAGGGAGGGATACAGGAGTGGGACGAGGAGGCGGAGAAG
GTAGTGAAGGCCTGGAGGAAGGAGGAGAGGAGAAAGAAGCGGGTGGTAGC
TCGGTCATTCACCGTAAGTCCCGTGCATGCCACGCTGATCATGCATTTTG
GAAAAGAAGAGGACGACACTGGCAGTGGTTTGGAGGAGGAACGAAGCCAG
ACAGAGCTAGGGCAACTCACGAGCTTACCCTTGGAAGTCGTGGCCCGCAA
AATGACTTTCTGGGTCAACCAAGGTATCGTCTCCCTCTCCTCCACCCCTT
CCCCCATCCCTTCCTTTGCCTCGCCCTCGGCGGCAGCAGCAGTGGAAATG
GCAGGAGGAGGCTTGACGTCGCCGCCCAATTTTTATCTGCAGCAGCAGCA
AACACAACTTCAGCATCAACCACATCGACCAGGGGAAGTCTACTATAAAT
TGATCACGAAGCAAGATCCCGATGGACCAGATGGACAAGGACACGGAGGA
GGACGAGGAGGATCGTTTGAAGATGATGATTTGGAAGCGGCTGTGTCGTC
TGACGCGCAAGAAGCGAAAGAGACTGACGTGTACATTTCATATGTTTTGG
GGATGCTTGGGACGTATGGAGGGAGGTCAGCGAGGGCAATTCATGACACG
TTGAAGATATGGGCAGGGGGGGATCAACAGACTTATAGCTTGCACCTTGG
AGAGGTCGAAAGGATTCTGCAGAGGCTTGTGGGGGAAGAGAAGCTGGAGA
TGGTGGATGGGGTGTACCAGTTGGCGAATCGACCGGCGCACCATCGCTAA
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Synonyms
Publications