jgi.p|Nanoce1779_2|559323, mRNA_8276 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|559323
Unique NamemRNA_8276
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1431
Alignment locationscaffold_23:253562..255097 -

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Properties
Property NameValue
TranscriptId559409
TrackFilteredModels2
ProteinId559323
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:253562..255097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559323gene_8276Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559323mRNA_8276-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8276CDS_8276Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8276 ID=mRNA_8276|Name=jgi.p|Nanoce1779_2|559323|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp
GGTTATGCCTGCGGGTAATGGGGAGAGAGGAGGGGGAGGGGGGAAACGCA
GCGCAGATGAAGCGTTCAGTGCTGCTGCCACAGGAGGAGGAGGGTGGGGT
GGGGATGCAATGTCAGTTGCGAGCAGCACGACCGATGGCTGGGATGAGGC
AAGCCGAAGCTCCACTAAATCTACAACGGCTACTGCTGGTGGTCGCCCCC
GCAAGACCCCCACCCGTCCCTCGAGCAGCAGCAGCAGTAGCAATAGTAGC
ACTGCCACGCCTGGGAGCGCTGATAAAAATCTGAAGGGCCTGCGTCATTT
CTCCCTGAAAGTCTGTCGGAAGGTAGAGGAGAAGGGGACGACGAATTACA
ACGAGGTGGCGGATGAGCTGGTCGCCGAAGTATTGAATAGTAAATGTGAT
CCTGGCACGGGCTCGGTGCCTGTGGAGGGGTACGATGAAAAAAATATACG
CCGGCGGGTCTATGACGCCCTGAACGTGTTGATGGCCATGGACATCATCA
GCAAGGAGAAGAAGGAGATTCGGTGGAGGGGGTTGCCCAGCAGCTTGGGC
GAGGGAGGGGATGGTGGAGGAATGGGGGGGAGGAGGCGGTTAGGGAGGGG
GGAGCCGGAGGAGGAGATGGAGAGCTTGAGAAGGGAGAAGCGAAGGGTGG
AGGCGGCTGTGGGAAAGAAGAAGGAGGTCTTGCAAGAGCTGATTCGGCAA
CGGGTGGCTTTCCAGAAGCTCGTCAAGCGGAATGGAGATAGGGAAGCGGA
GCTTGCCGCTACAGCCACCTCTACCGCAGCAGCCGCAGCAGCCGCAAACG
CCATTCCTTTGCCGTTTATCATCATCAACACGCACATGGTGACTGTCATC
CAGTGTGAGATGACTGAGGATCGCAGTGATGTGTTTTTCAACTTTTCGAA
CCAATTTGAGTTGAAGGATGACAATGATATTTTGAAGCGGATGAGATTGC
AGCAGGCAAGTGGGGAGGAGGTGGAGAGCTTTGTCCCAGCAACTGTACGA
AAGTATGTACCAGAGAGCATATATGGATGAGGAGGGAGGGAGGGAGAAAG
AGATGGAGGGGAAGAGGAAGGAGATTAGACGAGGTCAACGTGGAATGTAT
CGTACAAAGAGAAATAGAGTATTTATAAGCGCAAGTGACGACGGATAATT
TGCAGAAAAAGAAGAGAGTGAAAGACAGCGGAAGCAATGAGAAGACGATG
AAGTAGAACGAGAGGCAGTACAGAGAGACAAAGAGAGGTTAGACCGGCAC
ACCCATCTAAGCCACGACAGGTCAAAAGAAAACTGTGACAGTAAGAGTAG
ACTTCATTTAAGAAGTTTGACTACAATACGAAGGCGGGGAGAGAGATTAA
AAAATGTATAAGTGGAAGAAGAGAGTGACAGCAACAAAAGTAAAGAGCAG
AAAGTAAAGGAACGACGCTAGTATTGATCGG
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protein sequence of jgi.p|Nanoce1779_2|559323

>mRNA_8276-protein ID=mRNA_8276-protein|Name=jgi.p|Nanoce1779_2|559323|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MPAGNGERGGGGGKRSADEAFSAAATGGGGWGGDAMSVASSTTDGWDEAS
RSSTKSTTATAGGRPRKTPTRPSSSSSSSNSSTATPGSADKNLKGLRHFS
LKVCRKVEEKGTTNYNEVADELVAEVLNSKCDPGTGSVPVEGYDEKNIRR
RVYDALNVLMAMDIISKEKKEIRWRGLPSSLGEGGDGGGMGGRRRLGRGE
PEEEMESLRREKRRVEAAVGKKKEVLQELIRQRVAFQKLVKRNGDREAEL
AATATSTAAAAAAANAIPLPFIIINTHMVTVIQCEMTEDRSDVFFNFSNQ
FELKDDNDILKRMRLQQASGEEVESFVPATVRKYVPESIYG*
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mRNA from alignment at scaffold_23:253562..255097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8276 ID=mRNA_8276|Name=jgi.p|Nanoce1779_2|559323|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp|location=Sequence derived from alignment at scaffold_23:253562..255097- (Nannochloropsis oceanica)
GGTTATGCCTGCGGGTAATGGGGAGAGAGGAGGGGGAGGGGGGAAACGCA
GCGCAGATGAAGCGTTCAGTGCTGCTGCCACAGGAGGAGGAGGGTGGGGT
GGGGATGCAATGTCAGTTGCGAGCAGCACGACCGATGGCTGGGATGAGGC
AAGCCGAAGCTCCACTAAATCTACAACGGCTACTGCTGGTGGTCGCCCCC
GCAAGACCCCCACCCGTCCCTCGAGCAGCAGCAGCAGTAGCAATAGTAGC
ACTGCCACGCCTGGGAGCGCTGATAAAAATCTGAAGGGCCTGCGTCATTT
CTCCCTGAAAGTCTGTCGGAAGGTAGAGGAGAAGGGGACGACGAATTACA
ACGAGGTGGCGGATGAGCTGGTCGCCGAAGTATTGAATAGTAAATGTGAT
CCTGGCACGGGCTCGGTGCCTGTGGAGGGGTACGATGAAAAAAATATACG
CCGGCGGGTCTATGACGCCCTGAACGTGTTGATGGCCATGGACATCATCA
GCAAGGAGAAGAAGGAGATTCGGTGGAGGGGGTTGCCCAGCAGCTTGGGC
GAGGGAGGGGATGGTGGAGGAATGGGGGGGAGGAGGCGGTTAGGGAGGGG
GGAGCCGGAGGAGGAGATGGAGAGCTTGAGAAGGGAGAAGCGAAGGGTGG
AGGCGGCTGTGGGAAAGAAGAAGGAGGTCTTGCAAGAGCTGATTCGGCAA
CGGGTGGCTTTCCAGAAGCTCGTCAAGCGGAATGGAGATAGGGAAGCGGA
GCTTGCCGCTACAGCCACCTCTACCGCAGCAGCCGCAGCAGCCGCAAACG
CCGTCTCGTCCTCCCGTTCATCTGCTGGTGCTACTGCTGCGGCGGCGACG
GCAGCAGCGGCAGCAGCAGAGGCGGCTGCTGCGATAGAGAATGAGGAGCA
GCGCAAGATTCCTTTGCCGTTTATCATCATCAACACGCACATGGTGACTG
TCATCCAGTGTGAGATGACTGAGGATCGCAGTGATGTGTTTTTCAACTTT
TCGAACCAATTTGAGTTGAAGGATGACAATGATATTTTGAAGCGGATGAG
ATTGCAGCAGGCAAGTGGGGAGGAGGTGGAGAGCTTTGTCCCAGCAACTG
TACGAAAGTATGTACCAGAGAGCATATATGGATGAGGAGGGAGGGAGGGA
GAAAGAGATGGAGGGGAAGAGGAAGGAGATTAGACGAGGTCAACGTGGAA
TGTATCGTACAAAGAGAAATAGAGTATTTATAAGCGCAAGTGACGACGGA
TAATTTGCAGAAAAAGAAGAGAGTGAAAGACAGCGGAAGCAATGAGAAGA
CGATGAAGTAGAACGAGAGGCAGTACAGAGAGACAAAGAGAGGTTAGACC
GGCACACCCATCTAAGCCACGACAGGTCAAAAGAAAACTGTGACAGTAAG
AGTAGACTTCATTTAAGAAGTTTGACTACAATACGAAGGCGGGGAGAGAG
ATTAAAAAATGTATAAGTGGAAGAAGAGAGTGACAGCAACAAAAGTAAAG
AGCAGAAAGTAAAGGAACGACGCTAGTATTGATCGG
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Coding sequence (CDS) from alignment at scaffold_23:253562..255097-

>mRNA_8276 ID=mRNA_8276|Name=jgi.p|Nanoce1779_2|559323|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_23:253562..255097- (Nannochloropsis oceanica)
ATTCCTTTGCCGTTTATCATCATCAACACGCACATGGTGACTGTCATCCA
GTGTGAGATGACTGAGGATCGCAGTGATGTGTTTTTCAACTTTTCGAACC
AATTTGAGTTGAAGGATGACAATGATATTTTGAAGCGGATGAGATTGCAG
CAGGCAAGTGGGGAGGAGGTGGAGAGCTTTGTCCCAGCAACTGTACGAAA
GTATGTACCAGAGAGCATATATGGATGAATGCCTGCGGGTAATGGGGAGA
GAGGAGGGGGAGGGGGGAAACGCAGCGCAGATGAAGCGTTCAGTGCTGCT
GCCACAGGAGGAGGAGGGTGGGGTGGGGATGCAATGTCAGTTGCGAGCAG
CACGACCGATGGCTGGGATGAGGCAAGCCGAAGCTCCACTAAATCTACAA
CGGCTACTGCTGGTGGTCGCCCCCGCAAGACCCCCACCCGTCCCTCGAGC
AGCAGCAGCAGTAGCAATAGTAGCACTGCCACGCCTGGGAGCGCTGATAA
AAATCTGAAGGGCCTGCGTCATTTCTCCCTGAAAGTCTGTCGGAAGGTAG
AGGAGAAGGGGACGACGAATTACAACGAGGTGGCGGATGAGCTGGTCGCC
GAAGTATTGAATAGTAAATGTGATCCTGGCACGGGCTCGGTGCCTGTGGA
GGGGTACGATGAAAAAAATATACGCCGGCGGGTCTATGACGCCCTGAACG
TGTTGATGGCCATGGACATCATCAGCAAGGAGAAGAAGGAGATTCGGTGG
AGGGGGTTGCCCAGCAGCTTGGGCGAGGGAGGGGATGGTGGAGGAATGGG
GGGGAGGAGGCGGTTAGGGAGGGGGGAGCCGGAGGAGGAGATGGAGAGCT
TGAGAAGGGAGAAGCGAAGGGTGGAGGCGGCTGTGGGAAAGAAGAAGGAG
GTCTTGCAAGAGCTGATTCGGCAACGGGTGGCTTTCCAGAAGCTCGTCAA
GCGGAATGGAGATAGGGAAGCGGAGCTTGCCGCTACAGCCACCTCTACCG
CAGCAGCCGCAGCAGCCGCAAACGCCATTCCTTTGCCGTTTATCATCATC
AACACGCACATGGTGACTGTCATCCAGTGTGAGATGACTGAGGATCGCAG
TGATGTGTTTTTCAACTTTTCGAACCAATTTGAGTTGAAGGATGACAATG
ATATTTTGAAGCGGATGAGATTGCAGCAGGCAAGTGGGGAGGAGGTGGAG
AGCTTTGTCCCAGCAACTGTACGAAAGTATGTACCAGAGAGCATATATGG
ATGAATGCCTGCGGGTAATGGGGAGAGAGGAGGGGGAGGGGGGAAACGCA
GCGCAGATGAAGCGTTCAGTGCTGCTGCCACAGGAGGAGGAGGGTGGGGT
GGGGATGCAATGTCAGTTGCGAGCAGCACGACCGATGGCTGGGATGAGGC
AAGCCGAAGCTCCACTAAATCTACAACGGCTACTGCTGGTGGTCGCCCCC
GCAAGACCCCCACCCGTCCCTCGAGCAGCAGCAGCAGTAGCAATAGTAGC
ACTGCCACGCCTGGGAGCGCTGATAAAAATCTGAAGGGCCTGCGTCATTT
CTCCCTGAAAGTCTGTCGGAAGGTAGAGGAGAAGGGGACGACGAATTACA
ACGAGGTGGCGGATGAGCTGGTCGCCGAAGTATTGAATAGTAAATGTGAT
CCTGGCACGGGCTCGGTGCCTGTGGAGGGGTACGATGAAAAAAATATACG
CCGGCGGGTCTATGACGCCCTGAACGTGTTGATGGCCATGGACATCATCA
GCAAGGAGAAGAAGGAGATTCGGTGGAGGGGGTTGCCCAGCAGCTTGGGC
GAGGGAGGGGATGGTGGAGGAATGGGGGGGAGGAGGCGGTTAGGGAGGGG
GGAGCCGGAGGAGGAGATGGAGAGCTTGAGAAGGGAGAAGCGAAGGGTGG
AGGCGGCTGTGGGAAAGAAGAAGGAGGTCTTGCAAGAGCTGATTCGGCAA
CGGGTGGCTTTCCAGAAGCTCGTCAAGCGGAATGGAGATAGGGAAGCGGA
GCTTGCCGCTACAGCCACCTCTACCGCAGCAGCCGCAGCAGCCGCAAACG
CC
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Synonyms
Publications