jgi.p|Nanoce1779_2|568339, mRNA_8263 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568339
Unique NamemRNA_8263
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length699
Alignment locationscaffold_23:222480..223178 +

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Properties
Property NameValue
TranscriptId568425
TrackFilteredModels2
ProteinId568339
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:222480..223178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568339gene_8263Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568339mRNA_8263-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8263CDS_8263Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8263 ID=mRNA_8263|Name=jgi.p|Nanoce1779_2|568339|organism=Nannochloropsis oceanica|type=mRNA|length=699bp
ATGACAGGAAGGATGGAGGGAGAAAGAGGTGATGGTGCAGATGTTGGCGA
AGAGATAGAAATTGAGAAACAAAAGAATGGAGGGATTGGTGGTGTTGTTG
ATATGAAAGGAACGAAAGAAGAAGTGAGAGAGAGAAGGAATAGTGGTGAT
AGTGAGGAGGGGGCGAGGGGTGGAGGGAGATTGCGATCGAGGGGGAGGAC
GTTGGTCTTATGTAGGCCCATCACAGGAAGAACACACCAGATTCGATGTC
ATCTGCAATGGTTAGGTTTCCCCATAGTGAATGATCCGAATTATGGGCTC
AATGAGGAGGTAAATGCGTTTCGAAAGAGGTGGGGAGGTAAAAGAGGGGA
AGAAGGAAAAGAAGAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGTGAGGGTGGTGGAGAGAAAGCGCGTGTGAAGATATTT
GAATCGCTTCCAGCCATGGAAGACAAGGAAGGGAGGGAAGGAAAGGGAAA
GGGGCGCGAGGCAGAGACGGAAGAGGAACGTATTGAAAGGCTTTGTCCTT
ATTGTTATCATGGCGACGAGGTGATGTTTAAGGAAGAGCAGTTGCACCAC
AAGGGAATATGCTTGCATGCTTGGAAATATGAGGGCAGGAGCTGGAAATT
CGAAACGCAGCCCCCGACATGGGCGCAGGGTTTGCTGCCAGAGCTTTGA
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protein sequence of jgi.p|Nanoce1779_2|568339

>mRNA_8263-protein ID=mRNA_8263-protein|Name=jgi.p|Nanoce1779_2|568339|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MTGRMEGERGDGADVGEEIEIEKQKNGGIGGVVDMKGTKEEVRERRNSGD
SEEGARGGGRLRSRGRTLVLCRPITGRTHQIRCHLQWLGFPIVNDPNYGL
NEEVNAFRKRWGGKRGEEGKEEGGGGGGGGGGGGGGGGEGGGEKARVKIF
ESLPAMEDKEGREGKGKGREAETEEERIERLCPYCYHGDEVMFKEEQLHH
KGICLHAWKYEGRSWKFETQPPTWAQGLLPEL*
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mRNA from alignment at scaffold_23:222480..223178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8263 ID=mRNA_8263|Name=jgi.p|Nanoce1779_2|568339|organism=Nannochloropsis oceanica|type=mRNA|length=699bp|location=Sequence derived from alignment at scaffold_23:222480..223178+ (Nannochloropsis oceanica)
ATGACAGGAAGGATGGAGGGAGAAAGAGGTGATGGTGCAGATGTTGGCGA
AGAGATAGAAATTGAGAAACAAAAGAATGGAGGGATTGGTGGTGTTGTTG
ATATGAAAGGAACGAAAGAAGAAGTGAGAGAGAGAAGGAATAGTGGTGAT
AGTGAGGAGGGGGCGAGGGGTGGAGGGAGATTGCGATCGAGGGGGAGGAC
GTTGGTCTTATGTAGGCCCATCACAGGAAGAACACACCAGATTCGATGTC
ATCTGCAATGGTTAGGTTTCCCCATAGTGAATGATCCGAATTATGGGCTC
AATGAGGAGGTAAATGCGTTTCGAAAGAGGTGGGGAGGTAAAAGAGGGGA
AGAAGGAAAAGAAGAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGTGAGGGTGGTGGAGAGAAAGCGCGTGTGAAGATATTT
GAATCGCTTCCAGCCATGGAAGACAAGGAAGGGAGGGAAGGAAAGGGAAA
GGGGCGCGAGGCAGAGACGGAAGAGGAACGTATTGAAAGGCTTTGTCCTT
ATTGTTATCATGGCGACGAGGTGATGTTTAAGGAAGAGCAGTTGCACCAC
AAGGGAATATGCTTGCATGCTTGGAAATATGAGGGCAGGAGCTGGAAATT
CGAAACGCAGCCCCCGACATGGGCGCAGGGTTTGCTGCCAGAGCTTTGA
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Coding sequence (CDS) from alignment at scaffold_23:222480..223178+

>mRNA_8263 ID=mRNA_8263|Name=jgi.p|Nanoce1779_2|568339|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_23:222480..223178+ (Nannochloropsis oceanica)
ATGACAGGAAGGATGGAGGGAGAAAGAGGTGATGGTGCAGATGTTGGCGA
AGAGATAGAAATTGAGAAACAAAAGAATGGAGGGATTGGTGGTGTTGTTG
ATATGAAAGGAACGAAAGAAGAAGTGAGAGAGAGAAGGAATAGTGGTGAT
AGTGAGGAGGGGGCGAGGGGTGGAGGGAGATTGCGATCGAGGGGGAGGAC
GTTGGTCTTATGTAGGCCCATCACAGGAAGAACACACCAGATTCGATGTC
ATCTGCAATGGTTAGGTTTCCCCATAGTGAATGATCCGAATTATGGGCTC
AATGAGGAGGTAAATGCGTTTCGAAAGAGGTGGGGAGGTAAAAGAGGGGA
AGAAGGAAAAGAAGAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGTGAGGGTGGTGGAGAGAAAGCGCGTGTGAAGATATTT
GAATCGCTTCCAGCCATGGAAGACAAGGAAGGGAGGGAAGGAAAGGGAAA
GGGGCGCGAGGCAGAGACGGAAGAGGAACGTATTGAAAGGCTTTGTCCTT
ATTGTTATCATGGCGACGAGGTGATGTTTAAGGAAGAGCAGTTGCACCAC
AAGGGAATATGCTTGCATGCTTGGAAATATGAGGGCAGGAGCTGGAAATT
CGAAACGCAGCCCCCGACATGGGCGCAGGGTTTGCTGCCAGAGCTTTGA
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Synonyms
Publications