jgi.p|Nanoce1779_2|601419, mRNA_8277 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601419
Unique NamemRNA_8277
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1575
Alignment locationscaffold_23:255737..257311 +

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Properties
Property NameValue
TranscriptId601505
TrackFilteredModels2
ProteinId601419
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:255737..257311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601419gene_8277Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601419mRNA_8277-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8277CDS_8277Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8277 ID=mRNA_8277|Name=jgi.p|Nanoce1779_2|601419|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp
ATTGTAGGGACGGAAATAATGTCACATTACAAGACAGGGAAAATGTGCCT
GCGTTCCAACCAGGTGATTATGATGTACGTGACTTTTTGGTGTGCAACGA
TGAGGAAAGAGACCAGGAGCATGCCACAAGGGCATCGAAAACGCAAGGAA
GGTGTAATCCTCCTCCTCGGCCTCGCTCTCTTCTTCCTTGCAGTGCAATG
GTCGTCAGTCATCCCTTCTGAGCCATGTCCTTTTAGGCATCTACAAGTAT
CGGTCAATCCACCAGCCTATTTATAAAAAATTAGAATGTACGTATGTGTT
TGGACCTGGTGTGGGTGGAATGGGTTGAGGGCTTTGCTCGTGCGGCGCTC
GCTTGCTTTGAGGCGCTCTGCGCTGGGTGACGCGTGTACCATCACTTCTT
CCCTTCCACACGATCAAGGGCACTCAATCTGCCTTTTTCAACCCCACACC
TACATTCTCACACAAGACAGAATAAAGCCGGCATACTCTTGTGTCGGAAG
CGGGGCTTGGATGCGGTGATTAGACACATACACACGCCTTGGCCGGGAGG
GGGAGGAGGACTCGCCGGATATTATCTCATCATGCGGAGGCTCCTCGGCA
ACATGTGCCTGGGCAGCGGCTGATGGTGATGACATGTCTCTCTTATTTGG
GCTCGCTAAGCGTCAGTGCAGCGCTGCTTGTAGCCTAGCCAGATAGGCCG
CCGTGGGTGGGTGCGTGTGGCTTGGTTCCTTTCGCGGCTCGGCCGAGATA
GAAAGAGAACGGAGGAGTCTGGGTCGGGCGCGCCATCGCATTCCGTTCTT
GGCCCCAGTGCTCACCAGAGTAGTCGCGCGCATTTTGTGCTTTTATGAAA
GGATTCTTCCTTCAATGTGCGCGTGTGCCGTAATCACCATCATCATACCA
TATATCATTATACACGCGGCGTTGTCTCGCCTCCAGCGCCTCTTCAGTTT
GATACATATATACTTCAGTTCCCACACGGATGCACCTTTCTCTCCCCACC
CTCTCAACAACACCGCTTCACAGGCCTTCACCATTTCACTACCCCACGTG
GAGTGTTTGGATCGCGTTTACGTCCTCCTCACCACTTTTTTCTTCTTTCT
CTTCGCAAGAGAAGTTGTAGCAGCAGCAGCAGCGACAACAACAGCAGCAG
CCTTTTTCCCTAAATCATCATCATCTTCTTCTTCTTCTACCCCTTCAAAG
CGCAAGACATTACAAAAATGAGCAGCAAGGTGAAGAAAGTGATGACCCAG
CCCATCTCGGTCATTTTTCGGATGCTACAAGGGAAGCAGCGACTGCAAGT
GTGGCTCTACGAGCAGTCCTCTGTGAGGATGGAAGGGAAGTTGATTGGCT
TTGACGAGTACATGAACGTAGTGTTGGACGAAGCGGAGGAGGTGGATAGC
AAGAAAGGGACACGTAAGGCCTTGGGAAGGATTTTGTTGAAGGGTGATGC
TATAACGTTGATTCAACATGCCCCGAAGGAATAGAGGGAGGTTGGGAGGT
TTGGAGGGAGGGAGGGAGAGAGGGAGGGAGTGCTGGAAAGTATACGCTTC
TTAGATTAGAAGCAGATAAATGAAC
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protein sequence of jgi.p|Nanoce1779_2|601419

>mRNA_8277-protein ID=mRNA_8277-protein|Name=jgi.p|Nanoce1779_2|601419|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMN
VVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKE*
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mRNA from alignment at scaffold_23:255737..257311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8277 ID=mRNA_8277|Name=jgi.p|Nanoce1779_2|601419|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp|location=Sequence derived from alignment at scaffold_23:255737..257311+ (Nannochloropsis oceanica)
ATTGTAGGGACGGAAATAATGTCACATTACAAGACAGGGAAAATGTGCCT
GCGTTCCAACCAGGTGATTATGATGTACGTGACTTTTTGGTGTGCAACGA
TGAGGAAAGAGACCAGGAGCATGCCACAAGGGCATCGAAAACGCAAGGAA
GGTGTAATCCTCCTCCTCGGCCTCGCTCTCTTCTTCCTTGCAGTGCAATG
GTCGTCAGTCATCCCTTCTGAGCCATGTCCTTTTAGGCATCTACAAGTAT
CGGTCAATCCACCAGCCTATTTATAAAAAATTAGAATGTACGTATGTGTT
TGGACCTGGTGTGGGTGGAATGGGTTGAGGGCTTTGCTCGTGCGGCGCTC
GCTTGCTTTGAGGCGCTCTGCGCTGGGTGACGCGTGTACCATCACTTCTT
CCCTTCCACACGATCAAGGGCACTCAATCTGCCTTTTTCAACCCCACACC
TACATTCTCACACAAGACAGAATAAAGCCGGCATACTCTTGTGTCGGAAG
CGGGGCTTGGATGCGGTGATTAGACACATACACACGCCTTGGCCGGGAGG
GGGAGGAGGACTCGCCGGATATTATCTCATCATGCGGAGGCTCCTCGGCA
ACATGTGCCTGGGCAGCGGCTGATGGTGATGACATGTCTCTCTTATTTGG
GCTCGCTAAGCGTCAGTGCAGCGCTGCTTGTAGCCTAGCCAGATAGGCCG
CCGTGGGTGGGTGCGTGTGGCTTGGTTCCTTTCGCGGCTCGGCCGAGATA
GAAAGAGAACGGAGGAGTCTGGGTCGGGCGCGCCATCGCATTCCGTTCTT
GGCCCCAGTGCTCACCAGAGTAGTCGCGCGCATTTTGTGCTTTTATGAAA
GGATTCTTCCTTCAATGTGCGCGTGTGCCGTAATCACCATCATCATACCA
TATATCATTATACACGCGGCGTTGTCTCGCCTCCAGCGCCTCTTCAGTTT
GATACATATATACTTCAGTTCCCACACGGATGCACCTTTCTCTCCCCACC
CTCTCAACAACACCGCTTCACAGGCCTTCACCATTTCACTACCCCACGTG
GAGTGTTTGGATCGCGTTTACGTCCTCCTCACCACTTTTTTCTTCTTTCT
CTTCGCAAGAGAAGTTGTAGCAGCAGCAGCAGCGACAACAACAGCAGCAG
CCTTTTTCCCTAAATCATCATCATCTTCTTCTTCTTCTACCCCTTCAAAG
CGCAAGACATTACAAAAATGAGCAGCAAGGTGAAGAAAGTGATGACCCAG
CCCATCTCGGTCATTTTTCGGATGCTACAAGGGAAGCAGCGACTGCAAGT
GTGGCTCTACGAGCAGTCCTCTGTGAGGATGGAAGGGAAGTTGATTGGCT
TTGACGAGTACATGAACGTAGTGTTGGACGAAGCGGAGGAGGTGGATAGC
AAGAAAGGGACACGTAAGGCCTTGGGAAGGATTTTGTTGAAGGGTGATGC
TATAACGTTGATTCAACATGCCCCGAAGGAATAGAGGGAGGTTGGGAGGT
TTGGAGGGAGGGAGGGAGAGAGGGAGGGAGTGCTGGAAAGTATACGCTTC
TTAGATTAGAAGCAGATAAATGAAC
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Coding sequence (CDS) from alignment at scaffold_23:255737..257311+

>mRNA_8277 ID=mRNA_8277|Name=jgi.p|Nanoce1779_2|601419|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_23:255737..257311+ (Nannochloropsis oceanica)
ATGAGCAGCAAGGTGAAGAAAGTGATGACCCAGCCCATCTCGGTCATTTT
TCGGATGCTACAAGGGAAGCAGCGACTGCAAGTGTGGCTCTACGAGCAGT
CCTCTGTGAGGATGGAAGGGAAGTTGATTGGCTTTGACGAGTACATGAAC
GTAGTGTTGGACGAAGCGGAGGAGGTGGATAGCAAGAAAGGGACACGTAA
GGCCTTGGGAAGGATTTTGTTGAAGGGTGATGCTATAACGTTGATTCAAC
ATGCCCCGAAGGAATAG
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Synonyms
Publications