|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 673316 |
| Track | FilteredModels2 |
| ProteinId | 673230 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_23 | supercontig | scaffold_23:258711..260861 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8279 ID=mRNA_8279|Name=jgi.p|Nanoce1779_2|673230|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp
GAGACAGGCATGGGTTTCATGCTAGTCATTGCGACCACACCCCTCTCCAC
ACACACACAGCAGAGTTTTCAACCACATATACACCATGCACACACAGACA
GACGTACATGGCAAAAGCCACTTCATAGCTGCCGTGCCCTTGTGCGTGGT
GGTCATGATGCTCTGGTTGCTCGAAAGCTTGAAGCTCCTCCGGCGAGAGG
CGATCACCTTTCGACCCTCCCTCCCTAAGCCTAGTCCCAACTCTCAACCA
CACACAGTACATACAGATACAGCTACATACCATGGACACCTGTGAGGAAT
GCGAGGAGGCGCAGGCGGCCTTGCGGTGTGAGGATTGCGACTTGCTATAC
TGTCACCCGTGCGGCCAGCGCTTTCACACCAAAGGCAATCGGGCAAAGCA
TACTCTCCACTCCCTCCTCCCCTCCGCCGCGCCCTCCGATGGAGACGATA
TGGTCTATACCGGTAACGACGAGATGCTGCCCCCATCTGCGGCTTCCTTG
TCGTCTCGACGCACCAGCAGCAACGGCGGTAGCTTGCTGGGTCCTCCCCT
ACGACAGACCACCCCACAGTCCCAACAAAAACGTCCCCGGTCACGCATTC
CTAGAAGCAATAGCAGTAGCAGCAGCAGCAGCAGTAGCAGCAGCATGAAT
CCGATGATGATGATGACGATGACGGCCGAAGGAGGAGGAGGAGGAGCCTT
CCCGCCACAACCATCACAGGCCGCAGCGGCAGGAGCAGCCTTAGCTCAAC
CACCCCCGCCTCCGGGTGTGCTGACCGTGAACCAAAATATTATTTCCTGC
AATAATACGGAAAAGAAAAAGAGCAACAATTTTCACCCCCGTGCCTGTGG
CAGCAGCATCGGTCTCACTGCCGATTTTAAAAAATCCACCACCACAACCA
CCACTACTAGCAAAGCCGTCTGCACCTCGACCTCCTCCTGCCTCTCTCTC
GCCCACCCCCAAATGAAATGGAGCACCAACGATTTCACCGTCGGTCGTCC
TCTGGGCCGTGGGAAATTCGGGAACGTCTACATGGCCAAAGAAAATCGAA
CGTCCAAGCCTGTGGCCCTCAAAGTCATCTTCAAGAACACTCTCACTTCC
TCCAAGAGCTATAATCTCCTCCGACGAGAAGTCGAGATTCAGATCAGGCT
GCGCCATCCAAACATTCTTCGACTGTACGGGTATTTCCACGATGCCAAAA
GCTGCTACCTAGTCCTTGAGTTGGCGCCTGGAGGAGAGCTCTATAAGATT
CTGAAGAGGCAACCAGAGGGTCGGTTTGGGGGGGGAGAGGAAGGAGGGAG
GGAGGGAGGGGGGGAGGGGGTGGCCAGGGCATACGTCAGGCAGTTGGTGA
AGGCCGTGCAGTACATACATAATTGTAGCGTCATCCATCGCGACATCAAG
CCGGAGAATCTGCTGGTATCCTACCCCTACGATCCTCCCTCGTCCTCCCT
CCCTTCCTCGTCCTCCGTTGGTGACACCCGACGGAATAGCAGCCTAGGGG
GCGGAGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGCTGTCATCAAG
ATCTGTGACTTTGGATGGAGTGTGCATGCACCCAAACCAGATTTTCATCT
GAGATCGACGCTGTGCGGGACTCCAGAATATATCGCACCTGAAATGGTGG
GGGGGAGAGAAGGAGGAAGGGAGGGAGGGAAGGGGAGGTATGATGACCGG
GTTGATGTGTGGGCGGTGGGTATCTTTGCGTATGAGTTATTACAGGGACA
AACGCCCTTCTATGTCGGGGAAGGCGAGAAAGAGGAGGGTGGGCGGAAGG
AGGAAGGAGAAGGGGAGGACGGCGAGGGAGGGGGGGAGGAGGTGAAGAGG
GGACGGGAAGAGATTTACAGACGGATTGTGGCATTTGAAGGCGTGCTGAA
GTGGGTGCATCCAGTGTCGGAGGAGGCGGGAGATTTCATCACGAGGTTGG
TTTGTCCGGATCCGAGGGAGAGAATGAAGTTGGAAGACGCCCTGTGCCAC
CCTTGGTTGGCGACGGAGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|673230 >mRNA_8279-protein ID=mRNA_8279-protein|Name=jgi.p|Nanoce1779_2|673230|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp
MDTCEECEEAQAALRCEDCDLLYCHPCGQRFHTKGNRAKHTLHSLLPSAA
PSDGDDMVYTGNDEMLPPSAASLSSRRTSSNGGSLLGPPLRQTTPQSQQK
RPRSRIPRSNSSSSSSSSSSSMNPMMMMTMTAEGGGGGAFPPQPSQAAAA
GAALAQPPPPPGVLTVNQNIISCNNTEKKKSNNFHPRACGSSIGLTADFK
KSTTTTTTTSKAVCTSTSSCLSLAHPQMKWSTNDFTVGRPLGRGKFGNVY
MAKENRTSKPVALKVIFKNTLTSSKSYNLLRREVEIQIRLRHPNILRLYG
YFHDAKSCYLVLELAPGGELYKILKRQPEGRFGGGEEGGREGGGEGVARA
YVRQLVKAVQYIHNCSVIHRDIKPENLLVSYPYDPPSSSLPSSSSVGDTR
RNSSLGGGAGREGGREGGEAVIKICDFGWSVHAPKPDFHLRSTLCGTPEY
IAPEMVGGREGGREGGKGRYDDRVDVWAVGIFAYELLQGQTPFYVGEGEK
EEGGRKEEGEGEDGEGGGEEVKRGREEIYRRIVAFEGVLKWVHPVSEEAG
DFITRLVCPDPRERMKLEDALCHPWLATE* back to topmRNA from alignment at scaffold_23:258711..260861- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8279 ID=mRNA_8279|Name=jgi.p|Nanoce1779_2|673230|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp|location=Sequence derived from alignment at scaffold_23:258711..260861- (Nannochloropsis oceanica)
GAGACAGGCATGGGTTTCATGCTAGTCATTGCGACCACACCCCTCTCCAC
ACACACACAGCAGAGTTTTCAACCACATATACACCATGCACACACAGACA
GACGTACATGGCAAAAGCCACTTCATAGCTGCCGTGCCCTTGTGCGTGGT
GGTCATGATGCTCTGGTTGCTCGAAAGCTTGAAGCTCCTCCGGCGAGAGG
CGATCACCTTTCGACCCTCCCTCCCTAAGCCTAGTCCCAACTCTCAACCA
CACACAGTACATACAGATACAGCTACATACCATGGACACCTGTGAGGAAT
GCGAGGAGGCGCAGGCGGCCTTGCGGTGTGAGGATTGCGACTTGCTATAC
TGTCACCCGTGCGGCCAGCGCTTTCACACCAAAGGCAATCGGGCAAAGCA
TACTCTCCACTCCCTCCTCCCCTCCGCCGCGCCCTCCGATGGAGACGATA
TGGTCTATACCGGTAACGACGAGATGCTGCCCCCATCTGCGGCTTCCTTG
TCGTCTCGACGCACCAGCAGCAACGGCGGTAGCTTGCTGGGTCCTCCCCT
ACGACAGACCACCCCACAGTCCCAACAAAAACGTCCCCGGTCACGCATTC
CTAGAAGCAATAGCAGTAGCAGCAGCAGCAGCAGTAGCAGCAGCATGAAT
CCGATGATGATGATGACGATGACGGCCGAAGGAGGAGGAGGAGGAGCCTT
CCCGCCACAACCATCACAGGCCGCAGCGGCAGGAGCAGCCTTAGCTCAAC
CACCCCCGCCTCCGGGTGTGCTGACCGTGAACCAAAATATTATTTCCTGC
AATAATACGGAAAAGAAAAAGAGCAACAATTTTCACCCCCGTGCCTGTGG
CAGCAGCATCGGTCTCACTGCCGATTTTAAAAAATCCACCACCACAACCA
CCACTACTAGCAAAGCCGTCTGCACCTCGACCTCCTCCTGCCTCTCTCTC
GCCCACCCCCAAATGAAATGGAGCACCAACGATTTCACCGTCGGTCGTCC
TCTGGGCCGTGGGAAATTCGGGAACGTCTACATGGCCAAAGAAAATCGAA
CGTCCAAGCCTGTGGCCCTCAAAGTCATCTTCAAGAACACTCTCACTTCC
TCCAAGAGCTATAATCTCCTCCGACGAGAAGTCGAGATTCAGATCAGGTG
CGCCTTTTTCAAATCTCCGTCATTGTCCTCCATCCCTTTTCCCTTGTATT
CACACCCCCGCACAACACACTCTCAATCAATCACTAATCTTCCCTTCTTG
CCCTCCCTCCCTCCCTCCCTCCCCAAGGCTGCGCCATCCAAACATTCTTC
GACTGTACGGGTATTTCCACGATGCCAAAAGCTGCTACCTAGTCCTTGAG
TTGGCGCCTGGAGGAGAGCTCTATAAGATTCTGAAGAGGCAACCAGAGGG
TCGGTTTGGGGGGGGAGAGGAAGGAGGGAGGGAGGGAGGGGGGGAGGGGG
TGGCCAGGGCATACGTCAGGCAGTTGGTGAAGGCCGTGCAGTACATACAT
AATTGTAGCGTCATCCATCGCGACATCAAGCCGGAGAATCTGCTGGTATC
CTACCCCTACGATCCTCCCTCGTCCTCCCTCCCTTCCTCGTCCTCCGTTG
GTGACACCCGACGGAATAGCAGCCTAGGGGGCGGAGCAGGGAGGGAGGGA
GGGAGGGAGGGAGGGGAGGCTGTCATCAAGATCTGTGACTTTGGATGGAG
TGTGCATGCACCCAAACCAGATTTTCATCTGAGATCGACGCTGTGCGGGA
CTCCAGAATATATCGCACCTGAAATGGTGGGGGGGAGAGAAGGAGGAAGG
GAGGGAGGGAAGGGGAGGTATGATGACCGGGTTGATGTGTGGGCGGTGGG
TATCTTTGCGTATGAGTTATTACAGGGACAAACGCCCTTCTATGTCGGGG
AAGGCGAGAAAGAGGAGGGTGGGCGGAAGGAGGAAGGAGAAGGGGAGGAC
GGCGAGGGAGGGGGGGAGGAGGTGAAGAGGGGACGGGAAGAGATTTACAG
ACGGATTGTGGCATTTGAAGGCGTGCTGAAGTGGGTGCATCCAGTGTCGG
AGGAGGCGGGAGATTTCATCACGAGGTTGGTTTGTCCGGATCCGAGGGAG
AGAATGAAGTTGGAAGACGCCCTGTGCCACCCTTGGTTGGCGACGGAGTG
A back to topCoding sequence (CDS) from alignment at scaffold_23:258711..260861- >mRNA_8279 ID=mRNA_8279|Name=jgi.p|Nanoce1779_2|673230|organism=Nannochloropsis oceanica|type=CDS|length=3480bp|location=Sequence derived from alignment at scaffold_23:258711..260861- (Nannochloropsis oceanica)
GCTGCGCCATCCAAACATTCTTCGACTGTACGGGTATTTCCACGATGCCA
AAAGCTGCTACCTAGTCCTTGAGTTGGCGCCTGGAGGAGAGCTCTATAAG
ATTCTGAAGAGGCAACCAGAGGGTCGGTTTGGGGGGGGAGAGGAAGGAGG
GAGGGAGGGAGGGGGGGAGGGGGTGGCCAGGGCATACGTCAGGCAGTTGG
TGAAGGCCGTGCAGTACATACATAATTGTAGCGTCATCCATCGCGACATC
AAGCCGGAGAATCTGCTGGTATCCTACCCCTACGATCCTCCCTCGTCCTC
CCTCCCTTCCTCGTCCTCCGTTGGTGACACCCGACGGAATAGCAGCCTAG
GGGGCGGAGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGCTGTCATC
AAGATCTGTGACTTTGGATGGAGTGTGCATGCACCCAAACCAGATTTTCA
TCTGAGATCGACGCTGTGCGGGACTCCAGAATATATCGCACCTGAAATGG
TGGGGGGGAGAGAAGGAGGAAGGGAGGGAGGGAAGGGGAGGTATGATGAC
CGGGTTGATGTGTGGGCGGTGGGTATCTTTGCGTATGAGTTATTACAGGG
ACAAACGCCCTTCTATGTCGGGGAAGGCGAGAAAGAGGAGGGTGGGCGGA
AGGAGGAAGGAGAAGGGGAGGACGGCGAGGGAGGGGGGGAGGAGGTGAAG
AGGGGACGGGAAGAGATTTACAGACGGATTGTGGCATTTGAAGGCGTGCT
GAAGTGGGTGCATCCAGTGTCGGAGGAGGCGGGAGATTTCATCACGAGGT
TGGTTTGTCCGGATCCGAGGGAGAGAATGAAGTTGGAAGACGCCCTGTGC
CACCCTTGGTTGGCGACGGAGTGAATGGACACCTGTGAGGAATGCGAGGA
GGCGCAGGCGGCCTTGCGGTGTGAGGATTGCGACTTGCTATACTGTCACC
CGTGCGGCCAGCGCTTTCACACCAAAGGCAATCGGGCAAAGCATACTCTC
CACTCCCTCCTCCCCTCCGCCGCGCCCTCCGATGGAGACGATATGGTCTA
TACCGGTAACGACGAGATGCTGCCCCCATCTGCGGCTTCCTTGTCGTCTC
GACGCACCAGCAGCAACGGCGGTAGCTTGCTGGGTCCTCCCCTACGACAG
ACCACCCCACAGTCCCAACAAAAACGTCCCCGGTCACGCATTCCTAGAAG
CAATAGCAGTAGCAGCAGCAGCAGCAGTAGCAGCAGCATGAATCCGATGA
TGATGATGACGATGACGGCCGAAGGAGGAGGAGGAGGAGCCTTCCCGCCA
CAACCATCACAGGCCGCAGCGGCAGGAGCAGCCTTAGCTCAACCACCCCC
GCCTCCGGGTGTGCTGACCGTGAACCAAAATATTATTTCCTGCAATAATA
CGGAAAAGAAAAAGAGCAACAATTTTCACCCCCGTGCCTGTGGCAGCAGC
ATCGGTCTCACTGCCGATTTTAAAAAATCCACCACCACAACCACCACTAC
TAGCAAAGCCGTCTGCACCTCGACCTCCTCCTGCCTCTCTCTCGCCCACC
CCCAAATGAAATGGAGCACCAACGATTTCACCGTCGGTCGTCCTCTGGGC
CGTGGGAAATTCGGGAACGTCTACATGGCCAAAGAAAATCGAACGTCCAA
GCCTGTGGCCCTCAAAGTCATCTTCAAGAACACTCTCACTTCCTCCAAGA
GCTATAATCTCCTCCGACGAGAAGTCGAGATTCAGATCAGGCTGCGCCAT
CCAAACATTCTTCGACTGTACGGGTATTTCCACGATGCCAAAAGCTGCTA
CCTAGTCCTTGAGTTGGCGCCTGGAGGAGAGCTCTATAAGATTCTGAAGA
GGCAACCAGAGGGTCGGTTTGGGGGGGGAGAGGAAGGAGGGAGGGAGGGA
GGGGGGGAGGGGGTGGCCAGGGCATACGTCAGGCAGTTGGTGAAGGCCGT
GCAGTACATACATAATTGTAGCGTCATCCATCGCGACATCAAGCCGGAGA
ATCTGCTGGTATCCTACCCCTACGATCCTCCCTCGTCCTCCCTCCCTTCC
TCGTCCTCCGTTGGTGACACCCGACGGAATAGCAGCCTAGGGGGCGGAGC
AGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGCTGTCATCAAGATCTGTG
ACTTTGGATGGAGTGTGCATGCACCCAAACCAGATTTTCATCTGAGATCG
ACGCTGTGCGGGACTCCAGAATATATCGCACCTGAAATGGTGGGGGGGAG
AGAAGGAGGAAGGGAGGGAGGGAAGGGGAGGTATGATGACCGGGTTGATG
TGTGGGCGGTGGGTATCTTTGCGTATGAGTTATTACAGGGACAAACGCCC
TTCTATGTCGGGGAAGGCGAGAAAGAGGAGGGTGGGCGGAAGGAGGAAGG
AGAAGGGGAGGACGGCGAGGGAGGGGGGGAGGAGGTGAAGAGGGGACGGG
AAGAGATTTACAGACGGATTGTGGCATTTGAAGGCGTGCTGAAGTGGGTG
CATCCAGTGTCGGAGGAGGCGGGAGATTTCATCACGAGGTTGGTTTGTCC
GGATCCGAGGGAGAGAATGAAGTTGGAAGACGCCCTGTGCCACCCTTGGT
TGGCGACGGAGTGAATGGACACCTGTGAGGAATGCGAGGAGGCGCAGGCG
GCCTTGCGGTGTGAGGATTGCGACTTGCTATACTGTCACCCGTGCGGCCA
GCGCTTTCACACCAAAGGCAATCGGGCAAAGCATACTCTCCACTCCCTCC
TCCCCTCCGCCGCGCCCTCCGATGGAGACGATATGGTCTATACCGGTAAC
GACGAGATGCTGCCCCCATCTGCGGCTTCCTTGTCGTCTCGACGCACCAG
CAGCAACGGCGGTAGCTTGCTGGGTCCTCCCCTACGACAGACCACCCCAC
AGTCCCAACAAAAACGTCCCCGGTCACGCATTCCTAGAAGCAATAGCAGT
AGCAGCAGCAGCAGCAGTAGCAGCAGCATGAATCCGATGATGATGATGAC
GATGACGGCCGAAGGAGGAGGAGGAGGAGCCTTCCCGCCACAACCATCAC
AGGCCGCAGCGGCAGGAGCAGCCTTAGCTCAACCACCCCCGCCTCCGGGT
GTGCTGACCGTGAACCAAAATATTATTTCCTGCAATAATACGGAAAAGAA
AAAGAGCAACAATTTTCACCCCCGTGCCTGTGGCAGCAGCATCGGTCTCA
CTGCCGATTTTAAAAAATCCACCACCACAACCACCACTACTAGCAAAGCC
GTCTGCACCTCGACCTCCTCCTGCCTCTCTCTCGCCCACCCCCAAATGAA
ATGGAGCACCAACGATTTCACCGTCGGTCGTCCTCTGGGCCGTGGGAAAT
TCGGGAACGTCTACATGGCCAAAGAAAATCGAACGTCCAAGCCTGTGGCC
CTCAAAGTCATCTTCAAGAACACTCTCACTTCCTCCAAGAGCTATAATCT
CCTCCGACGAGAAGTCGAGATTCAGATCAG back to top
|