jgi.p|Nanoce1779_2|568336, mRNA_8258 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568336
Unique NamemRNA_8258
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length894
Alignment locationscaffold_23:213625..214518 +

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Properties
Property NameValue
TranscriptId568422
TrackFilteredModels2
ProteinId568336
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:213625..214518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568336gene_8258Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568336mRNA_8258-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8258CDS_8258Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8258 ID=mRNA_8258|Name=jgi.p|Nanoce1779_2|568336|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
ATGGACCGTTCCTACCGCCTGGGGCAATCACGAGATGTGCAAGTGTATCG
CTTCGTCGCCCAGGGTACCATCGAAGAAGTCTGCTACATGCGGCAAATTT
ATAAGCAGCAACTCAACAGCCTGGCCCTCGAACGCGTCACTGTCCGACGG
CCTTCTTCTCCTGTGGCGGGCATGGGGAAAAAGAAGGGGGGAAGGACGGA
CAGCGTGAAGTTTGACTCGGTGCAGGGAATCAAGGGGGAAGAAGGGGAGC
TTTTTGGTGTTGAGAATCTCTTGAGACTACAGAAAGAACCGTTCATCTTA
GATGTGAGAAAAAAATTTCGGGCGGAGGAAGGAAGGCAGAAGGACGACAT
AGAAAAGGAAGAAAACGGAGAAGAGGAGGAGGATAAGGGAGAGAAGGATT
TGAATGTAACGAGCACGGAGGTATTGGAAAGCCAATTGCGGGACGTGGTG
GAGATAGCAGCGGCGGGGAGGCACAGGAAAGGAGGGTTGAAAGGGGAGAA
GGGAAACGTGGACGTGGAATGCACGGCGGCGGATATTTGGGGATTGTTGG
GGGTAGAGGTACCGGAGAAGGAGGGGGGAGAGGAAAAAGAGGGGGAAGAA
GTGGATGAGGTTGAGGAATTTGACGACGACGAAGGGGAGGATGAGGCAGG
GGGATTGGAAGCAGAACATATGCGGCAGCGAAAGAAGGAGAAGAGAAGAG
AAACACAGCATAAGAATCAGGAGGTAGAAGAAGATTCGGAGGAGGAGGAG
GTAGAGGATGAGGAGGAGAAAGGAGAAAGAGAAGAAGAAAAGGAAGGTCT
GCCGACGCCAGATAAGCCTTTGTCTGCAAAGCTGAGCTTGTACATACCCG
CTTACGTGCAGGAAAAAAAAGAGGGAGAGAAAGTGAGGGAGTGA
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protein sequence of jgi.p|Nanoce1779_2|568336

>mRNA_8258-protein ID=mRNA_8258-protein|Name=jgi.p|Nanoce1779_2|568336|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MDRSYRLGQSRDVQVYRFVAQGTIEEVCYMRQIYKQQLNSLALERVTVRR
PSSPVAGMGKKKGGRTDSVKFDSVQGIKGEEGELFGVENLLRLQKEPFIL
DVRKKFRAEEGRQKDDIEKEENGEEEEDKGEKDLNVTSTEVLESQLRDVV
EIAAAGRHRKGGLKGEKGNVDVECTAADIWGLLGVEVPEKEGGEEKEGEE
VDEVEEFDDDEGEDEAGGLEAEHMRQRKKEKRRETQHKNQEVEEDSEEEE
VEDEEEKGEREEEKEGLPTPDKPLSAKLSLYIPAYVQEKKEGEKVRE*
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mRNA from alignment at scaffold_23:213625..214518+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8258 ID=mRNA_8258|Name=jgi.p|Nanoce1779_2|568336|organism=Nannochloropsis oceanica|type=mRNA|length=894bp|location=Sequence derived from alignment at scaffold_23:213625..214518+ (Nannochloropsis oceanica)
ATGGACCGTTCCTACCGCCTGGGGCAATCACGAGATGTGCAAGTGTATCG
CTTCGTCGCCCAGGGTACCATCGAAGAAGTCTGCTACATGCGGCAAATTT
ATAAGCAGCAACTCAACAGCCTGGCCCTCGAACGCGTCACTGTCCGACGG
CCTTCTTCTCCTGTGGCGGGCATGGGGAAAAAGAAGGGGGGAAGGACGGA
CAGCGTGAAGTTTGACTCGGTGCAGGGAATCAAGGGGGAAGAAGGGGAGC
TTTTTGGTGTTGAGAATCTCTTGAGACTACAGAAAGAACCGTTCATCTTA
GATGTGAGAAAAAAATTTCGGGCGGAGGAAGGAAGGCAGAAGGACGACAT
AGAAAAGGAAGAAAACGGAGAAGAGGAGGAGGATAAGGGAGAGAAGGATT
TGAATGTAACGAGCACGGAGGTATTGGAAAGCCAATTGCGGGACGTGGTG
GAGATAGCAGCGGCGGGGAGGCACAGGAAAGGAGGGTTGAAAGGGGAGAA
GGGAAACGTGGACGTGGAATGCACGGCGGCGGATATTTGGGGATTGTTGG
GGGTAGAGGTACCGGAGAAGGAGGGGGGAGAGGAAAAAGAGGGGGAAGAA
GTGGATGAGGTTGAGGAATTTGACGACGACGAAGGGGAGGATGAGGCAGG
GGGATTGGAAGCAGAACATATGCGGCAGCGAAAGAAGGAGAAGAGAAGAG
AAACACAGCATAAGAATCAGGAGGTAGAAGAAGATTCGGAGGAGGAGGAG
GTAGAGGATGAGGAGGAGAAAGGAGAAAGAGAAGAAGAAAAGGAAGGTCT
GCCGACGCCAGATAAGCCTTTGTCTGCAAAGCTGAGCTTGTACATACCCG
CTTACGTGCAGGAAAAAAAAGAGGGAGAGAAAGTGAGGGAGTGA
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Coding sequence (CDS) from alignment at scaffold_23:213625..214518+

>mRNA_8258 ID=mRNA_8258|Name=jgi.p|Nanoce1779_2|568336|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at scaffold_23:213625..214518+ (Nannochloropsis oceanica)
ATGGACCGTTCCTACCGCCTGGGGCAATCACGAGATGTGCAAGTGTATCG
CTTCGTCGCCCAGGGTACCATCGAAGAAGTCTGCTACATGCGGCAAATTT
ATAAGCAGCAACTCAACAGCCTGGCCCTCGAACGCGTCACTGTCCGACGG
CCTTCTTCTCCTGTGGCGGGCATGGGGAAAAAGAAGGGGGGAAGGACGGA
CAGCGTGAAGTTTGACTCGGTGCAGGGAATCAAGGGGGAAGAAGGGGAGC
TTTTTGGTGTTGAGAATCTCTTGAGACTACAGAAAGAACCGTTCATCTTA
GATGTGAGAAAAAAATTTCGGGCGGAGGAAGGAAGGCAGAAGGACGACAT
AGAAAAGGAAGAAAACGGAGAAGAGGAGGAGGATAAGGGAGAGAAGGATT
TGAATGTAACGAGCACGGAGGTATTGGAAAGCCAATTGCGGGACGTGGTG
GAGATAGCAGCGGCGGGGAGGCACAGGAAAGGAGGGTTGAAAGGGGAGAA
GGGAAACGTGGACGTGGAATGCACGGCGGCGGATATTTGGGGATTGTTGG
GGGTAGAGGTACCGGAGAAGGAGGGGGGAGAGGAAAAAGAGGGGGAAGAA
GTGGATGAGGTTGAGGAATTTGACGACGACGAAGGGGAGGATGAGGCAGG
GGGATTGGAAGCAGAACATATGCGGCAGCGAAAGAAGGAGAAGAGAAGAG
AAACACAGCATAAGAATCAGGAGGTAGAAGAAGATTCGGAGGAGGAGGAG
GTAGAGGATGAGGAGGAGAAAGGAGAAAGAGAAGAAGAAAAGGAAGGTCT
GCCGACGCCAGATAAGCCTTTGTCTGCAAAGCTGAGCTTGTACATACCCG
CTTACGTGCAGGAAAAAAAAGAGGGAGAGAAAGTGAGGGAGTGA
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Synonyms
Publications