jgi.p|Nanoce1779_2|601379, mRNA_8265 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601379
Unique NamemRNA_8265
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1399
Alignment locationscaffold_23:227511..228909 -

Link to JBrowse

Properties
Property NameValue
TranscriptId601465
TrackFilteredModels2
ProteinId601379
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:227511..228909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601379gene_8265Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601379mRNA_8265-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8265CDS_8265Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8265 ID=mRNA_8265|Name=jgi.p|Nanoce1779_2|601379|organism=Nannochloropsis oceanica|type=mRNA|length=1399bp
TGCTGCTGCTGCTGCTGCTGCTGCTCGTATGGATGGAACAGCACTACCTC
GTCATCCTCCACCCCCTCTTCCACCCCCCCCATCTCCGCCAGAGGCACAT
GACCCCTCCTTCCATCCCTCCCTCTGTCTTTACTTTTTAAAAAACGGGCA
TAGAGATCCTTCACTCTCTTCTTCATGGTGTCTCCTACTTCCTCCATTCC
CTTCTTCAGATTTGCAAAGCCTTCCTCGGCCCCCGCTGGCAAGAAAGATG
GCGAAGGAGAGGAGGCAGAAGGGCGTCGTCTTTGTGCGGCCGTGGGAGCC
GGGTATCCAGCTGATGAAGGACGGTAGAGATGTCCTCCTTCCTGCCGCTG
CTGCCGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGGGCAATCACATCGT
CTTCCTGCTGGAGCATTCGCGCTAGTTGCTCATCCATCAAAAGCTGCTGG
TGAGGAGAGCGGGGAAGGGAGGAAGGGGTGGTCGCGCGACGGGCATTGTG
ACCTGGGACGCGGAGAAAGTCGTCAGGCAAAGTGGTGGGGCGGCCACGGG
GAAGATTGGAGGGAGGAAGGAAATCATGGGAGGGGTAATTGCGGGTTGAA
GAGGCGGAGGCGGCCGACGAAGAGATGGAGGGGGAGGGAGAGGAGGAGGA
AGAGGGGGGAGGGCCATTCATTTCCATGCTGAGGCGGCGAGCCATGGCTT
CGTCTGATTCTCCCCCCGACGGCGGCGGCTGCGGCTGCTGCTGTTGACCA
AGTAAAGGGGAGGGGGAGGGGCCGACTGAGGGAGGTGGAGATGGCGTGTT
GAGGAGGACCTCGATTGTCCGCTCCATGTTCCATTGATTGTCAGACAGGA
GCTGGCCTGTTTTTGTGTTGATGGATAGATAGGGGTCAGGGAGTAGGGCG
GCATGGGGTGTGAGAATGTCAGAGGAGGGCGGGGTTTCCATGTTCGCATC
ATGCGCTCTCCGCTAATAACCCAAGCGCAGCTCACATTTTTAAAAATGTG
TTCTAAGGGATCAATCACGCTCTATTGTCCCTTCGCCCCCACAAGAACCT
CCTCGCCCTGTCCTTACCCAAGGCCGCGGCACTCAACCCTCTCTCAGGGA
ACATGCTTTGTAACGTCTGAATGGCATCGTCAAAGGAAATGCTCGCCGCC
GGAGGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCGGGGTGCTCATGGTTTATTATTTTGTAAGACAGG
GAGATAGAACCGCTTCCCTTGCTAATGCTTCTGCGTTCAAGAGCAGGAGA
CAGGAGCACGGAGGCAAGTGTCTGTCGATGCTTCGTCTCGCAGCTGGAAA
CACCACGTGAGGACGGGTAAAGACGGCGCTTGGAGAGATTTGTGCTCCT
back to top

protein sequence of jgi.p|Nanoce1779_2|601379

>mRNA_8265-protein ID=mRNA_8265-protein|Name=jgi.p|Nanoce1779_2|601379|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
LQSLPRPPLARKMAKERRQKGVVFVRPWEPGIQLMKDGRDVLLPAAAAAA
AAAAAAAAGQSHRLPAGAFALVAHPSKAAGEESGEGRKGWSRDGHCDLGR
GESRQAKWWGGHGEDWREEGNHGRGNCGLKRRRRPTKRWRGRERRRKRGE
GHSFPC*
back to top

mRNA from alignment at scaffold_23:227511..228909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8265 ID=mRNA_8265|Name=jgi.p|Nanoce1779_2|601379|organism=Nannochloropsis oceanica|type=mRNA|length=1399bp|location=Sequence derived from alignment at scaffold_23:227511..228909- (Nannochloropsis oceanica)
TGCTGCTGCTGCTGCTGCTGCTGCTCGTATGGATGGAACAGCACTACCTC
GTCATCCTCCACCCCCTCTTCCACCCCCCCCATCTCCGCCAGAGGCACAT
GACCCCTCCTTCCATCCCTCCCTCTGTCTTTACTTTTTAAAAAACGGGCA
TAGAGATCCTTCACTCTCTTCTTCATGGTGTCTCCTACTTCCTCCATTCC
CTTCTTCAGATTTGCAAAGCCTTCCTCGGCCCCCGCTGGCAAGAAAGATG
GCGAAGGAGAGGAGGCAGAAGGGCGTCGTCTTTGTGCGGCCGTGGGAGCC
GGGTATCCAGCTGATGAAGGACGGTAGAGATGTCCTCCTTCCTGCCGCTG
CTGCCGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGGGCAATCACATCGT
CTTCCTGCTGGAGCATTCGCGCTAGTTGCTCATCCATCAAAAGCTGCTGG
TGAGGAGAGCGGGGAAGGGAGGAAGGGGTGGTCGCGCGACGGGCATTGTG
ACCTGGGACGCGGAGAAAGTCGTCAGGCAAAGTGGTGGGGCGGCCACGGG
GAAGATTGGAGGGAGGAAGGAAATCATGGGAGGGGTAATTGCGGGTTGAA
GAGGCGGAGGCGGCCGACGAAGAGATGGAGGGGGAGGGAGAGGAGGAGGA
AGAGGGGGGAGGGCCATTCATTTCCATGCTGAGGCGGCGAGCCATGGCTT
CGTCTGATTCTCCCCCCGACGGCGGCGGCTGCGGCTGCTGCTGTTGACCA
AGTAAAGGGGAGGGGGAGGGGCCGACTGAGGGAGGTGGAGATGGCGTGTT
GAGGAGGACCTCGATTGTCCGCTCCATGTTCCATTGATTGTCAGACAGGA
GCTGGCCTGTTTTTGTGTTGATGGATAGATAGGGGTCAGGGAGTAGGGCG
GCATGGGGTGTGAGAATGTCAGAGGAGGGCGGGGTTTCCATGTTCGCATC
ATGCGCTCTCCGCTAATAACCCAAGCGCAGCTCACATTTTTAAAAATGTG
TTCTAAGGGATCAATCACGCTCTATTGTCCCTTCGCCCCCACAAGAACCT
CCTCGCCCTGTCCTTACCCAAGGCCGCGGCACTCAACCCTCTCTCAGGGA
ACATGCTTTGTAACGTCTGAATGGCATCGTCAAAGGAAATGCTCGCCGCC
GGAGGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCGGGGTGCTCATGGTTTATTATTTTGTAAGACAGG
GAGATAGAACCGCTTCCCTTGCTAATGCTTCTGCGTTCAAGAGCAGGAGA
CAGGAGCACGGAGGCAAGTGTCTGTCGATGCTTCGTCTCGCAGCTGGAAA
CACCACGTGAGGACGGGTAAAGACGGCGCTTGGAGAGATTTGTGCTCCT
back to top

Coding sequence (CDS) from alignment at scaffold_23:227511..228909-

>mRNA_8265 ID=mRNA_8265|Name=jgi.p|Nanoce1779_2|601379|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_23:227511..228909- (Nannochloropsis oceanica)
TTGCAAAGCCTTCCTCGGCCCCCGCTGGCAAGAAAGATGGCGAAGGAGAG
GAGGCAGAAGGGCGTCGTCTTTGTGCGGCCGTGGGAGCCGGGTATCCAGC
TGATGAAGGACGGTAGAGATGTCCTCCTTCCTGCCGCTGCTGCCGCTGCT
GCCGCTGCTGCTGCTGCTGCTGCTGGGCAATCACATCGTCTTCCTGCTGG
AGCATTCGCGCTAGTTGCTCATCCATCAAAAGCTGCTGGTGAGGAGAGCG
GGGAAGGGAGGAAGGGGTGGTCGCGCGACGGGCATTGTGACCTGGGACGC
GGAGAAAGTCGTCAGGCAAAGTGGTGGGGCGGCCACGGGGAAGATTGGAG
GGAGGAAGGAAATCATGGGAGGGGTAATTGCGGGTTGAAGAGGCGGAGGC
GGCCGACGAAGAGATGGAGGGGGAGGGAGAGGAGGAGGAAGAGGGGGGAG
GGCCATTCATTTCCATGCTGA
back to top
Synonyms
Publications