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Properties
| Property Name | Value |
|---|
| TranscriptId | 559401 |
| Track | FilteredModels2 |
| ProteinId | 559315 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_23 | supercontig | scaffold_23:245818..248618 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8273 ID=mRNA_8273|Name=jgi.p|Nanoce1779_2|559315|organism=Nannochloropsis oceanica|type=mRNA|length=2679bp
ACAGGTAATCCAAAGTTCAAAGCCCTGCAGCCACTGCGGATAAACTAACC
TGCCTTGGCCTGCGCCCAAGTGAACAAGAACCTCCCCCTATAACATAAAC
TCAGCCCGGGGCACGCATGAGCTCCTTGGCCTCGTCATCGAACCTTCTAC
TCCTCCCTCACCGGCTTCATCGATTAATAGCACCATGGTATAAAAACGAT
CGCCATCGCCTCCTCTCCCCATCCTCCTCCTCCTCCTTTTCCTCCTCCTC
CTCTTTTTCTTCATCTTCTTCTTCCTCATCTCCTCGTCCAAGCGTGCAGC
GTCATGGTCTTTGGGTCAATAATGAGGACCGCCCAGCCTTAAATGGGTTG
ACACACACCCTGCAGAGCCCCGCGACCCGCCAGGAACTGGGTCATGTTGT
CGATATTGCCGAGGCCCAAGACATCGACCTTGCCGTCGCTGCCGCTGAAG
CGAGCTTTCTGTCCGGCACTTGGTCTCGACATACAGACGCGCGCGGTCGG
AGCCAAGTCCTCCTTAGAATGGCCCAGGGGCTACAGAAACGCTTACCAGA
GCTCGCTCGCTTGGAGAGCCTGCAAACAGGGCGACCTTTGAGGGAGATGG
AAGCACAGCTCATGCGGTTGCCGGAATGGTTTGAATATTTCGCCGCGCTG
ATCCGAACCGAAGAAGGCGGCCTTCCTGTCTTTCCTGGCTCGTATATAAA
CTACGTTCAACGTATTCCTCTTGGCATCTGTGCCCTTCTCACCCCATGGA
ACCATCCCTTGTTAATAGCCGTCAAAAAGCTCGCGCCTGCCCTTGCTGCC
GGGAACAGCGTGGTCCTAAAGCCTCCAGAACTTGCTCCACTGGCCGTTTT
AGCCCTGGGAGAGATAGGTAAAGAGGCAGGCTTGCCTTCCGGAGTTCTTA
ATATAACCCCAGGACAAGGGAAAGTCGCAGGGAGGGCTCTTGCCGCCCAT
CCGCGTGTGAGGAAAGTGGATTTGACCGGTGGAACGGCGACGGGGCGCAT
GACTGCGTGCGTGGCGGGGAAGAATCTCGCCAGTGTGGTTGCGGAGCTTG
GAGGGAAGGCACCGATGCTTGTATTTGGTGATGTGGATGTGAAGGACGCC
GTGGCTATGTGTGCGTTTGCGGCATTTGTCGCGTCGGGGCAGACATGCGT
GTCGGGGAGTCGCTTATTGGTTCACGAGTCGATTTATGAAGATTTTTCGA
AGAGGTTTGTCGCCAAAGCGCAGGGTTTGAAATTAGGCGATCCGCTGGAG
AGGAGCACGGATATGGGCCCCTTGATTTCACAGATGCAGTGGGAGAGAGT
GCATGGTTTTGTGTCTCGCGCACAGGAGGAAGGGGCAAAGGTTCTCTGCG
GGGGAGGAAAGCCTTCCTTGACATCAAGAGGAGGGGGGCCTTCCCTCGCT
CCGTACCTAGCGGAAGGTTTCTTCTATTCGCCTACTGTGATAAGCAACGT
GCACCCAGGGATGGAGATCATGCAAGAAGAAGTGTTCGGTCCTGTTGTAT
GTCTCTTGCCCTTCAAGGATGAGGCGCACGCGTTAGAACTTGCCAACAAT
TCGGTCTATGGCTTGGGCGCGAGCGTCCATACCCGGTGCAGTAAGAGAGG
GCACCGTGTCGCTTCGCAGTTGCAGGCGGGGATAGTTTGGATCAACGACC
ACCATCGCAATTCGCCCTCATCGCCCTGGGGCGGGGTTACGGCAGCGAGT
GGGTTGGGAAGGGAGAATGGGAGGGAGGGACTGCGGGAGTACACGCAGGA
GAAGAGCGTGGTTGTCGGGTATGGCGAAGAGAGGTTCGATTGGTTCTCGA
AAAATAAGGGGTTAAGGTATGGCTAAGAGGGGGGTAAGAAGGGCTAACCT
GAGCAAAGATTGAGGATAATGCGGATCAATAGAGAAGAACGAGAAGAGTG
ATGACGGGAAAAAGAACATCACAGCTAAATCACGCAAGGAATTATATATA
AGTATATCTCTTCCTCCATGAGTCCTTGGGCAAAGTATGAAATCTTCGAA
TCATGAGCAATGACGACGTCTTGTGATCCAGTTCTTTTCTTAATTCAAAT
CGTCATCATTCTCTTCGTTGCCACCAGAGTATAACTGCCACCATCAGCAA
TAGCAGCCCTGATCCCACCATACCTAATGTCAGGAGAGTAGCCTTTGAGA
GAGTGGAGGGAGAAGAGCGCAAGGCTTTCCTTTTAGTAGTGGCTGTGTTT
GTAGCCGTTGCTCTTGTAGTCGTTGTCATTGTTGCGGCTGCCGTCGGTCT
CTTTCTTACCACTGGTGCTGCTACTGGTGCTGCTGGTACTGCTGCTGCTT
TGGCTGCTGGCTTCGCTGCCGTTGTCTTGTCCGCATCCAAGTTATTATTT
ACCCGCAAGAGCACTGACGGTGCCAAGGCAGGCGCTTGTTGTTCGAGGAC
TAGCAGTCTAAAGGGCGAGGAAGAGAAGGAGGAGGAAGTAGAAGAGACCC
CACCTACCGGTACCGCCACTGCTCCTGCTTTTTCTCCTTCCGCTTTCGCC
ATTATATTTCGTAACCGAATCCATGCTTCTTCCTGCCCTTCCTTCCCCCC
TTCCTTTAGAGAGCCAGGCGAGACGTAATCAACCAGCGGGACCGTCGAGG
ACGAGGAGAAGGAGGAGGAGGGGGGAGAAGACAGCAACACCCGCCGTGGG
AACTGTACCATTCCGCCACTCCACCCATC back to topprotein sequence of jgi.p|Nanoce1779_2|559315 >mRNA_8273-protein ID=mRNA_8273-protein|Name=jgi.p|Nanoce1779_2|559315|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MSSLASSSNLLLLPHRLHRLIAPWYKNDRHRLLSPSSSSSFSSSSSFSSS
SSSSSPRPSVQRHGLWVNNEDRPALNGLTHTLQSPATRQELGHVVDIAEA
QDIDLAVAAAEASFLSGTWSRHTDARGRSQVLLRMAQGLQKRLPELARLE
SLQTGRPLREMEAQLMRLPEWFEYFAALIRTEEGGLPVFPGSYINYVQRI
PLGICALLTPWNHPLLIAVKKLAPALAAGNSVVLKPPELAPLAVLALGEI
GKEAGLPSGVLNITPGQGKVAGRALAAHPRVRKVDLTGGTATGRMTACVA
GKNLASVVAELGGKAPMLVFGDVDVKDAVAMCAFAAFVASGQTCVSGSRL
LVHESIYEDFSKRFVAKAQGLKLGDPLERSTDMGPLISQMQWERVHGFVS
RAQEEGAKVLCGGGKPSLTSRGGGPSLAPYLAEGFFYSPTVISNVHPGME
IMQEEVFGPVVCLLPFKDEAHALELANNSVYGLGASVHTRCSKRGHRVAS
QLQAGIVWINDHHRNSPSSPWGGVTAASGLGRENGREGLREYTQEKSVVV
GYGEERFDWFSKNKGLRYG* back to topmRNA from alignment at scaffold_23:245818..248618- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8273 ID=mRNA_8273|Name=jgi.p|Nanoce1779_2|559315|organism=Nannochloropsis oceanica|type=mRNA|length=2801bp|location=Sequence derived from alignment at scaffold_23:245818..248618- (Nannochloropsis oceanica)
ACAGGTAATCCAAAGTTCAAAGCCCTGCAGCCACTGCGGATAAACTAACC
TGCCTTGGCCTGCGCCCAAGTGAACAAGAACCTCCCCCTATAACATAAAC
TCAGCCCGGGGCACGCATGAGCTCCTTGGCCTCGTCATCGAACCTTCTAC
TCCTCCCTCACCGGCTTCATCGATTAATAGCACCATGGTATAAAAACGAT
CGCCATCGCCTCCTCTCCCCATCCTCCTCCTCCTCCTTTTCCTCCTCCTC
CTCTTTTTCTTCATCTTCTTCTTCCTCATCTCCTCGTCCAAGCGTGCAGC
GTCATGGTCTTTGGGTCAATAATGAGGACCGCCCAGCCTTAAATGGGTTG
ACACACACCCTGCAGAGCCCCGCGACCCGCCAGGAACTGGGTCATGTTGT
CGATATTGCCGAGGGTGCGTCCGTTTTCAATACTCTACCTCGCTTTGTAT
TTTTGGATATTTTCTCTGTTTGTTAATTATTTCTCCCTCTTATGCTGTTG
TCATGTCTCATGTCTTCCATTCCCCCCTTCCATCAGCCCAAGACATCGAC
CTTGCCGTCGCTGCCGCTGAAGCGAGCTTTCTGTCCGGCACTTGGTCTCG
ACATACAGACGCGCGCGGTCGGAGCCAAGTCCTCCTTAGAATGGCCCAGG
GGCTACAGAAACGCTTACCAGAGCTCGCTCGCTTGGAGAGCCTGCAAACA
GGGCGACCTTTGAGGGAGATGGAAGCACAGCTCATGCGGTTGCCGGAATG
GTTTGAATATTTCGCCGCGCTGATCCGAACCGAAGAAGGCGGCCTTCCTG
TCTTTCCTGGCTCGTATATAAACTACGTTCAACGTATTCCTCTTGGCATC
TGTGCCCTTCTCACCCCATGGAACCATCCCTTGTTAATAGCCGTCAAAAA
GCTCGCGCCTGCCCTTGCTGCCGGGAACAGCGTGGTCCTAAAGCCTCCAG
AACTTGCTCCACTGGCCGTTTTAGCCCTGGGAGAGATAGGTAAAGAGGCA
GGCTTGCCTTCCGGAGTTCTTAATATAACCCCAGGACAAGGGAAAGTCGC
AGGGAGGGCTCTTGCCGCCCATCCGCGTGTGAGGAAAGTGGATTTGACCG
GTGGAACGGCGACGGGGCGCATGACTGCGTGCGTGGCGGGGAAGAATCTC
GCCAGTGTGGTTGCGGAGCTTGGAGGGAAGGCACCGATGCTTGTATTTGG
TGATGTGGATGTGAAGGACGCCGTGGCTATGTGTGCGTTTGCGGCATTTG
TCGCGTCGGGGCAGACATGCGTGTCGGGGAGTCGCTTATTGGTTCACGAG
TCGATTTATGAAGATTTTTCGAAGAGGTTTGTCGCCAAAGCGCAGGGTTT
GAAATTAGGCGATCCGCTGGAGAGGAGCACGGATATGGGCCCCTTGATTT
CACAGATGCAGTGGGAGAGAGTGCATGGTTTTGTGTCTCGCGCACAGGAG
GAAGGGGCAAAGGTTCTCTGCGGGGGAGGAAAGCCTTCCTTGACATCAAG
AGGAGGGGGGCCTTCCCTCGCTCCGTACCTAGCGGAAGGTTTCTTCTATT
CGCCTACTGTGATAAGCAACGTGCACCCAGGGATGGAGATCATGCAAGAA
GAAGTGTTCGGTCCTGTTGTATGTCTCTTGCCCTTCAAGGATGAGGCGCA
CGCGTTAGAACTTGCCAACAATTCGGTCTATGGCTTGGGCGCGAGCGTCC
ATACCCGGTGCAGTAAGAGAGGGCACCGTGTCGCTTCGCAGTTGCAGGCG
GGGATAGTTTGGATCAACGACCACCATCGCAATTCGCCCTCATCGCCCTG
GGGCGGGGTTACGGCAGCGAGTGGGTTGGGAAGGGAGAATGGGAGGGAGG
GACTGCGGGAGTACACGCAGGAGAAGAGCGTGGTTGTCGGGTATGGCGAA
GAGAGGTTCGATTGGTTCTCGAAAAATAAGGGGTTAAGGTATGGCTAAGA
GGGGGGTAAGAAGGGCTAACCTGAGCAAAGATTGAGGATAATGCGGATCA
ATAGAGAAGAACGAGAAGAGTGATGACGGGAAAAAGAACATCACAGCTAA
ATCACGCAAGGAATTATATATAAGTATATCTCTTCCTCCATGAGTCCTTG
GGCAAAGTATGAAATCTTCGAATCATGAGCAATGACGACGTCTTGTGATC
CAGTTCTTTTCTTAATTCAAATCGTCATCATTCTCTTCGTTGCCACCAGA
GTATAACTGCCACCATCAGCAATAGCAGCCCTGATCCCACCATACCTAAT
GTCAGGAGAGTAGCCTTTGAGAGAGTGGAGGGAGAAGAGCGCAAGGCTTT
CCTTTTAGTAGTGGCTGTGTTTGTAGCCGTTGCTCTTGTAGTCGTTGTCA
TTGTTGCGGCTGCCGTCGGTCTCTTTCTTACCACTGGTGCTGCTACTGGT
GCTGCTGGTACTGCTGCTGCTTTGGCTGCTGGCTTCGCTGCCGTTGTCTT
GTCCGCATCCAAGTTATTATTTACCCGCAAGAGCACTGACGGTGCCAAGG
CAGGCGCTTGTTGTTCGAGGACTAGCAGTCTAAAGGGCGAGGAAGAGAAG
GAGGAGGAAGTAGAAGAGACCCCACCTACCGGTACCGCCACTGCTCCTGC
TTTTTCTCCTTCCGCTTTCGCCATTATATTTCGTAACCGAATCCATGCTT
CTTCCTGCCCTTCCTTCCCCCCTTCCTTTAGAGAGCCAGGCGAGACGTAA
TCAACCAGCGGGACCGTCGAGGACGAGGAGAAGGAGGAGGAGGGGGGAGA
AGACAGCAACACCCGCCGTGGGAACTGTACCATTCCGCCACTCCACCCAT
C back to topCoding sequence (CDS) from alignment at scaffold_23:245818..248618- >mRNA_8273 ID=mRNA_8273|Name=jgi.p|Nanoce1779_2|559315|organism=Nannochloropsis oceanica|type=CDS|length=3420bp|location=Sequence derived from alignment at scaffold_23:245818..248618- (Nannochloropsis oceanica)
CCCAAGACATCGACCTTGCCGTCGCTGCCGCTGAAGCGAGCTTTCTGTCC
GGCACTTGGTCTCGACATACAGACGCGCGCGGTCGGAGCCAAGTCCTCCT
TAGAATGGCCCAGGGGCTACAGAAACGCTTACCAGAGCTCGCTCGCTTGG
AGAGCCTGCAAACAGGGCGACCTTTGAGGGAGATGGAAGCACAGCTCATG
CGGTTGCCGGAATGGTTTGAATATTTCGCCGCGCTGATCCGAACCGAAGA
AGGCGGCCTTCCTGTCTTTCCTGGCTCGTATATAAACTACGTTCAACGTA
TTCCTCTTGGCATCTGTGCCCTTCTCACCCCATGGAACCATCCCTTGTTA
ATAGCCGTCAAAAAGCTCGCGCCTGCCCTTGCTGCCGGGAACAGCGTGGT
CCTAAAGCCTCCAGAACTTGCTCCACTGGCCGTTTTAGCCCTGGGAGAGA
TAGGTAAAGAGGCAGGCTTGCCTTCCGGAGTTCTTAATATAACCCCAGGA
CAAGGGAAAGTCGCAGGGAGGGCTCTTGCCGCCCATCCGCGTGTGAGGAA
AGTGGATTTGACCGGTGGAACGGCGACGGGGCGCATGACTGCGTGCGTGG
CGGGGAAGAATCTCGCCAGTGTGGTTGCGGAGCTTGGAGGGAAGGCACCG
ATGCTTGTATTTGGTGATGTGGATGTGAAGGACGCCGTGGCTATGTGTGC
GTTTGCGGCATTTGTCGCGTCGGGGCAGACATGCGTGTCGGGGAGTCGCT
TATTGGTTCACGAGTCGATTTATGAAGATTTTTCGAAGAGGTTTGTCGCC
AAAGCGCAGGGTTTGAAATTAGGCGATCCGCTGGAGAGGAGCACGGATAT
GGGCCCCTTGATTTCACAGATGCAGTGGGAGAGAGTGCATGGTTTTGTGT
CTCGCGCACAGGAGGAAGGGGCAAAGGTTCTCTGCGGGGGAGGAAAGCCT
TCCTTGACATCAAGAGGAGGGGGGCCTTCCCTCGCTCCGTACCTAGCGGA
AGGTTTCTTCTATTCGCCTACTGTGATAAGCAACGTGCACCCAGGGATGG
AGATCATGCAAGAAGAAGTGTTCGGTCCTGTTGTATGTCTCTTGCCCTTC
AAGGATGAGGCGCACGCGTTAGAACTTGCCAACAATTCGGTCTATGGCTT
GGGCGCGAGCGTCCATACCCGGTGCAGTAAGAGAGGGCACCGTGTCGCTT
CGCAGTTGCAGGCGGGGATAGTTTGGATCAACGACCACCATCGCAATTCG
CCCTCATCGCCCTGGGGCGGGGTTACGGCAGCGAGTGGGTTGGGAAGGGA
GAATGGGAGGGAGGGACTGCGGGAGTACACGCAGGAGAAGAGCGTGGTTG
TCGGGTATGGCGAAGAGAGGTTCGATTGGTTCTCGAAAAATAAGGGGTTA
AGGTATGGCTAAATGAGCTCCTTGGCCTCGTCATCGAACCTTCTACTCCT
CCCTCACCGGCTTCATCGATTAATAGCACCATGGTATAAAAACGATCGCC
ATCGCCTCCTCTCCCCATCCTCCTCCTCCTCCTTTTCCTCCTCCTCCTCT
TTTTCTTCATCTTCTTCTTCCTCATCTCCTCGTCCAAGCGTGCAGCGTCA
TGGTCTTTGGGTCAATAATGAGGACCGCCCAGCCTTAAATGGGTTGACAC
ACACCCTGCAGAGCCCCGCGACCCGCCAGGAACTGGGTCATGTTGTCGAT
ATTGCCGAGGCCCAAGACATCGACCTTGCCGTCGCTGCCGCTGAAGCGAG
CTTTCTGTCCGGCACTTGGTCTCGACATACAGACGCGCGCGGTCGGAGCC
AAGTCCTCCTTAGAATGGCCCAGGGGCTACAGAAACGCTTACCAGAGCTC
GCTCGCTTGGAGAGCCTGCAAACAGGGCGACCTTTGAGGGAGATGGAAGC
ACAGCTCATGCGGTTGCCGGAATGGTTTGAATATTTCGCCGCGCTGATCC
GAACCGAAGAAGGCGGCCTTCCTGTCTTTCCTGGCTCGTATATAAACTAC
GTTCAACGTATTCCTCTTGGCATCTGTGCCCTTCTCACCCCATGGAACCA
TCCCTTGTTAATAGCCGTCAAAAAGCTCGCGCCTGCCCTTGCTGCCGGGA
ACAGCGTGGTCCTAAAGCCTCCAGAACTTGCTCCACTGGCCGTTTTAGCC
CTGGGAGAGATAGGTAAAGAGGCAGGCTTGCCTTCCGGAGTTCTTAATAT
AACCCCAGGACAAGGGAAAGTCGCAGGGAGGGCTCTTGCCGCCCATCCGC
GTGTGAGGAAAGTGGATTTGACCGGTGGAACGGCGACGGGGCGCATGACT
GCGTGCGTGGCGGGGAAGAATCTCGCCAGTGTGGTTGCGGAGCTTGGAGG
GAAGGCACCGATGCTTGTATTTGGTGATGTGGATGTGAAGGACGCCGTGG
CTATGTGTGCGTTTGCGGCATTTGTCGCGTCGGGGCAGACATGCGTGTCG
GGGAGTCGCTTATTGGTTCACGAGTCGATTTATGAAGATTTTTCGAAGAG
GTTTGTCGCCAAAGCGCAGGGTTTGAAATTAGGCGATCCGCTGGAGAGGA
GCACGGATATGGGCCCCTTGATTTCACAGATGCAGTGGGAGAGAGTGCAT
GGTTTTGTGTCTCGCGCACAGGAGGAAGGGGCAAAGGTTCTCTGCGGGGG
AGGAAAGCCTTCCTTGACATCAAGAGGAGGGGGGCCTTCCCTCGCTCCGT
ACCTAGCGGAAGGTTTCTTCTATTCGCCTACTGTGATAAGCAACGTGCAC
CCAGGGATGGAGATCATGCAAGAAGAAGTGTTCGGTCCTGTTGTATGTCT
CTTGCCCTTCAAGGATGAGGCGCACGCGTTAGAACTTGCCAACAATTCGG
TCTATGGCTTGGGCGCGAGCGTCCATACCCGGTGCAGTAAGAGAGGGCAC
CGTGTCGCTTCGCAGTTGCAGGCGGGGATAGTTTGGATCAACGACCACCA
TCGCAATTCGCCCTCATCGCCCTGGGGCGGGGTTACGGCAGCGAGTGGGT
TGGGAAGGGAGAATGGGAGGGAGGGACTGCGGGAGTACACGCAGGAGAAG
AGCGTGGTTGTCGGGTATGGCGAAGAGAGGTTCGATTGGTTCTCGAAAAA
TAAGGGGTTAAGGTATGGCTAAATGAGCTCCTTGGCCTCGTCATCGAACC
TTCTACTCCTCCCTCACCGGCTTCATCGATTAATAGCACCATGGTATAAA
AACGATCGCCATCGCCTCCTCTCCCCATCCTCCTCCTCCTCCTTTTCCTC
CTCCTCCTCTTTTTCTTCATCTTCTTCTTCCTCATCTCCTCGTCCAAGCG
TGCAGCGTCATGGTCTTTGGGTCAATAATGAGGACCGCCCAGCCTTAAAT
GGGTTGACACACACCCTGCAGAGCCCCGCGACCCGCCAGGAACTGGGTCA
TGTTGTCGATATTGCCGAGG back to top
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