jgi.p|Nanoce1779_2|626174, mRNA_8259 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|626174
Unique NamemRNA_8259
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1414
Alignment locationscaffold_23:214715..216155 -

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Properties
Property NameValue
TranscriptId626260
TrackFilteredModels2
ProteinId626174
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:214715..216155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626174gene_8259Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626174mRNA_8259-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8259CDS_8259Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8259 ID=mRNA_8259|Name=jgi.p|Nanoce1779_2|626174|organism=Nannochloropsis oceanica|type=mRNA|length=1414bp
ATGCCTCTATATCTTGTTACCTTTGTATACCGCCTACTCGAATTTCGCTA
TGCTGAATTTGACATCATTTTAGACTTGCTTGGTCTTGACCCTACACTTG
TCTACGCCCCATCCCCTCCGGAAACCAAAGAGCAAAACCACTCCCATCTA
ATTGTCGATCTCCCCTCCGAGGTCATCGCCGCCGAGATTCAACGTCGTGC
CATCTTAATTGAATGTATTTTGGAGCTATGGGGCCACGGGAAGGATGCTG
ACGAACTTGACGCGAACCTTGCTGCCCTCCCTCCGGCCTTTTCCGCCCCC
TACATGCACCCCGACATGACCTGGTCTCTCCTCGTGAATGGCTCCGGCAA
AACTCTCACGATGGCAGAACAAGACTTAGCGCGTTTCCGTGTTCTACAAC
GCGTGCCTTTTCCCGGTCCTATTAAGCTCAAGAATCCGCAGCAGACGTTT
TGGTTGCTTGACCACGGCGCCGATAACCTAGACCCCACCCCCGACCACAT
GTATCTAGGGCGCGCCATCGCTTCTCGACAGGCTCGTGGGCGGGAGTGGG
TCGGAAAAGGGGACTTGAAACGAAGGACTTATCTTGGACCGACGTCGTTG
GATAATGAAATGGCGTTGCTGATGGCGAGTTTCGCGCATGTCCAACAGGG
GTCAATGGTCCTCGATCCCTTCGTTGGGACTGGATCGATTTTGGTGGCGT
GCACGCAATTTGGTGGGTTTTGTGTAGGAACAGACATTGATATTCGGATA
TTGCGTGGCAAGAAAGATGGGAAGAATCCCGCATCTAACTTTGCTCAGTA
CGGGTTGAGGCAACCCGAGTTGATCCGGAGTGATAATTCTTTGTTTTCGG
GGCATTTTCGCTCGCTCTCACTCTATGATGCCATTGTCTGTGATCCCCCT
TATGGCATCCGAGCCGGTGCACGTCAGTCTGGCAGTCGGCGGGAGGTCGT
AGCGCCTGTCCCTGAGCATATGCGCGCCGACCACATCCCACAAACAAGGC
CTTATGCAACGAAAGCAGTGATGAATGATTTGCTGAAGGTGGCAGCTCAC
GCGCTGAAAGTAGGCGGTAGGTTAGTCTATCTATTGCCTGTGGATATCAA
CCCGGAGGCAGGGCCAGAAGAGGGTGTGTTACCGACACACAGGTGTTTGG
ACTTGGTTTGTGTGAGGGACCAGAAGCTCAATAGCAAGTTGATTAGGAAG
ATGGTGGTGATGCTGGAAGAGGAAATGATGGAAGAGAAGAATGAGGTGAA
GCATGGGGAGGAGAACGCAGAAGAAGGAGGAAAGAGAGAGGAAGAGGAGA
TTGAGGCAGGGCCGGAGATGAAGAGACCGCATTTAGTGATGTAAATAATT
AGGGAAAAGAAAAAACTGACAAAAGTATTGATAGAATCGACTGAGAGGAG
AAGCAGTGCAGGAG
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protein sequence of jgi.p|Nanoce1779_2|626174

>mRNA_8259-protein ID=mRNA_8259-protein|Name=jgi.p|Nanoce1779_2|626174|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MPLYLVTFVYRLLEFRYAEFDIILDLLGLDPTLVYAPSPPETKEQNHSHL
IVDLPSEVIAAEIQRRAILIECILELWGHGKDADELDANLAALPPAFSAP
YMHPDMTWSLLVNGSGKTLTMAEQDLARFRVLQRVPFPGPIKLKNPQQTF
WLLDHGADNLDPTPDHMYLGRAIASRQARGREWVGKGDLKRRTYLGPTSL
DNEMALLMASFAHVQQGSMVLDPFVGTGSILVACTQFGGFCVGTDIDIRI
LRGKKDGKNPASNFAQYGLRQPELIRSDNSLFSGHFRSLSLYDAIVCDPP
YGIRAGARQSGSRREVVAPVPEHMRADHIPQTRPYATKAVMNDLLKVAAH
ALKVGGRLVYLLPVDINPEAGPEEGVLPTHRCLDLVCVRDQKLNSKLIRK
MVVMLEEEMMEEKNEVKHGEENAEEGGKREEEEIEAGPEMKRPHLVM*
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mRNA from alignment at scaffold_23:214715..216155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8259 ID=mRNA_8259|Name=jgi.p|Nanoce1779_2|626174|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp|location=Sequence derived from alignment at scaffold_23:214715..216155- (Nannochloropsis oceanica)
ATGCCTCTATATCTTGTTACCTTTGTATACCGCCTACTCGAATTTCGCTA
TGCTGAATTTGACATCATTTTAGACTTGCTTGGTCTTGACCCTACACTTG
TCTACGCCCCATCCCCTCCGGAAACCAAAGAGCAAAACCACTCCCATCTA
ATTGTCGATCTCCCCTCCGAGGTCATCGCCGCCGAGATTCAACGTCGTGC
CATCTTAATTGAATGTATTTTGGAGCTATGGGGCCACGGGAAGGATGCTG
ACGAACTTGACGCGAACCTTGCTGCCCTCCCTCCGGCCTTTTCCGCCCCC
TACATGCACCCCGACATGACCTGGTCTCTCCTCGTGAATGGCTCCGGCAA
AACTCTCACGATGGCAGAACAAGACTTAGCGCGTTTCCGTGTTCTACAAC
GCGTGCCTTTTCCCGGTCCTATTAAGCTCAAGAATCCGCAGCAGACGTTT
TGGTTGCTTGACCACGGCGCCGATAACCTAGACCCCACCCCCGACCACAT
GTATCTAGGGCGCGCCATCGCTTCTCGACAGGCTCGTGGGCGGGAGTGGG
TCGGAAAAGGGGACTTGAAACGAAGGACTTATCTTGGACCGACGTCGTTG
GATAATGAAATGGCGTTGCTGATGGCGAGTTTCGCGCATGTCCAACAGGG
GTCAATGGTCCTCGATCCCTTCGTTGGGACTGGATCGATTTTGGTGGCGT
GCACGCAATTTGGTGGGTTTTGTGTAGGAACAGACATTGATATTCGGATA
TTGCGTGGCAAGAAAGATGGGAAGAATCCCGCATCTAACTTTGCTCAGTA
CGGGTTGAGGCAACCCGAGTTGATCCGGAGTGATAATTCTTTGTTTTCGG
GGCATTTTCGCTCGCTCTCACTCTATGATGCCATTGTCTGTGATCCCCCT
TATGGCATCCGAGCCGGTGCACGTCAGTCTGGCAGTCGGCGGGAGGTCGT
AGCGCCTGTCCCTGAGCATATGCGCGCCGACCACATCCCACAAACAAGGC
CTTATGCAACGAAAGCAGTGATGAATGATTTGCTGAAGGTGGCAGCTCAC
GCGCTGAAAGTAGGCGGTAGGTTAGTCTATCTATTGCCTGTGGATATCAA
CCCGGAGGCAGGGCCAGAAGAGGGTGTGTTACCGACACACAGGTGTTTGG
ACTTGGTTTGTGTGAGGGACCAGAAGCTCAATAGCAAGTTGATTAGGAAG
ATGGTGGTGATGCGTAAGAGGAGAGATCCGAAGGAAGCAGTGGAAGAGGA
AATGATGGAAGAGAAGAATGAGGTGAAGCATGGGGAGGAGAACGCAGAAG
AAGGAGGAAAGAGAGAGGAAGAGGAGATTGAGGCAGGGCCGGAGATGAAG
AGACCGCATTTAGTGATGTAAATAATTAGGGAAAAGAAAAAACTGACAAA
AGTATTGATAGAATCGACTGAGAGGAGAAGCAGTGCAGGAG
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Coding sequence (CDS) from alignment at scaffold_23:214715..216155-

>mRNA_8259 ID=mRNA_8259|Name=jgi.p|Nanoce1779_2|626174|organism=Nannochloropsis oceanica|type=CDS|length=2688bp|location=Sequence derived from alignment at scaffold_23:214715..216155- (Nannochloropsis oceanica)
TGGAAGAGGAAATGATGGAAGAGAAGAATGAGGTGAAGCATGGGGAGGAG
AACGCAGAAGAAGGAGGAAAGAGAGAGGAAGAGGAGATTGAGGCAGGGCC
GGAGATGAAGAGACCGCATTTAGTGATGTAAATGCCTCTATATCTTGTTA
CCTTTGTATACCGCCTACTCGAATTTCGCTATGCTGAATTTGACATCATT
TTAGACTTGCTTGGTCTTGACCCTACACTTGTCTACGCCCCATCCCCTCC
GGAAACCAAAGAGCAAAACCACTCCCATCTAATTGTCGATCTCCCCTCCG
AGGTCATCGCCGCCGAGATTCAACGTCGTGCCATCTTAATTGAATGTATT
TTGGAGCTATGGGGCCACGGGAAGGATGCTGACGAACTTGACGCGAACCT
TGCTGCCCTCCCTCCGGCCTTTTCCGCCCCCTACATGCACCCCGACATGA
CCTGGTCTCTCCTCGTGAATGGCTCCGGCAAAACTCTCACGATGGCAGAA
CAAGACTTAGCGCGTTTCCGTGTTCTACAACGCGTGCCTTTTCCCGGTCC
TATTAAGCTCAAGAATCCGCAGCAGACGTTTTGGTTGCTTGACCACGGCG
CCGATAACCTAGACCCCACCCCCGACCACATGTATCTAGGGCGCGCCATC
GCTTCTCGACAGGCTCGTGGGCGGGAGTGGGTCGGAAAAGGGGACTTGAA
ACGAAGGACTTATCTTGGACCGACGTCGTTGGATAATGAAATGGCGTTGC
TGATGGCGAGTTTCGCGCATGTCCAACAGGGGTCAATGGTCCTCGATCCC
TTCGTTGGGACTGGATCGATTTTGGTGGCGTGCACGCAATTTGGTGGGTT
TTGTGTAGGAACAGACATTGATATTCGGATATTGCGTGGCAAGAAAGATG
GGAAGAATCCCGCATCTAACTTTGCTCAGTACGGGTTGAGGCAACCCGAG
TTGATCCGGAGTGATAATTCTTTGTTTTCGGGGCATTTTCGCTCGCTCTC
ACTCTATGATGCCATTGTCTGTGATCCCCCTTATGGCATCCGAGCCGGTG
CACGTCAGTCTGGCAGTCGGCGGGAGGTCGTAGCGCCTGTCCCTGAGCAT
ATGCGCGCCGACCACATCCCACAAACAAGGCCTTATGCAACGAAAGCAGT
GATGAATGATTTGCTGAAGGTGGCAGCTCACGCGCTGAAAGTAGGCGGTA
GGTTAGTCTATCTATTGCCTGTGGATATCAACCCGGAGGCAGGGCCAGAA
GAGGGTGTGTTACCGACACACAGGTGTTTGGACTTGGTTTGTGTGAGGGA
CCAGAAGCTCAATAGCAAGTTGATTAGGAAGATGGTGGTGATGCTGGAAG
AGGAAATGATGGAAGAGAAGAATGAGGTGAAGCATGGGGAGGAGAACGCA
GAAGAAGGAGGAAAGAGAGAGGAAGAGGAGATTGAGGCAGGGCCGGAGAT
GAAGAGACCGCATTTAGTGATGTAAATGCCTCTATATCTTGTTACCTTTG
TATACCGCCTACTCGAATTTCGCTATGCTGAATTTGACATCATTTTAGAC
TTGCTTGGTCTTGACCCTACACTTGTCTACGCCCCATCCCCTCCGGAAAC
CAAAGAGCAAAACCACTCCCATCTAATTGTCGATCTCCCCTCCGAGGTCA
TCGCCGCCGAGATTCAACGTCGTGCCATCTTAATTGAATGTATTTTGGAG
CTATGGGGCCACGGGAAGGATGCTGACGAACTTGACGCGAACCTTGCTGC
CCTCCCTCCGGCCTTTTCCGCCCCCTACATGCACCCCGACATGACCTGGT
CTCTCCTCGTGAATGGCTCCGGCAAAACTCTCACGATGGCAGAACAAGAC
TTAGCGCGTTTCCGTGTTCTACAACGCGTGCCTTTTCCCGGTCCTATTAA
GCTCAAGAATCCGCAGCAGACGTTTTGGTTGCTTGACCACGGCGCCGATA
ACCTAGACCCCACCCCCGACCACATGTATCTAGGGCGCGCCATCGCTTCT
CGACAGGCTCGTGGGCGGGAGTGGGTCGGAAAAGGGGACTTGAAACGAAG
GACTTATCTTGGACCGACGTCGTTGGATAATGAAATGGCGTTGCTGATGG
CGAGTTTCGCGCATGTCCAACAGGGGTCAATGGTCCTCGATCCCTTCGTT
GGGACTGGATCGATTTTGGTGGCGTGCACGCAATTTGGTGGGTTTTGTGT
AGGAACAGACATTGATATTCGGATATTGCGTGGCAAGAAAGATGGGAAGA
ATCCCGCATCTAACTTTGCTCAGTACGGGTTGAGGCAACCCGAGTTGATC
CGGAGTGATAATTCTTTGTTTTCGGGGCATTTTCGCTCGCTCTCACTCTA
TGATGCCATTGTCTGTGATCCCCCTTATGGCATCCGAGCCGGTGCACGTC
AGTCTGGCAGTCGGCGGGAGGTCGTAGCGCCTGTCCCTGAGCATATGCGC
GCCGACCACATCCCACAAACAAGGCCTTATGCAACGAAAGCAGTGATGAA
TGATTTGCTGAAGGTGGCAGCTCACGCGCTGAAAGTAGGCGGTAGGTTAG
TCTATCTATTGCCTGTGGATATCAACCCGGAGGCAGGGCCAGAAGAGGGT
GTGTTACCGACACACAGGTGTTTGGACTTGGTTTGTGTGAGGGACCAGAA
GCTCAATAGCAAGTTGATTAGGAAGATGGTGGTGATGC
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Synonyms
Publications