jgi.p|Nanoce1779_2|188147, mRNA_8260 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|188147
Unique Name	mRNA_8260
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2021
Alignment location	scaffold_23:216272..218407 +

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Properties


Property Name	Value
TranscriptId	188233
Track	FilteredModels2
ProteinId	188147

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:216272..218407 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|188147	gene_8260	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|188147	mRNA_8260-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8260	CDS_8260	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:216272..218407+
coding sequence from alignment at scaffold_23:216272..218407+

mRNA sequence

>mRNA_8260 ID=mRNA_8260|Name=jgi.p|Nanoce1779_2|188147|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp
TGGTCTTTGCCCTAGACGTGGGAATCGCTTGAGCGCTGCAGCACGAGGAG
AAGTAAGAGTTACCAGAGGCCTGTGAGCAGATATAGGGTTTGGTGGGGCG
TGATTATACCAGGGATATGCAGAAATTAAAAGATGGAACAAATTCACCTG
CGGCAGTAGCAATGGAGTCTGCGGCCGTCATGGCAAATTTGGAGATGGCC
GAGACACCAAGGGAAGGAGCATCGGCACCGGCACCAGCACAAGCGACCTA
TGCACTCACTGGCAGCACGAGCAGCACAAATGACAAGAAGAGCAGTAATA
GCGGTGCCAACACCAACAGTGGTAGCAACAATGCTAATGGCGACGTCGTC
GCGCGGCAAGCACAAAGCGCAAACGCTCCCCCCCCCAAAGCAGCCAGCAG
CCCAACGACAACTACCCCTGCTGCTGCTGTTGCTGGTGCTGGTGCTGCTG
CCAGTACCGCCGCCATCCCTTCATCGAATGAAAGAGGGGGGAAAAGAGGT
GGGAAGGCTTTTATTATCGTCCCTTATCGTGACCTACACCCAGAGCAGCA
ACGCGCGAAGCACTTACAACGTTTTCTGACGGAGCTACCCCGCTTGCTTA
CCGCTCACATAAAAGGAGAATGTGAAGGCGAAGAACGTAACGAAAAAGGG
GTCGAGGAGAAAAGAAGGAAAGTAGTCGGAGGAGATGGAGGAGGAGGAGC
ATCAATCCTGCCGTCTTACCACATCTACATCATCGAGCAAAGCAACGACG
ACCGTAAGTTCAACCGTGGGAAGCTCCTTAACATCGGCTTTGACATCGCC
TTTAAGGACTCAAAAGAGGCAGCATACGAAAATGAGATTGAGAATAATGA
GAAGGAGGAAGATGAGGAGGATGGTACTAGGGAAGGCGAGAGAGAAGACT
CTCTAGCGGCTTCGGTTTTCGTTTTCCATGATGTCGATTTATTGCCCCGC
TCGTCCCTGATTCCTCTTTATTTGACACGACCTTCCCTCCCTGTGCATAT
TGCAAGAGCTTGGAAGAGGTACAGTGGCAACCCCAAATATTTTGGTGGGG
CTGTGGCATTTAATTCCCAGGATTTCATAAGGATTAATGGCTTTCCGAAT
ACGTTTTGGGGATGGGGAGGGGAAGATGACGAGATGCGAAAGAGAGTGGA
TGAGGCAGGATTGCAAGTACGGAAACCGACGAAGAAGGAGGAGGAAGGAG
GGATGGAGGACATGGAGGGGGTAAGTTTGGAGGAGAAGCTGGCGGTCTTG
CGGAGTAATAGGGAGTGGAAATGTAACGTCAAGTGGGAGGTACTCGCCGA
GCATGATGAGACCTGGAATACGAACGGTTTAAAGGATTTGAAATATGCAG
TGTTGAGGAGAGAGGAGATGGAAATAGAAAGGGAGGGAGGAAGGGAAGGA
GGGAGGGTGACGAAGGTGATGGTGGATGTGATGGCGAATGGACATTGGAC
CGACACGGTTTTCGAAGGCGGGCCGTCCTCAGGAGGAGGGAGAAGAGGAG
GGGGAGGAGGAGGGGGAGGAGGCAACAGCGGGTGGAAGAGGAGGGACGGC
AATAATGGTGGTGATGATAGAGATAGAGAGCAAGATCGTAAGCCTTTGCA
TGGTGGCGGTGGTTGGCGAGTTGGAGAAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGGGAAAGAAGAGGGAGAGGG
GGAGGAGGATCTGACTATCGAGGGTGGAGAGATGATGATCGGACGCACAA
GAAACGACGAACTTAAAAATGAGGATTTCGAAAAAAGTGAAACGGAAAGA
AAGAATCACTGTGCAAGATACCATGAACAGGCCTCAACGACAACACTACG
ATGACAAGAACAATAACAACAACATCAATATCGACAAAGAAATGAAAGAG
AAAGAGGAGAAAAAGAGGAAGGAAAAGAAGGGGAGATACCATACACTTAG
GTTATCTATTTTTCCTTCACTCCTTGCCCTTTTTTACAGTTATCCCCCCC
CCCCCTTTTAACAAGCAGTCC

protein sequence of jgi.p|Nanoce1779_2|188147

>mRNA_8260-protein ID=mRNA_8260-protein|Name=jgi.p|Nanoce1779_2|188147|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MQKLKDGTNSPAAVAMESAAVMANLEMAETPREGASAPAPAQATYALTGS
TSSTNDKKSSNSGANTNSGSNNANGDVVARQAQSANAPPPKAASSPTTTT
PAAAVAGAGAAASTAAIPSSNERGGKRGGKAFIIVPYRDLHPEQQRAKHL
QRFLTELPRLLTAHIKGECEGEERNEKGVEEKRRKVVGGDGGGGASILPS
YHIYIIEQSNDDRKFNRGKLLNIGFDIAFKDSKEAAYENEIENNEKEEDE
EDGTREGEREDSLAASVFVFHDVDLLPRSSLIPLYLTRPSLPVHIARAWK
RYSGNPKYFGGAVAFNSQDFIRINGFPNTFWGWGGEDDEMRKRVDEAGLQ
VRKPTKKEEEGGMEDMEGVSLEEKLAVLRSNREWKCNVKWEVLAEHDETW
NTNGLKDLKYAVLRREEMEIEREGGREGGRVTKVMVDVMANGHWTDTVFE
GGPSSGGGRRGGGGGGGGGNSGWKRRDGNNGGDDRDREQDRKPLHGGGGW
RVGEGGGGGGGGGGGGGEGGEGERRGRGGGGSDYRGWRDDDRTHKKRRT*

mRNA from alignment at scaffold_23:216272..218407+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8260 ID=mRNA_8260|Name=jgi.p|Nanoce1779_2|188147|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp|location=Sequence derived from alignment at scaffold_23:216272..218407+ (Nannochloropsis oceanica)
TGGTCTTTGCCCTAGACGTGGGAATCGCTTGAGCGCTGCAGCACGAGGAG
AAGTAAGAGTTACCAGAGGCCTGTGAGCAGATATAGGGTTTGGTGGGGCG
TGATTATGTGAGTAGGAAGAAATGCGGAGGGCATGGTGGAGGAATTTAAT
GATGCGGACGTTGCTATCGCCCAGTTCATTTAAATCATCATTTCCGCCCT
GAATACATGCACATATACCCAGACCAGGGATATGCAGAAATTAAAAGATG
GAACAAATTCACCTGCGGCAGTAGCAATGGAGTCTGCGGCCGTCATGGCA
AATTTGGAGATGGCCGAGACACCAAGGGAAGGAGCATCGGCACCGGCACC
AGCACAAGCGACCTATGCACTCACTGGCAGCACGAGCAGCACAAATGACA
AGAAGAGCAGTAATAGCGGTGCCAACACCAACAGTGGTAGCAACAATGCT
AATGGCGACGTCGTCGCGCGGCAAGCACAAAGCGCAAACGCTCCCCCCCC
CAAAGCAGCCAGCAGCCCAACGACAACTACCCCTGCTGCTGCTGTTGCTG
GTGCTGGTGCTGCTGCCAGTACCGCCGCCATCCCTTCATCGAATGAAAGA
GGGGGGAAAAGAGGTGGGAAGGCTTTTATTATCGTCCCTTATCGTGACCT
ACACCCAGAGCAGCAACGCGCGAAGCACTTACAACGTTTTCTGACGGAGC
TACCCCGCTTGCTTACCGCTCACATAAAAGGAGAATGTGAAGGCGAAGAA
CGTAACGAAAAAGGGGTCGAGGAGAAAAGAAGGAAAGTAGTCGGAGGAGA
TGGAGGAGGAGGAGCATCAATCCTGCCGTCTTACCACATCTACATCATCG
AGCAAAGCAACGACGACCGTAAGTTCAACCGTGGGAAGCTCCTTAACATC
GGCTTTGACATCGCCTTTAAGGACTCAAAAGAGGCAGCATACGAAAATGA
GATTGAGAATAATGAGAAGGAGGAAGATGAGGAGGATGGTACTAGGGAAG
GCGAGAGAGAAGACTCTCTAGCGGCTTCGGTTTTCGTTTTCCATGATGTC
GATTTATTGCCCCGCTCGTCCCTGATTCCTCTTTATTTGACACGACCTTC
CCTCCCTGTGCATATTGCAAGAGCTTGGAAGAGGTACAGTGGCAACCCCA
AATATTTTGGTGGGGCTGTGGCATTTAATTCCCAGGATTTCATAAGGATT
AATGGCTTTCCGAATACGTTTTGGGGATGGGGAGGGGAAGATGACGAGAT
GCGAAAGAGAGTGGATGAGGCAGGATTGCAAGTACGGAAACCGACGAAGA
AGGAGGAGGAAGGAGGGATGGAGGACATGGAGGGGGTAAGTTTGGAGGAG
AAGCTGGCGGTCTTGCGGAGTAATAGGGAGTGGAAATGTAACGTCAAGTG
GGAGGTACTCGCCGAGCATGATGAGACCTGGAATACGAACGGTTTAAAGG
ATTTGAAATATGCAGTGTTGAGGAGAGAGGAGATGGAAATAGAAAGGGAG
GGAGGAAGGGAAGGAGGGAGGGTGACGAAGGTGATGGTGGATGTGATGGC
GAATGGACATTGGACCGACACGGTTTTCGAAGGCGGGCCGTCCTCAGGAG
GAGGGAGAAGAGGAGGGGGAGGAGGAGGGGGAGGAGGCAACAGCGGGTGG
AAGAGGAGGGACGGCAATAATGGTGGTGATGATAGAGATAGAGAGCAAGA
TCGTAAGCCTTTGCATGGTGGCGGTGGTTGGCGAGTTGGAGAAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGGGAA
AGAAGAGGGAGAGGGGGAGGAGGATCTGACTATCGAGGGTGGAGAGATGA
TGATCGGACGCACAAGAAACGACGAACTTAAAAATGAGGATTTCGAAAAA
AGTGAAACGGAAAGAAAGAATCACTGTGCAAGATACCATGAACAGGCCTC
AACGACAACACTACGATGACAAGAACAATAACAACAACATCAATATCGAC
AAAGAAATGAAAGAGAAAGAGGAGAAAAAGAGGAAGGAAAAGAAGGGGAG
ATACCATACACTTAGGTTATCTATTTTTCCTTCACTCCTTGCCCTTTTTT
ACAGTTATCCCCCCCCCCCCTTTTAACAAGCAGTCC

Coding sequence (CDS) from alignment at scaffold_23:216272..218407+

>mRNA_8260 ID=mRNA_8260|Name=jgi.p|Nanoce1779_2|188147|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at scaffold_23:216272..218407+ (Nannochloropsis oceanica)
ATGCAGAAATTAAAAGATGGAACAAATTCACCTGCGGCAGTAGCAATGGA
GTCTGCGGCCGTCATGGCAAATTTGGAGATGGCCGAGACACCAAGGGAAG
GAGCATCGGCACCGGCACCAGCACAAGCGACCTATGCACTCACTGGCAGC
ACGAGCAGCACAAATGACAAGAAGAGCAGTAATAGCGGTGCCAACACCAA
CAGTGGTAGCAACAATGCTAATGGCGACGTCGTCGCGCGGCAAGCACAAA
GCGCAAACGCTCCCCCCCCCAAAGCAGCCAGCAGCCCAACGACAACTACC
CCTGCTGCTGCTGTTGCTGGTGCTGGTGCTGCTGCCAGTACCGCCGCCAT
CCCTTCATCGAATGAAAGAGGGGGGAAAAGAGGTGGGAAGGCTTTTATTA
TCGTCCCTTATCGTGACCTACACCCAGAGCAGCAACGCGCGAAGCACTTA
CAACGTTTTCTGACGGAGCTACCCCGCTTGCTTACCGCTCACATAAAAGG
AGAATGTGAAGGCGAAGAACGTAACGAAAAAGGGGTCGAGGAGAAAAGAA
GGAAAGTAGTCGGAGGAGATGGAGGAGGAGGAGCATCAATCCTGCCGTCT
TACCACATCTACATCATCGAGCAAAGCAACGACGACCGTAAGTTCAACCG
TGGGAAGCTCCTTAACATCGGCTTTGACATCGCCTTTAAGGACTCAAAAG
AGGCAGCATACGAAAATGAGATTGAGAATAATGAGAAGGAGGAAGATGAG
GAGGATGGTACTAGGGAAGGCGAGAGAGAAGACTCTCTAGCGGCTTCGGT
TTTCGTTTTCCATGATGTCGATTTATTGCCCCGCTCGTCCCTGATTCCTC
TTTATTTGACACGACCTTCCCTCCCTGTGCATATTGCAAGAGCTTGGAAG
AGGTACAGTGGCAACCCCAAATATTTTGGTGGGGCTGTGGCATTTAATTC
CCAGGATTTCATAAGGATTAATGGCTTTCCGAATACGTTTTGGGGATGGG
GAGGGGAAGATGACGAGATGCGAAAGAGAGTGGATGAGGCAGGATTGCAA
GTACGGAAACCGACGAAGAAGGAGGAGGAAGGAGGGATGGAGGACATGGA
GGGGGTAAGTTTGGAGGAGAAGCTGGCGGTCTTGCGGAGTAATAGGGAGT
GGAAATGTAACGTCAAGTGGGAGGTACTCGCCGAGCATGATGAGACCTGG
AATACGAACGGTTTAAAGGATTTGAAATATGCAGTGTTGAGGAGAGAGGA
GATGGAAATAGAAAGGGAGGGAGGAAGGGAAGGAGGGAGGGTGACGAAGG
TGATGGTGGATGTGATGGCGAATGGACATTGGACCGACACGGTTTTCGAA
GGCGGGCCGTCCTCAGGAGGAGGGAGAAGAGGAGGGGGAGGAGGAGGGGG
AGGAGGCAACAGCGGGTGGAAGAGGAGGGACGGCAATAATGGTGGTGATG
ATAGAGATAGAGAGCAAGATCGTAAGCCTTTGCATGGTGGCGGTGGTTGG
CGAGTTGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGAAGGAGGAGAAGGGGAAAGAAGAGGGAGAGGGGGAGGAGGATCTGACT
ATCGAGGGTGGAGAGATGATGATCGGACGCACAAGAAACGACGAACTTAA

Synonyms

Publications