jgi.p|Nanoce1779_2|601445, mRNA_8287 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601445
Unique Name	mRNA_8287
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2094
Alignment location	scaffold_23:273492..276089 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601531
Track	FilteredModels2
ProteinId	601445

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:273492..276089 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601445	gene_8287	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601445	mRNA_8287-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8287	CDS_8287	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:273492..276089+
coding sequence from alignment at scaffold_23:273492..276089+

mRNA sequence

>mRNA_8287 ID=mRNA_8287|Name=jgi.p|Nanoce1779_2|601445|organism=Nannochloropsis oceanica|type=mRNA|length=2094bp
AACAGTACTTTGTCACGACTGAACCCGGGCTCGTTCGTTTTTCGCCTCTA
CAAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAAGAGCAAGCAATGACGG
AGTACATCCAAACAGCCATCGCCGCCGCCCCGGACTTGCAAGAGCCCTTG
AGCCAGCTCGGGGACTTGCACGCCCGCAAGCTCTGGCACCAGCTCACGGA
CGCCTTGCTCACCTTTTTGAAGGACTCAAGTCGTGCCCAGCAAGTGGACT
GCCGGGGCTTATATGACAATTTTATCTGCAAGTTCGAAACGAAGCTCAAC
CCTTTGCGTCTTGCCGCTGTGACCGCCGCTGTCGCCAAGGCCCTCTTGCC
TGATGTGGATGCGGCCCGCACCTTCTTGCAGAACGTGGCGGAAAAACGTG
AGCGATTGGGGCGAGAGGCTGCTTTGCTAATCGATATGGAGATTGTGATG
CTCAAACTTCGACAGGGAGATATGTCCGAGGTAGAGGCGACTTTGAAGGC
AGCCAAAAGCGTGTTGGAGGGCCTGGCAGGTGCGGATGCCATTGTATATT
CATCCTATTATAAGGCAGCGTCGGAGTACCACAAGGTCGTGGGCCCGCCC
GAGGCGTTTTACAAGGATGCGTTGATGTTCTTGGCTTACACGCCTCTGGA
AAGCCTGCCGGTGGAAGAGCAATACACGCTTGCCGTAGACATCTCTCTCG
CGGCACTGACGGGGGATGGCGTGTTTAATTTTGGGGAGGTCTTGGCGACG
CCTATTTTGAGTGTGTTGTCCCAGACGCCGCATGCGTGGTTGTCTGACTT
GCTGCAAGTGTTTGATGCGGGGGATGTCGATAAATTCGCTCAATTGGTGG
AGACTCACCGGGAAGCTTACTTCTCGCAGCCGGCTCTAGCGAATCGCCAA
GAATTCATCAAGGAGAAGGTGGTGCTGCTCTCGTTGATGAATTTGGTGTT
TGAGACTCCGTCTCATGAGAGGACGATTCCGTTTACCACGGTGGCGACCC
GAGGACGGATTGGGGTGGAGCAGGTAGAGTGGTTGTTGATGCGGGCCATG
TCCTTGGGCTTAATTAAGGGGGTTATTGAGGAAGTCGCGCAGGAGGTGAG
CGTGTCGTGGGTGCAGCCGCGGGTGCTGAACCAGGAGCAGGTGCGGCAGC
TGGCAGGGAGGCTGGCGGGCTGGAGTGGGAAGGTGTCGGAGACATTGGGT
TACGTGGAGGGGCAGACGCCTGAGTTGTTCAATTAATTAGCGTAGCGAGA
AAGTGTGCCAGTAAAGGGGGTTCTGATTGCTTTCTCTCCATCACCGGTGT
CAGGGAGGCTGAGGTTGTGAGCCGAGACAGCTCTTTGTGCGGCTTTGTCG
TGGTTTTGCTTGTTGGTGTGTGCCGGGTAGGAGCCAAAACCTGGACTGTG
AAAACGCGTGTGAGACGGGGTGTGCCTGCCTCGAGCCATGGAAGAACGAA
AAAAAATATCGTGAATACATGTGTGGTCCACTGTTTGCTTATTCACACCG
TGTGCTTTGCTCACACCGTGGCTGTGTGGTTATCTGAGATTGGAACGTAA
GGAGTCTGGGATTCTCACCCTTTCACTTGTTCTATCCTCCTCTGTGACTG
CCACCCTCCGGTGCTTGAGACAGGTGAGTTAATATTGACGATGATAACAG
TCACAAGGAGGCATCTAGTTCATATCATTGTCATCGTCAATAGTTCTCTT
ATTTTTGTCGCGCCCTCACGCCTTGGCCTCCTTCATGTCCAACCTTCGCT
TTCACATCTGCTTATGTACCTCTGCTTGTCACATCGCTTCGTTTTCCCCC
CTCGAGCATCTGCTGCCCTTTCCATCATCTTCTTTTCCTTATCGTTCTTG
CTCGCATTGTTATAAACGCGTTTCACTTCCTTCTCACATACAACTTCCCC
TTTCCCTTCTTTTAAAGACACTCCGGCCCCTCCCTCTCTCCCTCCTTCCC
GCTCTCGTTCCTCACACCGCCAGCACCACCAGATCATCCTTCCGCACCCC
ACCCGGATCCTGTCCCCCAAACATCAAAACCCTCGTCTCCCTTACTCCCT
CCTCTCCCTCCCCCTCCCCCTCCTCCCTCCCCTTCCTCCCTCCC

protein sequence of jgi.p|Nanoce1779_2|601445

>mRNA_8287-protein ID=mRNA_8287-protein|Name=jgi.p|Nanoce1779_2|601445|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MTEYIQTAIAAAPDLQEPLSQLGDLHARKLWHQLTDALLTFLKDSSRAQQ
VDCRGLYDNFICKFETKLNPLRLAAVTAAVAKALLPDVDAARTFLQNVAE
KRERLGREAALLIDMEIVMLKLRQGDMSEVEATLKAAKSVLEGLAGADAI
VYSSYYKAASEYHKVVGPPEAFYKDALMFLAYTPLESLPVEEQYTLAVDI
SLAALTGDGVFNFGEVLATPILSVLSQTPHAWLSDLLQVFDAGDVDKFAQ
LVETHREAYFSQPALANRQEFIKEKVVLLSLMNLVFETPSHERTIPFTTV
ATRGRIGVEQVEWLLMRAMSLGLIKGVIEEVAQEVSVSWVQPRVLNQEQV
RQLAGRLAGWSGKVSETLGYVEGQTPELFN*

mRNA from alignment at scaffold_23:273492..276089+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8287 ID=mRNA_8287|Name=jgi.p|Nanoce1779_2|601445|organism=Nannochloropsis oceanica|type=mRNA|length=2598bp|location=Sequence derived from alignment at scaffold_23:273492..276089+ (Nannochloropsis oceanica)
AACAGTACTTTGTCACGACTGAACCCGGGCTCGTTCGTTTTTCGCCTCTA
CAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGC
AAGAGCAAGCAATGACGGAGTACATCCAAACAGCCATCGCCGCCGCCCCG
GACTTGCAAGAGCCCTTGAGCCAGCTCGGGGACTTGCACGCCCGCAAGCT
CTGGCACCAGCTCACGGACGCCTTGCTCACCTTTTTGAAGGACTCAAGTC
GTGCCCAGCAAGTGGACTGCCGGGGCTTATATGACAATTTTATCTGCAAG
TTCGAAACGAAGCTCAACCCTTTGCGTCTTGCCGCTGTGACCGCCGCTGT
CGCCAAGGCCCTCTTGCCTGATGTGGATGCGGCCCGCACCTTCTTGCAGA
ACGTGGCGGAAAAACGTGAGCGATTGGGGCGAGAGGCTGCTTTGCTAATC
GATATGGAGATTGTGATGCTCAAACTTCGACAGGGAGATATGTCCGAGGT
AGAGGCGACTTTGAAGGCAGCCAAAAGCGTGTTGGAGGGCCTGGCAGGTG
CGGATGCCATTGTATATTCATCCTATTATAAGGCAGCGTCGGAGTACCAC
AAGGTCGTGGGCCCGCCCGAGGCGTTTTACAAGGATGCGTTGATGTTCTT
GGCTTACACGCCTCTGGAAAGCCTGCCGGTGGAAGAGCAATACACGCTTG
CCGTAGACATCTCTCTCGCGGCACTGACGGGGGATGGCGTGTTTAATTTT
GGGGAGGTCTTGGCGACGCCTATTTTGAGTGTGTTGTCCCAGACGCCGCA
TGCGTGGTTGTCTGACTTGCTGCAAGTGTTTGATGCGGGGGATGTCGATA
AATTCGCTCAATTGGTGGAGACTCACCGGGAAGCTTACTTCTCGCAGCCG
GCTCTAGCGAATCGCCAAGAATTCATCAAGGAGAAGGTGGTGCTGCTCTC
GTTGATGAATTTGGTGTTTGAGACTCCGTCTCATGAGAGGACGATTCCGT
TTACCACGGTGGCGACCCGAGGACGGATTGGGGTGGAGCAGGTAGAGTGG
TTGTTGATGCGGGCCATGTCCTTGGGCTTAATTAAGGGGGTTATTGAGGA
AGTCGCGCAGGAGGTGAGCGTGTCGTGGGTGCAGCCGCGGGTGCTGAACC
AGGAGCAGGTGCGGCAGCTGGCAGGGAGGCTGGCGGGCTGGAGTGGGAAG
GTGTCGGAGACATTGGGTTACGTGGAGGGGCAGACGCCTGAGTTGTTCAA
TTAATTAGCGTAGCGAGAAAGTGTGCCAGTAAAGGGGGTTCTGATTGCTT
TCTCTCCATCACCGGTGTCAGGGAGGCTGAGGTTGTGAGCCGAGACAGCT
CTTTGTGCGGCTTTGTCGTGGTTTTGCTTGTTGGTGTGTGCCGGGTAGGA
GCCAAAACCTGGACTGTGAAAACGCGTGTGAGACGGGGTGTGCCTGCCTC
GAGCCATGGAAGAACGAAAAAAAATATCGTGAATACATGTGTGGTCCACT
GTTTGCTTATTCACACCGTGTGCTTTGCTCACACCGTGGCTGTGTGGTTA
TCTGAGATTGGAACGTAAGGAGTCTGGGATTCTCACCCTTTCACTTGTTC
TATCCTCCTCTGTGACTGCCACCCTCCGGTGCTTGAGACAGGTGAGTTAA
TATTGACGATGATAACAGTCACAAGGAGGCATCTAGTTCATATCATTGTC
ATCGTCAATAGTTCTCTTATTTTTGTCGCGCCCTCACGCCTTGGCCTCCT
TCATGTCCAACCTTCGCTTTCACATCTGCTTATGTACCTCTGCTTGTCAC
ATCGCTTCGTTTTCCCCCCTCGAGCATCTGCTGCCCTTTCCATCATCTTC
TTTTCCTTATCGTTCTTGCTCGCATTGTTATAAACGCGTTTCACTTCCTT
CTCACATACAACTTCCCCTTTCCCTTCTTTTAAAGACACTCCGGCCCCTC
CCTCTCTCCCTCCTTCCCGCTCTCGTTCCTCACACCGCCAGCACCACCAG
ATCATCCTTCCGCACCCCACCCGGATCCTGTCCCCCAAACATCAAAACCC
TCGTCTCCCTTACTCCCTCCTCTCCCTCCCCCTCCCCCTCCTCCTCTCCT
CTATAACCCCCCACCCTGGCCAAAACCGCCGTGTGCCCTACCACCACCCC
AGGACCCTTATCACTCCCTCCCTCCTTCGTCCCCTCCACCTCCACCTTCT
TCCACTCCCAACTCTCCGTGTCCAGCACAAAGGCATCGTCATACATGATC
GTATCGTCGCTTCTTTCGTCCTGTGGGTCCCATCCTCCCTGAATCAAAAT
CGATTTCCCATCCTCCAGCAAACACGCCGCGTGGCCCGTCCTCTTTTTAG
GCCTCTCCTTCCCCACCACCTCCGGGTGGAACCATTCCCACCCGTCGTCC
CTCCCTCCCTCCCTCCCGCCCTCTGCCACCTTCAACACATGGACCTTATC
GAAACATGTCTCCCCATTATTCCCCCCAAAATAAACAATCGATGTCCTCT
GCCCCCCCCCAACCCCTCTTCCCTCTTTTCCTTCCTCCTCCTTCATAGCA
GAAGTAGGCGAAGACCCCACCGATAAGTTCCTCCCCTTCCTCCCTCCC

Coding sequence (CDS) from alignment at scaffold_23:273492..276089+

>mRNA_8287 ID=mRNA_8287|Name=jgi.p|Nanoce1779_2|601445|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_23:273492..276089+ (Nannochloropsis oceanica)
ATGACGGAGTACATCCAAACAGCCATCGCCGCCGCCCCGGACTTGCAAGA
GCCCTTGAGCCAGCTCGGGGACTTGCACGCCCGCAAGCTCTGGCACCAGC
TCACGGACGCCTTGCTCACCTTTTTGAAGGACTCAAGTCGTGCCCAGCAA
GTGGACTGCCGGGGCTTATATGACAATTTTATCTGCAAGTTCGAAACGAA
GCTCAACCCTTTGCGTCTTGCCGCTGTGACCGCCGCTGTCGCCAAGGCCC
TCTTGCCTGATGTGGATGCGGCCCGCACCTTCTTGCAGAACGTGGCGGAA
AAACGTGAGCGATTGGGGCGAGAGGCTGCTTTGCTAATCGATATGGAGAT
TGTGATGCTCAAACTTCGACAGGGAGATATGTCCGAGGTAGAGGCGACTT
TGAAGGCAGCCAAAAGCGTGTTGGAGGGCCTGGCAGGTGCGGATGCCATT
GTATATTCATCCTATTATAAGGCAGCGTCGGAGTACCACAAGGTCGTGGG
CCCGCCCGAGGCGTTTTACAAGGATGCGTTGATGTTCTTGGCTTACACGC
CTCTGGAAAGCCTGCCGGTGGAAGAGCAATACACGCTTGCCGTAGACATC
TCTCTCGCGGCACTGACGGGGGATGGCGTGTTTAATTTTGGGGAGGTCTT
GGCGACGCCTATTTTGAGTGTGTTGTCCCAGACGCCGCATGCGTGGTTGT
CTGACTTGCTGCAAGTGTTTGATGCGGGGGATGTCGATAAATTCGCTCAA
TTGGTGGAGACTCACCGGGAAGCTTACTTCTCGCAGCCGGCTCTAGCGAA
TCGCCAAGAATTCATCAAGGAGAAGGTGGTGCTGCTCTCGTTGATGAATT
TGGTGTTTGAGACTCCGTCTCATGAGAGGACGATTCCGTTTACCACGGTG
GCGACCCGAGGACGGATTGGGGTGGAGCAGGTAGAGTGGTTGTTGATGCG
GGCCATGTCCTTGGGCTTAATTAAGGGGGTTATTGAGGAAGTCGCGCAGG
AGGTGAGCGTGTCGTGGGTGCAGCCGCGGGTGCTGAACCAGGAGCAGGTG
CGGCAGCTGGCAGGGAGGCTGGCGGGCTGGAGTGGGAAGGTGTCGGAGAC
ATTGGGTTACGTGGAGGGGCAGACGCCTGAGTTGTTCAATTAA

Synonyms

Publications