jgi.p|Nanoce1779_2|523331, mRNA_827 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|523331
Unique NamemRNA_827
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length702
Alignment locationscaffold_2:518455..519156 -

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Properties
Property NameValue
TranscriptId523417
TrackFilteredModels2
ProteinId523331
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:518455..519156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523331gene_827Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_827CDS_827Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523331mRNA_827-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_827 ID=mRNA_827|Name=jgi.p|Nanoce1779_2|523331|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
ATGCGGCGGACCGGTGGCTGGCGGGGTCAAAGCAGAGGAGGCAACCCATC
GTCTCCAGCGGCAGCAGGTTTTAGCACCAAGAACGAGGATGCGGGGGGAA
GAAAGGAGGAGGAAGAGGAAGAGAAAAACCAAGAGAAGCAACAGCAAGAA
GAAGAAGAACCGGAAACCGAGGGCCCGCCGGAGGATGGGGAAAAGATAGG
GTTCATGCGTGGATTAGCTTACCTAACCGTGGCCGTCATTGCGGCGGGTT
CCTTGTACTTTATCGTGGACGAGCTCATGCCCAGTCGCACGAGCGCCAAC
CACCTCTTTAACGAGGCATTCGACGCAGTGAAACAAAACCATGACGTGTT
GAATCGGTACGGGGAGCCATTGAAAGGTTACGGCCGGGATGGGGGGGGAC
GGCGGGAGGGACGCAGAAATTTTGTGGAGCATAAGAATTATGTGGGGGAG
GATGGGAGTAAGAGGCTGCGGATTCGCTTTAACATTGAAGGGCCATTTGG
ACACGCGTTTGTATTTGCAGAGGTGACATCAGACATGCCCAAGGGACAAT
GGATGTATTTATTGGTCCAGGACATTCAAACGGGGCGGGTGATGACGTTG
GAAGATAACCGTGCCATGCACCAGGCCTTGGCCAAGTCGGCCTCGCCCGA
AGAGAGGGCGGCGTTGCAGGCGTTGATACAGAGTGGAGGAAGCCAGCGGT
AA
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protein sequence of jgi.p|Nanoce1779_2|523331

>mRNA_827-protein ID=mRNA_827-protein|Name=jgi.p|Nanoce1779_2|523331|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MRRTGGWRGQSRGGNPSSPAAAGFSTKNEDAGGRKEEEEEEKNQEKQQQE
EEEPETEGPPEDGEKIGFMRGLAYLTVAVIAAGSLYFIVDELMPSRTSAN
HLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGE
DGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTL
EDNRAMHQALAKSASPEERAALQALIQSGGSQR*
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mRNA from alignment at scaffold_2:518455..519156-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_827 ID=mRNA_827|Name=jgi.p|Nanoce1779_2|523331|organism=Nannochloropsis oceanica|type=mRNA|length=702bp|location=Sequence derived from alignment at scaffold_2:518455..519156- (Nannochloropsis oceanica)
ATGCGGCGGACCGGTGGCTGGCGGGGTCAAAGCAGAGGAGGCAACCCATC
GTCTCCAGCGGCAGCAGGTTTTAGCACCAAGAACGAGGATGCGGGGGGAA
GAAAGGAGGAGGAAGAGGAAGAGAAAAACCAAGAGAAGCAACAGCAAGAA
GAAGAAGAACCGGAAACCGAGGGCCCGCCGGAGGATGGGGAAAAGATAGG
GTTCATGCGTGGATTAGCTTACCTAACCGTGGCCGTCATTGCGGCGGGTT
CCTTGTACTTTATCGTGGACGAGCTCATGCCCAGTCGCACGAGCGCCAAC
CACCTCTTTAACGAGGCATTCGACGCAGTGAAACAAAACCATGACGTGTT
GAATCGGTACGGGGAGCCATTGAAAGGTTACGGCCGGGATGGGGGGGGAC
GGCGGGAGGGACGCAGAAATTTTGTGGAGCATAAGAATTATGTGGGGGAG
GATGGGAGTAAGAGGCTGCGGATTCGCTTTAACATTGAAGGGCCATTTGG
ACACGCGTTTGTATTTGCAGAGGTGACATCAGACATGCCCAAGGGACAAT
GGATGTATTTATTGGTCCAGGACATTCAAACGGGGCGGGTGATGACGTTG
GAAGATAACCGTGCCATGCACCAGGCCTTGGCCAAGTCGGCCTCGCCCGA
AGAGAGGGCGGCGTTGCAGGCGTTGATACAGAGTGGAGGAAGCCAGCGGT
AA
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Coding sequence (CDS) from alignment at scaffold_2:518455..519156-

>mRNA_827 ID=mRNA_827|Name=jgi.p|Nanoce1779_2|523331|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_2:518455..519156- (Nannochloropsis oceanica)
ATGCGGCGGACCGGTGGCTGGCGGGGTCAAAGCAGAGGAGGCAACCCATC
GTCTCCAGCGGCAGCAGGTTTTAGCACCAAGAACGAGGATGCGGGGGGAA
GAAAGGAGGAGGAAGAGGAAGAGAAAAACCAAGAGAAGCAACAGCAAGAA
GAAGAAGAACCGGAAACCGAGGGCCCGCCGGAGGATGGGGAAAAGATAGG
GTTCATGCGTGGATTAGCTTACCTAACCGTGGCCGTCATTGCGGCGGGTT
CCTTGTACTTTATCGTGGACGAGCTCATGCCCAGTCGCACGAGCGCCAAC
CACCTCTTTAACGAGGCATTCGACGCAGTGAAACAAAACCATGACGTGTT
GAATCGGTACGGGGAGCCATTGAAAGGTTACGGCCGGGATGGGGGGGGAC
GGCGGGAGGGACGCAGAAATTTTGTGGAGCATAAGAATTATGTGGGGGAG
GATGGGAGTAAGAGGCTGCGGATTCGCTTTAACATTGAAGGGCCATTTGG
ACACGCGTTTGTATTTGCAGAGGTGACATCAGACATGCCCAAGGGACAAT
GGATGTATTTATTGGTCCAGGACATTCAAACGGGGCGGGTGATGACGTTG
GAAGATAACCGTGCCATGCACCAGGCCTTGGCCAAGTCGGCCTCGCCCGA
AGAGAGGGCGGCGTTGCAGGCGTTGATACAGAGTGGAGGAAGCCAGCGGT
AA
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Synonyms
Publications