jgi.p|Nanoce1779_2|601426, mRNA_8280 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601426
Unique Name	mRNA_8280
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1494
Alignment location	scaffold_23:261048..262789 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601512
Track	FilteredModels2
ProteinId	601426

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:261048..262789 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601426	gene_8280	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601426	mRNA_8280-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8280	CDS_8280	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:261048..262789+
coding sequence from alignment at scaffold_23:261048..262789+

mRNA sequence

>mRNA_8280 ID=mRNA_8280|Name=jgi.p|Nanoce1779_2|601426|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
AGGCAGCGGCAAAAAGCCCGTCTCGTCCAAGCCCATTCCACCGCTTCTGC
AGCCACTCACCCCTCCAACATGGTCCGCACATTTTCCTCCCTCCTCTGTA
CTCTCACCCGCACCGCAAACGCGACTGTCAGCACCGCGCTAACGCATCGC
TATGTGCTCCGAGCCTACCGTCCCTCCTTCATTCCCAAGCGTCATGCTTT
ATCCTCCACTTCGTCCTCCCTCCAAAAGCAGCCAAAACGCCACCAAATCC
TCGTCGTCGGCGCCGGTCGTATGGGCCACATCCGTGCCGCTGCCTTTTAT
GGCTCCCGCTCATCCCTTCTGGCTGGCATCGTGGATTCAGACCCCGTCAA
GGCCCAAGAATTAGCTCACATTTATCACACTCCATTTTTCTCCGACGTCA
CTTCTGCCCTGCGAGCCTTGCCTGAGTTGAGTGGGGTATGGATATGTACC
CCCACGCCTTGTCATAGAGAGAGTTTAAAGGAGGTGATAGGCGCGGGTCT
GGCCGTGGGGATCGAGAAGCCAGTGGGAACTAGCCAGAAGGAGATCCACG
AATGTTATGATTCGGCAGCGGCTGCAGAACAAAGAAGAGGTGGAAAAACG
GGGAGAAATGTCCCCCTCTACTGCTCATTTCAACGGAGGATAGATCCGAG
CTATGTGAATCTATTGAAAAGGGTGAGGGACGGGGAGATAGGAGAGGTGA
GGTCGGTGCATGCGGTTTTTCGAGACCATCCCGTGCCGTCGTTGGAGTTT
CTGAAGCTTGGCGGCGATATATTCCATGATCTGGTTGTACACGACGCCGA
CTACATCATGCACCTGCTGCAAGCCACTCCCTCCTCCATCTACGCCCTCG
GTTCCTCCTTCCATCCCTCCCTTCGTGCCCACCAAATATTTGACTCCGCG
AATGTGCTCCTCCATTTCGAAAAGTCCGCTGTCATTGCTACCATTGAGCT
AAGTCGTTCGTCTCCCATAGGGGGGTATGACCAACGGATAGAAGTGTGTG
GGACAAAGGGGGTTCTGGAAATTAAAAATGAGTTAACCACCCACACCGTG
TGTAGTTCAATGGGAGGAGGAAGGAGTGAGGCAATTCCGGTCAACTCGTT
TCCGGAGCGTTTCGCACGGGCATATGGGATGGAAGTGGAAGAATTCATTG
ACGTTATAGAAGGAAAAAAAGAGCCAATGGTGACCAAAGGAGATAGTCTG
AACAGTACACGGATAGCGGAAGCGTGTGGGCTGTCAGTGCAAAAAGGAGG
ACCAGTGCCTTTCTAGACAAGACGGAGGTGAAGAAGGGTGGAGAACAGGG
GTAGAATGTATTATGGGAGTTTGTCGGAGAAATGTAGAAAACGAATAATA
TGACGGAAAGCGGATTAGTGTGTAGGGGGAGGACACAGAGGAGGGATTAG
TCGGATTTATCCCGTGGTTTGCAGGATGCAGTTAGAAGGAAACATAAAAT
AAACGGAACATGACGGCATGTGCTAGTAGTTATGACTTATCGGG

protein sequence of jgi.p|Nanoce1779_2|601426

>mRNA_8280-protein ID=mRNA_8280-protein|Name=jgi.p|Nanoce1779_2|601426|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MVRTFSSLLCTLTRTANATVSTALTHRYVLRAYRPSFIPKRHALSSTSSS
LQKQPKRHQILVVGAGRMGHIRAAAFYGSRSSLLAGIVDSDPVKAQELAH
IYHTPFFSDVTSALRALPELSGVWICTPTPCHRESLKEVIGAGLAVGIEK
PVGTSQKEIHECYDSAAAAEQRRGGKTGRNVPLYCSFQRRIDPSYVNLLK
RVRDGEIGEVRSVHAVFRDHPVPSLEFLKLGGDIFHDLVVHDADYIMHLL
QATPSSIYALGSSFHPSLRAHQIFDSANVLLHFEKSAVIATIELSRSSPI
GGYDQRIEVCGTKGVLEIKNELTTHTVCSSMGGGRSEAIPVNSFPERFAR
AYGMEVEEFIDVIEGKKEPMVTKGDSLNSTRIAEACGLSVQKGGPVPF*

mRNA from alignment at scaffold_23:261048..262789+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8280 ID=mRNA_8280|Name=jgi.p|Nanoce1779_2|601426|organism=Nannochloropsis oceanica|type=mRNA|length=1742bp|location=Sequence derived from alignment at scaffold_23:261048..262789+ (Nannochloropsis oceanica)
AGGCAGCGGCAAAAAGCCCGTCTCGTCCAAGCCCATTCCACCGCTTCTGC
AGCCACTCACCCCTCCAACATGGTCCGCACATTTTCCTCCCTCCTCTGTA
CTCTCACCCGCACCGCAAACGCGACTGTCAGCACCGCGCTAACGCATCGC
TATGTGCTCCGAGCCTACCGTCCCTCCTTCATTCCCAAGCGTCATGCTTT
ATCCTCCACTTCGTCCTCCCTCCAAAAGCAGCCAAAACGCCACCAAATCC
TCGTCGTCGGCGCCGGTCGTATGGGCCACATCCGTGCCGCTGCCTTTTAT
GGCTCCCGCTCATCCCTTCTGGCTGGCATCGTGGATTCAGACCCCGTCAA
GGCCCAAGAATTAGCTCACATTTATCACACTCCATTTTTCTCCGACGTCA
CTTCTGCCCTGCGAGCCTTGCCTGAGTTGAGTGGGGTATGGATATGTACC
CCCACGCCTTGTCATAGAGAGAGTTTAAAGGAGGTGATAGGCGCGGGTCT
GGCCGTGGGGATCGAGAAGCCAGTGGGAACTAGCCAGAAGGAGATCCACG
AATGTTATGATTCGGCAGCGGCTGCAGAACAAAGAAGAGGTGGAAAAACG
GGGAGAAATGTCCCCCTCTACTGCTCATTTCAACGGAGGATAGATCCGAG
CTATGTGAATCTATTGAAAAGGGTGAGGGACGGGGAGATAGGAGAGGTGA
GGTCGGTGCATGCGGTTTTTCGAGACCATCCCGTGCCGTCGTTGGAGTTT
CTGAAGCTTGGCGGCGATATATTCCATGATCTGGTTGTACGTAGGCAGGG
AGGGAGTAAGGGAGACAGGGAGGGTGAATGGTATGAGGAGAACATGACTG
AAAGGATGAAGTAGTACTATGGCATAGTAGTTTGGAAGGAAAGCCTTTTC
CCCTCATCCCTCCCTCCGTTTCCCCATCCCTCTCCCTCTTCACTTCCTTC
TTCCTTTCCCCTTTTCCCTAACAACAGCTTTTGAAAATTATCGCTGAAAT
CTAACCTCTCCCTCCTTACCTCCCTCCTCTCAAGGTACACGACGCCGACT
ACATCATGCACCTGCTGCAAGCCACTCCCTCCTCCATCTACGCCCTCGGT
TCCTCCTTCCATCCCTCCCTTCGTGCCCACCAAATATTTGACTCCGCGAA
TGTGCTCCTCCATTTCGAAAAGTCCGCTGTCATTGCTACCATTGAGCTAA
GTCGTTCGTCTCCCATAGGGGGGTATGACCAACGGATAGAAGTGTGTGGG
ACAAAGGGGGTTCTGGAAATTAAAAATGAGTTAACCACCCACACCGTGTG
TAGTTCAATGGGAGGAGGAAGGAGTGAGGCAATTCCGGTCAACTCGTTTC
CGGAGCGTTTCGCACGGGCATATGGGATGGAAGTGGAAGAATTCATTGAC
GTTATAGAAGGAAAAAAAGAGCCAATGGTGACCAAAGGAGATAGTCTGAA
CAGTACACGGATAGCGGAAGCGTGTGGGCTGTCAGTGCAAAAAGGAGGAC
CAGTGCCTTTCTAGACAAGACGGAGGTGAAGAAGGGTGGAGAACAGGGGT
AGAATGTATTATGGGAGTTTGTCGGAGAAATGTAGAAAACGAATAATATG
ACGGAAAGCGGATTAGTGTGTAGGGGGAGGACACAGAGGAGGGATTAGTC
GGATTTATCCCGTGGTTTGCAGGATGCAGTTAGAAGGAAACATAAAATAA
ACGGAACATGACGGCATGTGCTAGTAGTTATGACTTATCGGG

Coding sequence (CDS) from alignment at scaffold_23:261048..262789+

>mRNA_8280 ID=mRNA_8280|Name=jgi.p|Nanoce1779_2|601426|organism=Nannochloropsis oceanica|type=CDS|length=2394bp|location=Sequence derived from alignment at scaffold_23:261048..262789+ (Nannochloropsis oceanica)
ATGGTCCGCACATTTTCCTCCCTCCTCTGTACTCTCACCCGCACCGCAAA
CGCGACTGTCAGCACCGCGCTAACGCATCGCTATGTGCTCCGAGCCTACC
GTCCCTCCTTCATTCCCAAGCGTCATGCTTTATCCTCCACTTCGTCCTCC
CTCCAAAAGCAGCCAAAACGCCACCAAATCCTCGTCGTCGGCGCCGGTCG
TATGGGCCACATCCGTGCCGCTGCCTTTTATGGCTCCCGCTCATCCCTTC
TGGCTGGCATCGTGGATTCAGACCCCGTCAAGGCCCAAGAATTAGCTCAC
ATTTATCACACTCCATTTTTCTCCGACGTCACTTCTGCCCTGCGAGCCTT
GCCTGAGTTGAGTGGGGTATGGATATGTACCCCCACGCCTTGTCATAGAG
AGAGTTTAAAGGAGGTGATAGGCGCGGGTCTGGCCGTGGGGATCGAGAAG
CCAGTGGGAACTAGCCAGAAGGAGATCCACGAATGTTATGATTCGGCAGC
GGCTGCAGAACAAAGAAGAGGTGGAAAAACGGGGAGAAATGTCCCCCTCT
ACTGCTCATTTCAACGGAGGATAGATCCGAGCTATGTGAATCTATTGAAA
AGGGTGAGGGACGGGGAGATAGGAGAGGTGAGGTCGGTGCATGCGGTTTT
TCGAGACCATCCCGTGCCGTCGTTGGAGTTTCTGAAGCTTGGCGGCGATA
TATTCCATGATCTGGTTGTACACGACGCCGACTACATCATGCACCTGCTG
CAAGCCACTCCCTCCTCCATCTACGCCCTCGGTTCCTCCTTCCATCCCTC
CCTTCGTGCCCACCAAATATTTGACTCCGCGAATGTGCTCCTCCATTTCG
AAAAGTCCGCTGTCATTGCTACCATTGAGCTAAGTCGTTCGTCTCCCATA
GGGGGGTATGACCAACGGATAGAAGTGTGTGGGACAAAGGGGGTTCTGGA
AATTAAAAATGAGTTAACCACCCACACCGTGTGTAGTTCAATGGGAGGAG
GAAGGAGTGAGGCAATTCCGGTCAACTCGTTTCCGGAGCGTTTCGCACGG
GCATATGGGATGGAAGTGGAAGAATTCATTGACGTTATAGAAGGAAAAAA
AGAGCCAATGGTGACCAAAGGAGATAGTCTGAACAGTACACGGATAGCGG
AAGCGTGTGGGCTGTCAGTGCAAAAAGGAGGACCAGTGCCTTTCTAGATG
GTCCGCACATTTTCCTCCCTCCTCTGTACTCTCACCCGCACCGCAAACGC
GACTGTCAGCACCGCGCTAACGCATCGCTATGTGCTCCGAGCCTACCGTC
CCTCCTTCATTCCCAAGCGTCATGCTTTATCCTCCACTTCGTCCTCCCTC
CAAAAGCAGCCAAAACGCCACCAAATCCTCGTCGTCGGCGCCGGTCGTAT
GGGCCACATCCGTGCCGCTGCCTTTTATGGCTCCCGCTCATCCCTTCTGG
CTGGCATCGTGGATTCAGACCCCGTCAAGGCCCAAGAATTAGCTCACATT
TATCACACTCCATTTTTCTCCGACGTCACTTCTGCCCTGCGAGCCTTGCC
TGAGTTGAGTGGGGTATGGATATGTACCCCCACGCCTTGTCATAGAGAGA
GTTTAAAGGAGGTGATAGGCGCGGGTCTGGCCGTGGGGATCGAGAAGCCA
GTGGGAACTAGCCAGAAGGAGATCCACGAATGTTATGATTCGGCAGCGGC
TGCAGAACAAAGAAGAGGTGGAAAAACGGGGAGAAATGTCCCCCTCTACT
GCTCATTTCAACGGAGGATAGATCCGAGCTATGTGAATCTATTGAAAAGG
GTGAGGGACGGGGAGATAGGAGAGGTGAGGTCGGTGCATGCGGTTTTTCG
AGACCATCCCGTGCCGTCGTTGGAGTTTCTGAAGCTTGGCGGCGATATAT
TCCATGATCTGGTTGTACACGACGCCGACTACATCATGCACCTGCTGCAA
GCCACTCCCTCCTCCATCTACGCCCTCGGTTCCTCCTTCCATCCCTCCCT
TCGTGCCCACCAAATATTTGACTCCGCGAATGTGCTCCTCCATTTCGAAA
AGTCCGCTGTCATTGCTACCATTGAGCTAAGTCGTTCGTCTCCCATAGGG
GGGTATGACCAACGGATAGAAGTGTGTGGGACAAAGGGGGTTCTGGAAAT
TAAAAATGAGTTAACCACCCACACCGTGTGTAGTTCAATGGGAGGAGGAA
GGAGTGAGGCAATTCCGGTCAACTCGTTTCCGGAGCGTTTCGCACGGGCA
TATGGGATGGAAGTGGAAGAATTCATTGACGTTATAGAAGGAAAAAAAGA
GCCAATGGTGACCAAAGGAGATAGTCTGAACAGTACACGGATAGCGGAAG
CGTGTGGGCTGTCAGTGCAAAAAGGAGGACCAGTGCCTTTCTAG

Synonyms

Publications