jgi.p|Nanoce1779_2|601422, mRNA_8278 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601422
Unique NamemRNA_8278
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1248
Alignment locationscaffold_23:257182..258429 -

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Properties
Property NameValue
TranscriptId601508
TrackFilteredModels2
ProteinId601422
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:257182..258429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601422gene_8278Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601422mRNA_8278-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8278CDS_8278Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8278 ID=mRNA_8278|Name=jgi.p|Nanoce1779_2|601422|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
GTTGACGAGAAGTACTGCATATTTGTTCATCATTTTGTGACCTGTCGGTG
AGGGAAAGGGTTTTGGCGGCGCGGTGTTGTTTTGGCTGCCCGACGTAAGT
CAATTCACGTGACGTCTTCCTAACATGAATCTGTGTCTCTTCTTCTTTTC
TTTTCCAGCTCTTTGTTTTCTTCGTTGTGTCGATTTACCCCCTCACTTTC
CCTCTCACTTCACTCCTGTCTTGTCGAGCTTTTGGTCCTTCCAACTGCTT
TCCTTTCGTGTCGTCGTTTCGGTTTCTCCTCTTTCTATTTCGAGTCTCCA
TTTTCCGTCTCGCCCACATATTCAAGGGATATCATCCTTCGTGCTGCTGT
GCAACAACGAACGACCATCCCTACATTCCTTCTTATCTGAGAGAAAGGAG
GAGAACGTGGCCTTTTTTCTGTGTGCTAATGTAAAATGTCTTGTGATCAA
ACGGGATTTCAGCTTTCTCTTACTTTTATCTGTCTCCTCTCCCTTCTCAG
ACATTCATCTCTCCTTGTTTCTTGAGTGCTGTTTCCTTCGGTCGTAAATC
AAAATTTTCAAACACAAACTCGGGGAGGTGTCATATATCTCCTCGCTTTT
GTTTTCCCCAAACACGCATGCAGGTTCCTTACACTCTCTCTCACTCACTT
CCTCGCTTTCTCATTCACACGAACTATCCCACACTCGACTTGTTCAAGAC
AGAGAGGGAGGCAATCAGCCCAAGCACTCATCCCTCTTTCCTTCCTTTCC
TTCTCTTCCTCTATGTTGACGAAGTGAGGACAAACAAAGGAGCCGGCGGG
CAGGTTTTACTCTGCAACTGCTGCTGCTGCTGCTGCTGCTAAGATTACTT
TTGTACATATTATATTGCTGCTATTGTTGTTGGTATGGAAGTGCTCTTGT
TGTTGTTGTTGCTCTTTTACCGCAGCTACAGCTGCTGCTACTGCTGCTAT
AGCTGCTGCCACTGCGGTGCTGCTACTGCTGCTCCCCATCAGCCTTTCCC
CTCGATATGGCGCCTTTCTCCCTCTGCTCGTTCTCATATGGGGCTCCTTC
CCTCCCGCCCTCCTTGTCCTTCTCTCTCCGTCAAAACGTCATCGCACGAC
GACGACATTTTAATTTCTGTTCATTTATCTGCTTCTAATCTAAGAAGCGT
ATACTTTCCAGCACTCCCTCCCTCTCTCCCTCCCTCCCTCCAAACCTCCC
AACCTCCCTCTATTCCTTCGGGGCATGTTGAATCAACGTTATAGCATC
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protein sequence of jgi.p|Nanoce1779_2|601422

>mRNA_8278-protein ID=mRNA_8278-protein|Name=jgi.p|Nanoce1779_2|601422|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MNLCLFFFSFPALCFLRCVDLPPHFPSHFTPVLSSFWSFQLLSFRVVVSV
SPLSISSLHFPSRPHIQGISSFVLLCNNERPSLHSFLSERKEENVAFFLC
ANVKCLVIKRDFSFLLLLSVSSPFSDIHLSLFLECCFLRS*
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mRNA from alignment at scaffold_23:257182..258429-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8278 ID=mRNA_8278|Name=jgi.p|Nanoce1779_2|601422|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp|location=Sequence derived from alignment at scaffold_23:257182..258429- (Nannochloropsis oceanica)
GTTGACGAGAAGTACTGCATATTTGTTCATCATTTTGTGACCTGTCGGTG
AGGGAAAGGGTTTTGGCGGCGCGGTGTTGTTTTGGCTGCCCGACGTAAGT
CAATTCACGTGACGTCTTCCTAACATGAATCTGTGTCTCTTCTTCTTTTC
TTTTCCAGCTCTTTGTTTTCTTCGTTGTGTCGATTTACCCCCTCACTTTC
CCTCTCACTTCACTCCTGTCTTGTCGAGCTTTTGGTCCTTCCAACTGCTT
TCCTTTCGTGTCGTCGTTTCGGTTTCTCCTCTTTCTATTTCGAGTCTCCA
TTTTCCGTCTCGCCCACATATTCAAGGGATATCATCCTTCGTGCTGCTGT
GCAACAACGAACGACCATCCCTACATTCCTTCTTATCTGAGAGAAAGGAG
GAGAACGTGGCCTTTTTTCTGTGTGCTAATGTAAAATGTCTTGTGATCAA
ACGGGATTTCAGCTTTCTCTTACTTTTATCTGTCTCCTCTCCCTTCTCAG
ACATTCATCTCTCCTTGTTTCTTGAGTGCTGTTTCCTTCGGTCGTAAATC
AAAATTTTCAAACACAAACTCGGGGAGGTGTCATATATCTCCTCGCTTTT
GTTTTCCCCAAACACGCATGCAGGTTCCTTACACTCTCTCTCACTCACTT
CCTCGCTTTCTCATTCACACGAACTATCCCACACTCGACTTGTTCAAGAC
AGAGAGGGAGGCAATCAGCCCAAGCACTCATCCCTCTTTCCTTCCTTTCC
TTCTCTTCCTCTATGTTGACGAAGTGAGGACAAACAAAGGAGCCGGCGGG
CAGGTTTTACTCTGCAACTGCTGCTGCTGCTGCTGCTGCTAAGATTACTT
TTGTACATATTATATTGCTGCTATTGTTGTTGGTATGGAAGTGCTCTTGT
TGTTGTTGTTGCTCTTTTACCGCAGCTACAGCTGCTGCTACTGCTGCTAT
AGCTGCTGCCACTGCGGTGCTGCTACTGCTGCTCCCCATCAGCCTTTCCC
CTCGATATGGCGCCTTTCTCCCTCTGCTCGTTCTCATATGGGGCTCCTTC
CCTCCCGCCCTCCTTGTCCTTCTCTCTCCGTCAAAACGTCATCGCACGAC
GACGACATTTTAATTTCTGTTCATTTATCTGCTTCTAATCTAAGAAGCGT
ATACTTTCCAGCACTCCCTCCCTCTCTCCCTCCCTCCCTCCAAACCTCCC
AACCTCCCTCTATTCCTTCGGGGCATGTTGAATCAACGTTATAGCATC
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Coding sequence (CDS) from alignment at scaffold_23:257182..258429-

>mRNA_8278 ID=mRNA_8278|Name=jgi.p|Nanoce1779_2|601422|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_23:257182..258429- (Nannochloropsis oceanica)
ATGAATCTGTGTCTCTTCTTCTTTTCTTTTCCAGCTCTTTGTTTTCTTCG
TTGTGTCGATTTACCCCCTCACTTTCCCTCTCACTTCACTCCTGTCTTGT
CGAGCTTTTGGTCCTTCCAACTGCTTTCCTTTCGTGTCGTCGTTTCGGTT
TCTCCTCTTTCTATTTCGAGTCTCCATTTTCCGTCTCGCCCACATATTCA
AGGGATATCATCCTTCGTGCTGCTGTGCAACAACGAACGACCATCCCTAC
ATTCCTTCTTATCTGAGAGAAAGGAGGAGAACGTGGCCTTTTTTCTGTGT
GCTAATGTAAAATGTCTTGTGATCAAACGGGATTTCAGCTTTCTCTTACT
TTTATCTGTCTCCTCTCCCTTCTCAGACATTCATCTCTCCTTGTTTCTTG
AGTGCTGTTTCCTTCGGTCGTAA
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Synonyms
Publications