jgi.p|Nanoce1779_2|601401, mRNA_8270 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601401
Unique Name	mRNA_8270
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2523
Alignment location	scaffold_23:240071..243899 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601487
Track	FilteredModels2
ProteinId	601401

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:240071..243899 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601401	gene_8270	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601401	mRNA_8270-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8270	CDS_8270	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:240071..243899+
coding sequence from alignment at scaffold_23:240071..243899+

mRNA sequence

>mRNA_8270 ID=mRNA_8270|Name=jgi.p|Nanoce1779_2|601401|organism=Nannochloropsis oceanica|type=mRNA|length=2523bp
AAGGTTCTCTCCCCGGCCTGTGGACCTGTTGGCGTGTGGAGGATCGACCG
ACCTTTCCCCAATGCGCCATTCCAGCGAAGCAAGCAAGCAAGCAAAGCGT
GACAAGAAAATGACCTAGGACGGCTTGTCTGCTGTGTGTATGTATTGTGT
GAATGCCTGAAGATAGACCACGTTGCTTGTCTGTCCTCAAACTGTGGATG
TGCCACGCACTCACGAATGTGGACACGTTACTTTCCTTGTTGTACCCTCC
TCTTGCATTTCATCCTCTTTCCCCATCATCAAACCACGACAGCTGCGAGA
AGCAGGCTGGAACAAACGTACCATGACACGCATTTCCTTTCTCCTGCAGC
CTCGACGACGGCCAGCGGCCGCAAACCTCCTCTCTGCGTCTGTCCTGCAG
CAGCTCCCCCTCCCTTACCGCCAAGGCTGCCTATCCAGCGCCCTTGCCAC
AGTCTCTCGAAGCGGCGGCGGGCGGCGAAAGCGGACCTCCCTTTCCTCCT
CCTACGCTTCTTCCTCTACCAGGACCACAACAAGCAAAAACAGCAATAGT
AGCAGTGTTTCCTCCACCCCGCCTTTACACACCCACCCACTCCCTAAACC
TCCTGCTACTGCTGCTCCTCCTTCCCTTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCCTCTTCCTCCTCATCTTCCATTGCGACCTCGCATCCC
ATCCTTCTTCGTGTTGTGGGAGGCGCAGCTGTGATTATGGCGGGCGGCAT
CGCTTACGTGTGGACGCACCCCGAAAGCATAGGCATGGACCCCGAGACGA
ATGCATGGGAGCTAAGTCAAGCAATGCTTAGGGGCTTACGCCTGGGAAAG
ACCGTTGTCCTTGTCGTTGCTGACTACAAACTTTCCTCGTATGGTTGGTG
GGACCCGACTGCAAGCACAAAAGCAGGAGGAAGAGGAGGGGGAGTAGCAA
TCGCAGCGGCAGCAGCAGCAGCGGAAGTGGCGTTGCTGGAAGCGGAGAGG
GAAATGAGGGAGTCTCAGAATGCGTACGAGGAAGTGAGCTGGTCGCTGAG
GAAATTACAGGAGCAAGAGGAGGGCCAAAGAGGGAGAGAGGAAAGCCGGG
AGCAAGAACAGGGTGGAGGATGGTGGAGGTGGATGAAGAGGAGCACCGGC
AGTGCTGCAGCGGTTGCACGGAAGAAGAAACAGGTGCTGGTGGGGAAGTT
GGAGAGGGAGGCGAAGGAAGCGAGGGAGAGGCTGTTGGCAGCTGCAGCTC
GATTGAGTAAAGTCGAGGAGCACGCCAAGGGACTAAGTCAGAAAGGGAGG
GTGCACCAGCGAGTCGCGGACAGGCTGTTGGAGCTTTGCCAGCTCAATCT
GGGTTGCTACATCAAAATTGGGCAGCATCTGTCCAACCTCGACTATCTCC
TTCCTCGGGAGGTCACCGACACACTTAAGGTCCTCCTGAATCGCGCCCCT
GTGTCTTCTTACGAAGATGTGTGTGCGGTGATCAAGGAGGAACTAGGAAA
GACGCCCGCAGAGCTTTGGAGCTCGTTCGATCCTGTGCCGATTGCCTCTG
CTTCCCTCGCGCAGGTCCATATCGCCACGGACGCGGCCGGGAGGAAGTTG
GCAGTGAAGGTGCAGCATCGGGGTCTCAGGGAACTGAGCCGAGGCGACGT
GGCAGCTGTCTCGTTTTTTGTAAATGCAGTCGCGAAAGCATTTCCTGAAT
TCAGTTACAAGTGGATCGCCGACGAGCTTGCCCCGCAACTTCCCAAGGAA
TTGGACTTCGTCAACGAAGCCATGAACGCCGAGCGCGCCGATGCCTTTTT
CAAGAAACACCGGAATGATGTCGTGATCCCCGCCGTTGTCTGGGAGCAAA
CGAAACCTCGCGTCCTAACCATGGCCTTCGAAGAGGGTGTGTGTGCAACG
GACGTGACAGCCATGAAGAATATGGGCCTGCCCTTGGACAGAGTCGCGCG
GCTCATCTCCTCTGTCTTCTGCGAGCAGGTTTTCTCCTCTGGTTTCGCAC
ACTGCGATCCTCACCCGGCGAATGTTCTGATCAGGGGGGGGCACAAGGGT
GATCCTTACAAGCCCCTTCTCGTTTTACTGGACCACGGATTATATAAAGA
GCTCCCGGACCAACTACGGGTTGATTACGCTTCCTTGTGGAAAGCCCTGG
TCTTGAAGGACATGGCGGGTGTCAAGTTCTACTGCCAGAAGCTCAATGCA
GGCGAGATGTACTCTCTGCTGGCCGCCATCCTTACCTCCCGTTCCTGGGA
CGACATCACCAGCCCTGATCTAGGTTCCCTCCGAGCCCCAAGTTCCCAGG
AAGACAAGACATTGATAAGGAGCTACGCCCAGCGGTACTATTTCGAGATC
GTCGAGATTTTGAACTCGGTTCCACGTGAGATGTTGCTCTTGTTGAAGAT
GAACGACTGTTTAAGACATATAGATAGAGAGCTAGGCGCCCCTGTGAACA
GCTCGCTAGTCACTGCAGAAGAAGCCGTCAAGGCGTTGTTGCGAGAAGAG
CTGAAGGCAGGAGCGAGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|601401

>mRNA_8270-protein ID=mRNA_8270-protein|Name=jgi.p|Nanoce1779_2|601401|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MWTRYFPCCTLLLHFILFPHHQTTTAARSRLEQTYHDTHFLSPAASTTAS
GRKPPLCVCPAAAPPPLPPRLPIQRPCHSLSKRRRAAKADLPFLLLRFFL
YQDHNKQKQQ*

mRNA from alignment at scaffold_23:240071..243899+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8270 ID=mRNA_8270|Name=jgi.p|Nanoce1779_2|601401|organism=Nannochloropsis oceanica|type=mRNA|length=3829bp|location=Sequence derived from alignment at scaffold_23:240071..243899+ (Nannochloropsis oceanica)
AAGGTTCTCTCCCCGGCCTGTGGACCTGTTGGCGTGTGGAGGATCGACCG
ACCTTTCCCCAATGCGCCATTCCAGCGAAGCAAGCAAGCAAGCAAAGCGT
GACAAGAAAATGACCTAGGACGGCTTGTCTGCTGTGTGTATGTATTGTGT
GAATGCCTGAAGATAGACCACGTTGCTTGTCTGTCCTCAAACTGTGGATG
TGCCACGCACTCACGAATGTGGACACGTTACTTTCCTTGTTGTACCCTCC
TCTTGCATTTCATCCTCTTTCCCCATCATCAAACCACGACAGCTGCGAGA
AGCAGGCTGGAACAAACGTACCATGACACGCATTTCCTTTCTCCTGCAGC
CTCGACGACGGCCAGCGGCCGCAAACCTCCTCTCTGCGTCTGTCCTGCAG
CAGCTCCCCCTCCCTTACCGCCAAGGCTGCCTATCCAGCGCCCTTGCCAC
AGTCTCTCGAAGCGGCGGCGGGCGGCGAAAGCGGACCTCCCTTTCCTCCT
CCTACGCTTCTTCCTCTACCAGGACCACAACAAGCAAAAACAGCAATAGT
AGCAGTGTTTCCTCCACCCCGCCTTTACACACCCACCCACTCCCTAAACC
TCCTGCTACTGCTGCTCCTCCTTCCCTTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCCTCTTCCTCCTCATCTTCCATTGCGACCTCGCATCCC
ATCCTTCTTCGTGTTGTGGGAGGCGCAGCTGTGATTATGGCGGGCGGCAT
CGCTTACGTGTGGACGCACCCCGAAAGCATAGGCATGGACCCCGAGACGA
ATGCATGGGAGCTAAGTCAAGCAATGCTTAGGTACACGCCTTACATGAAG
ACTTGTTTTGGTTTCTCTGTTTCTTTCAATCAAGCAACCGCCAAACATGT
GAAATCAATCCCCCTTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCC
CTCCCTCCTTCCCTCCCTCCTTCCCTCCCCTCAGGGGCTTACGCCTGGGA
AAGACCGTTGTCCTTGTCGTTGCTGACTACAAACTTTCCTCGTATGGTTG
GTGGGACCCGACTGCAAGCACAAAAGCAGGAGGAAGAGGAGGGGGAGTAG
CAATCGCAGCGGCAGCAGCAGCAGCGGAAGTGGCGTTGCTGGAAGCGGAG
AGGGAAATGAGGGAGTCTCAGAATGCGTACGAGGAAGTGAGCTGGTCGCT
GAGGAAATTACAGGAGCAAGAGGAGGGCCAAAGAGGGAGAGAGGAAAGCC
GGGAGCAAGAACAGGGTGGAGGATGGTGGAGGTGGATGAAGAGGAGCACC
GGCAGTGCTGCAGCGGTTGCACGGAAGAAGAAACAGGTGCTGGTGGGGAA
GTTGGAGAGGGAGGCGAAGGAAGCGAGGGAGAGGCTGTTGGCAGCTGCAG
CTCGATTGAGTAAAGTCGAGGAGCACGCCAAGGGACTAAGTCAGAAAGGG
AGGGTGCACCAGCGAGTCGCGGACAGGCTGTTGGAGCTTTGCCAGCTCAA
TCTGGGTTGCTGTAAGTTGGGAGGGAGAGAGGGAGGGAGGGAGGGTGTAA
ACATTGACAATGCCTCCCCTAATTGTTTTGGATAGTATGACAAATCTTTT
TCACATGCCCTCCTTCTCCTGTCCTCTCCCTTTCCTCCCTCAGACATCAA
AATTGGGCAGCATCTGTCCAACCTCGACTATCTCCTTCCTCGGGAGGTCA
CCGACACACTTAAGGTCCTCCTGAATCGCGCCCCTGTGTCTTCTTACGAA
GATGTGTGTGCGGTGATCAAGGAGGAACTAGGAAAGACGCCCGCAGAGCT
TTGGAGCTCGTTCGATCCTGTGCCGATTGCCTCTGCTTCCCTCGCGCAGG
TGAGGAACAAGGGAGGAAGGAAGAGAGGGATAAAGGGTCCATATTTCTTT
GTCTCCTCTTCCCCCGCGCAGATGCATCCCTTCCCTCTTTCCTGTCCTCC
CTCCCCTTCCTCCCCACAGCGTAGCATAGTTTTTTTTAAAATTAAATGAA
ATAAACAAATATATCAATGAATATATAATAAATATATTTAGTTAAAAATG
AATAAAATCCTTCATTTCTATTTCTACAGGTCCATATCGCCACGGACGCG
GCCGGGAGGAAGTTGGCAGTGAAGGTGCAGCATCGGGGTCTCAGGGAACT
GAGCCGAGGCGACGTGGCAGCTGTCTCGTTTTTTGTAAATGCAGTCGCGA
AAGCATTTCCTGAATTCAGGTAATTATTTGATCTTTATTAGATGTTGATA
TGAGTAACTCATTAAATGTTTATTTTTAATGATATTTATTCGTTATATCT
ATGTACATATATTTGGTCATATACTCATCTAAGTCCATCGCATTATGAGT
TACTTAATATATAAACAAAAAAAAAATGAAAAGAAATTCGTAAAAAAAGA
CGGGAAAAAAATAAGGAAATACAAATCGTCCACCTCATGACAGTTACAAG
TGGATCGCCGACGAGCTTGCCCCGCAACTTCCCAAGGAATTGGACTTCGT
CAACGAAGCCATGAACGCCGAGCGCGCCGATGCCTTTTTCAAGAAACACC
GGAATGATGTCGTGGTACGCCTTATGTTCTCCCCTCTTTCCTTCCCTCCC
TCCCCCCTGCCCTCCCTCCCCTCCTCCGTTTTTCAGCGTTCAATACTCCT
TTTTGCACATTTTCTTGCCCGTCTCCCCCCCCCCTTTTAAATATTTTCTC
CCACCCGCACCCCCTCCATCCCTTCTATCCCTCCTAGATCCCCGCCGTTG
TCTGGGAGCAAACGAAACCTCGCGTCCTAACCATGGCCTTCGAAGAGGGT
GTGTGTGCAACGGACGTGACAGCCATGAAGAATATGGGCCTGCCCTTGGA
CAGAGTCGCGCGGCTCATCTCCTCTGTCTTCTGCGAGCAGGTGCATATCC
TTGTTATCCTCCCTCCCCCCCTTCCCCTCCTGGCCCCTTTCCCCCTCCCT
CTTCTTCTACCTCGACATCGAAACTCTTACCTCCCATGTATACTCTTATC
CTCTCCTTTGTTTTTTTTTGCAGTCATAATTTATCCATTTATCCATTCAT
TCACTCATGATCCACTCATCCGTGCATTTTTAATGCATTCACCTCTCTAG
GTTTTCTCCTCTGGTTTCGCACACTGCGATCCTCACCCGGCGAATGTTCT
GATCAGGGGGGGGCACAAGGGTGATCCTTACAAGCCCCTTCTCGTTTTAC
TGGACCACGGATTATATAAAGAGCTCCCGGACCAACTACGGGTTGATTAC
GCTTCCTTGTGGAAAGCCCTGGTCTTGAAGGACATGGCGGGTGTCAAGTT
CTACTGCCAGAAGCTCAATGCAGGTGAGGGAGGAAGGGATTGGAGGGAAG
AAGGGGAGAGTGATGGTCGGTTGGTTGATTGCCCTCTCAACTGTTGATCA
GATGGATACAAGTGTAATTTTGCTGGGCTATTTTACCATCAATGAATCGA
TATAAGTATACACATGTTCCGGTTTTTCATGTATCTTTTTTTCCCCTTCA
CCTACAGGCGAGATGTACTCTCTGCTGGCCGCCATCCTTACCTCCCGTTC
CTGGGACGACATCACCAGCCCTGATCTAGGTTCCCTCCGAGCCCCAAGTT
CCCAGGAAGACAAGACATTGATAAGGAGCTACGCCCAGCGGTACTATTTC
GAGATCGTCGAGATTTTGAACTCGGTTCCACGTGAGATGTTGCTCTTGTT
GAAGATGAACGACTGTTTAAGACATATAGATAGAGAGCTAGGCGCCCCTG
TGAACAGCTCGCTAGTCACTGCAGAAGAAGCCGTCAAGGCGTTGTTGCGA
GAAGAGCTGAAGGCAGGAGCGAGGGAGGG

Coding sequence (CDS) from alignment at scaffold_23:240071..243899+

>mRNA_8270 ID=mRNA_8270|Name=jgi.p|Nanoce1779_2|601401|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_23:240071..243899+ (Nannochloropsis oceanica)
ATGTGGACACGTTACTTTCCTTGTTGTACCCTCCTCTTGCATTTCATCCT
CTTTCCCCATCATCAAACCACGACAGCTGCGAGAAGCAGGCTGGAACAAA
CGTACCATGACACGCATTTCCTTTCTCCTGCAGCCTCGACGACGGCCAGC
GGCCGCAAACCTCCTCTCTGCGTCTGTCCTGCAGCAGCTCCCCCTCCCTT
ACCGCCAAGGCTGCCTATCCAGCGCCCTTGCCACAGTCTCTCGAAGCGGC
GGCGGGCGGCGAAAGCGGACCTCCCTTTCCTCCTCCTACGCTTCTTCCTC
TACCAGGACCACAACAAGCAAAAACAGCAATAG

Synonyms

Publications