jgi.p|Nanoce1779_2|188440, mRNA_8275 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|188440
Unique Name	mRNA_8275
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	987
Alignment location	scaffold_23:252510..253496 -

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Properties


Property Name	Value
TranscriptId	188526
Track	FilteredModels2
ProteinId	188440

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:252510..253496 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|188440	gene_8275	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|188440	mRNA_8275-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8275	CDS_8275	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:252510..253496-
coding sequence from alignment at scaffold_23:252510..253496-

mRNA sequence

>mRNA_8275 ID=mRNA_8275|Name=jgi.p|Nanoce1779_2|188440|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
TGCATCTTTTTCGCTGTGGTGTGGGTATAGGTGTGAGCCTTACTTTTTTA
CAGAAAGGATGGACGTCCTGAGTCGTGATTGAATAGAAGCAGCCCATCTA
CTACGCCACCATTTCTCCTCATACTAAGACCTAGTCGAGGCGACAAAATT
TTCATACAAAAATTTATTTCACAGGGCGAGCCTTGACTGGGCGCGGCGCT
GGCAGAGCTTGCGGAAAATACTCAGAAAGGCAATGGGGTTGAAGAATTCG
TGCAAACAAAGCAATGTAGAGAAAACCAGGAGGATGAATGTGCTTATTGA
GTGGGCGGAAATGTACACATGCAGCAGTAGGGGCACCACACGCACGAATA
GCCCTTGGAATTGAGAGACGAGAAGGAGGAAGCCAACGACTTACCGATGG
ACGACGCACTACTAAGACTGAACCAGCTAGAGTGATATATAGAAAGAATA
GATCCAGAAAGCAAAACACAAGCTCAATGAACCCAAACACCTTCGCGCGT
GTCCATCTCTTAAATCTCCTTACTTTCTTTTTCTCTCTTCTTTTTCCAAG
CAGGGTCTCTAAGGGCTTTATATTTGGAAATTTCTTTTATCGTTTCGTGA
CACAACATTTTTGCAATATCTTTCTTCTTTTCTCTTTTCCAGCTTCATGC
GTAATGACAGGGGTGTGCGTGTGCTTGATGGTCGTTTCATCTGTCTCTCT
TCCTCGAGGTTATCTGTGTCAGCCCTTTCTTTTCCCACTCAAGCGTGAGA
GCGTGCACTTGCAGGTGATCTTCTTGCCATTCAACTTAGCCTGGCTCGTT
TGCTCCCTCACATCGTCTTGTGTGACTGCATCATGACACCTATTAGAGCG
CCTTAAGGTTCGAATTTCCCATAACACACAATAAGCGCTCCGCGACACTG
CAAACACACCAACATATGCCTAATCCCCACAAAATTGTCGACAATGAATA
ATTTAAATGTGTAAGAATGATTTTATAACTATTTTTA

protein sequence of jgi.p|Nanoce1779_2|188440

>mRNA_8275-protein ID=mRNA_8275-protein|Name=jgi.p|Nanoce1779_2|188440|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MCLLSGRKCTHAAVGAPHARIALGIERREGGSQRLTDGRRTTKTEPARVI
YRKNRSRKQNTSSMNPNTFARVHLLNLLTFFFSLLFPSRVSKGFIFGNFF
YRFVTQHFCNIFLLFSFPASCVMTGVCVCLMVVSSVSLPRGYLCQPFLFP
LKRESVHLQVIFLPFNLAWLVCSLTSSCVTAS*

mRNA from alignment at scaffold_23:252510..253496-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8275 ID=mRNA_8275|Name=jgi.p|Nanoce1779_2|188440|organism=Nannochloropsis oceanica|type=mRNA|length=987bp|location=Sequence derived from alignment at scaffold_23:252510..253496- (Nannochloropsis oceanica)
TGCATCTTTTTCGCTGTGGTGTGGGTATAGGTGTGAGCCTTACTTTTTTA
CAGAAAGGATGGACGTCCTGAGTCGTGATTGAATAGAAGCAGCCCATCTA
CTACGCCACCATTTCTCCTCATACTAAGACCTAGTCGAGGCGACAAAATT
TTCATACAAAAATTTATTTCACAGGGCGAGCCTTGACTGGGCGCGGCGCT
GGCAGAGCTTGCGGAAAATACTCAGAAAGGCAATGGGGTTGAAGAATTCG
TGCAAACAAAGCAATGTAGAGAAAACCAGGAGGATGAATGTGCTTATTGA
GTGGGCGGAAATGTACACATGCAGCAGTAGGGGCACCACACGCACGAATA
GCCCTTGGAATTGAGAGACGAGAAGGAGGAAGCCAACGACTTACCGATGG
ACGACGCACTACTAAGACTGAACCAGCTAGAGTGATATATAGAAAGAATA
GATCCAGAAAGCAAAACACAAGCTCAATGAACCCAAACACCTTCGCGCGT
GTCCATCTCTTAAATCTCCTTACTTTCTTTTTCTCTCTTCTTTTTCCAAG
CAGGGTCTCTAAGGGCTTTATATTTGGAAATTTCTTTTATCGTTTCGTGA
CACAACATTTTTGCAATATCTTTCTTCTTTTCTCTTTTCCAGCTTCATGC
GTAATGACAGGGGTGTGCGTGTGCTTGATGGTCGTTTCATCTGTCTCTCT
TCCTCGAGGTTATCTGTGTCAGCCCTTTCTTTTCCCACTCAAGCGTGAGA
GCGTGCACTTGCAGGTGATCTTCTTGCCATTCAACTTAGCCTGGCTCGTT
TGCTCCCTCACATCGTCTTGTGTGACTGCATCATGACACCTATTAGAGCG
CCTTAAGGTTCGAATTTCCCATAACACACAATAAGCGCTCCGCGACACTG
CAAACACACCAACATATGCCTAATCCCCACAAAATTGTCGACAATGAATA
ATTTAAATGTGTAAGAATGATTTTATAACTATTTTTA

Coding sequence (CDS) from alignment at scaffold_23:252510..253496-

>mRNA_8275 ID=mRNA_8275|Name=jgi.p|Nanoce1779_2|188440|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_23:252510..253496- (Nannochloropsis oceanica)
ATGTGCTTATTGAGTGGGCGGAAATGTACACATGCAGCAGTAGGGGCACC
ACACGCACGAATAGCCCTTGGAATTGAGAGACGAGAAGGAGGAAGCCAAC
GACTTACCGATGGACGACGCACTACTAAGACTGAACCAGCTAGAGTGATA
TATAGAAAGAATAGATCCAGAAAGCAAAACACAAGCTCAATGAACCCAAA
CACCTTCGCGCGTGTCCATCTCTTAAATCTCCTTACTTTCTTTTTCTCTC
TTCTTTTTCCAAGCAGGGTCTCTAAGGGCTTTATATTTGGAAATTTCTTT
TATCGTTTCGTGACACAACATTTTTGCAATATCTTTCTTCTTTTCTCTTT
TCCAGCTTCATGCGTAATGACAGGGGTGTGCGTGTGCTTGATGGTCGTTT
CATCTGTCTCTCTTCCTCGAGGTTATCTGTGTCAGCCCTTTCTTTTCCCA
CTCAAGCGTGAGAGCGTGCACTTGCAGGTGATCTTCTTGCCATTCAACTT
AGCCTGGCTCGTTTGCTCCCTCACATCGTCTTGTGTGACTGCATCATGA

Synonyms

Publications