jgi.p|Nanoce1779_2|601336, mRNA_8255 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601336
Unique Name	mRNA_8255
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1085
Alignment location	scaffold_23:203416..205582 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601422
Track	FilteredModels2
ProteinId	601336

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:203416..205582 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601336	gene_8255	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601336	mRNA_8255-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8255	CDS_8255	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:203416..205582+
coding sequence from alignment at scaffold_23:203416..205582+

mRNA sequence

>mRNA_8255 ID=mRNA_8255|Name=jgi.p|Nanoce1779_2|601336|organism=Nannochloropsis oceanica|type=mRNA|length=1085bp
CTTTTCATCGCCCATTCCCATTCATCAGCAGCACCAATATACACGTTATC
TCTGTGCCATGTCTCTCTCGCGACCGACTGAAGTCATGCAGGTAAAACGC
CTCTCGCAGCACGCCGTCCTTCCTGTGCGTGGCTCGGAATGGGCAGCCGG
TTATGATCTGGCAAGCGCTGAAGACACGGTGGTCCCCGCCGGTGGGAAGG
CGCTCGTCAAGACCGACCTCTCCATCGCCATTCCCGAGAACACCTACGCT
CGCATCGCCCCTCGCTCGGGCCTTGCGTGGAAGAAGCACATAGACGTAGG
TGCGGGTGTGGTGGATTATGATTACCGCGGACCCGTGGGTGTAGTTCTCT
TCAATCACGGCCAGGAGGACTTTCCCGTTGTCAAGGGCGATCGTGTGGCC
CAGCTAATCTTGGAAAAGATCTGTATGGCGCGTGTGGAGGAGGTGACGGA
GCTTTCGGAGACGAAGAGGGGAGCAGGGGGCTTTGGGAGTACCGGAATGC
AGGGACAGCAGGCGCAGCAGCAGCAAAAGGGAGAGCAGGAGGGGAAGAGG
ATGAAAGTAGAGGAAGTGGAAGTTCCGGGGCAAAAGGGCGCGCAGCTACT
GGTGATGCTGAAGGAGGTTGCTGAAGCCTTCCCCAGCGAGGAGGCATGGG
CTAAGAGCCTCAAGCCTCTTGCCTTGGTGGAGGACTCGCGGCTCTACGCG
GCATGGAGTGCGTATCAGGTGACGAAGGACTTGAAGGATTTGAAGGAGAC
TCTTCGTTTGATTACGCCGGCGGAACAGTAATTTAACTAATGCCTGTGCG
ATAGGATAAGGGAGAGAGAGAAAGAGCACGTATGGTACAGAGACATGAGG
ACAGGTTCAAAAGAGAAGTACAAACCTCAGTAACTCAGAAGAATATACTA
AGGGATTATGCCTGCGTACATGGGTACATACATGCTGCGTACGGGATTGA
TGGTATGAGAGATTGTGGACATGAGGTCAACGGGCGGAGAAAACCGTTGA
TCATGTGGGGAGGTTGGTGCAGCGTTGTGGCACACGATTGCCTGTCTACC
TAGAACTGAACGAAGAAAGAATGTGGGTCGCGCAG

protein sequence of jgi.p|Nanoce1779_2|601336

>mRNA_8255-protein ID=mRNA_8255-protein|Name=jgi.p|Nanoce1779_2|601336|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSLSRPTEVMQVKRLSQHAVLPVRGSEWAAGYDLASAEDTVVPAGGKALV
KTDLSIAIPENTYARIAPRSGLAWKKHIDVGAGVVDYDYRGPVGVVLFNH
GQEDFPVVKGDRVAQLILEKICMARVEEVTELSETKRGAGGFGSTGMQGQ
QAQQQQKGEQEGKRMKVEEVEVPGQKGAQLLVMLKEVAEAFPSEEAWAKS
LKPLALVEDSRLYAAWSAYQVTKDLKDLKETLRLITPAEQ*

mRNA from alignment at scaffold_23:203416..205582+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8255 ID=mRNA_8255|Name=jgi.p|Nanoce1779_2|601336|organism=Nannochloropsis oceanica|type=mRNA|length=2167bp|location=Sequence derived from alignment at scaffold_23:203416..205582+ (Nannochloropsis oceanica)
CTTTTCATCGCCCATTCCCATTCATCAGCAGCACCAATATACACGTTATC
TCTGTGCCATGTCTCTCTCGCGACCGACTGAAGTCATGCAGGTACATCGG
TGTCGCTCGAAAGAAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCAA
GGAGGGCTTAGTGGCGCCAAATAGGAAGGAAAGAATGCCCCTCTCTTAAG
TACGGACATGGAGGAGGACGTCAGTGACTCATACTACTTCCATCATGATT
CTTCTTTCTTCTCTTCGTCTGTCGTTCTTTCCCCACTGCCATGACTAGGT
AAAACGCCTCTCGCAGCACGCCGTCCTTCCTGTGCGTGGCTCGGAATGGG
CAGCCGGTTATGATCTGGCAAGGTAAATATACATTAAGGGAACAAGAGAA
AGAGGATCGGAAAAGGATAACCAAGGAAGTATTTCGAGAGAAGAGAACCA
GCTGTTGGAGCAGCAGCGTTCACTCAGTTGCGTCCCTTTTTTCCATCTTT
CCCACTTCTGTTACCCGCAGACACACTCATCTTTTCGCCATTCCCGTTTT
TTTTTTTTCCATTTCTGTCGCCCACCCGCAGACTGATCTTTCCCGCTTCC
CCACTAATTTTCCCATTCCTGTCACCCACAGCGCTGAAGACACGGTGGTC
CCCGCCGGTGGGAAGGCGCTCGTCAAGACCGACCTCTCCATCGCCATTCC
CGAGAACACCTACGCTCGCATCGGTAAGTCCTCCTTCCCTCCCTCCCTCC
CTCCCTCTCTCCCCCCTGTATTCTTGTTCTTTATTCAGATGCGGCGCCCA
CTCCTCTTACTGCGCTTCCGTCCGCGCTGGTTTCCCCCCCAACCCTTCCT
CTCTCCCTCCCCCCTCCTCCCCTTCCTCCAACTCACCTATTAAAGAAAAA
TAAGCATTACACCCACCTCCTCAACTGCTCCCTCCCTCCCTGCCCTTTCT
CCTGCAGCCCCTCGCTCGGGCCTTGCGTGGAAGAAGCACATAGACGTAGG
TGCGGGTGTGGTGGATTATGATTACCGCGGACCCGTGGGTGTAGTTCTCT
TCAATCACGGCCAGGAGGACTTTCCCGTTGTCAAGGGCGATCGTGTGGCC
CAGCTAATCTTGGAAAAGATCTGTATGGCGCGTGTGGAGGAGGTGACGGA
GCTTTCGGAGACGAAGAGGGGAGCAGGGGGCTTTGGGAGTACCGGAATGC
AGGGACAGCAGGCGCAGCAGCAGCAAAAGGGAGAGCAGGAGGGGAAGAGG
ATGAAAGTAGAGGAAGTGGAAGGTGAGTGGCGGACAATAAGTGGAGGGAG
CGTGGGAGGGAGGGAGGGAAGGGAAAACGCGGTTTTCCCCCTTCCTTTTT
CAAAAGAATGTACACAATAATATATGGATATATATGTTCTATATATATAT
ATATATAATTATTATAAATAAATAGAACTTTAGTTTTTCCCGACAAAATC
TTTTCTCCTCTGTCCTTCCCCCCCCATCCCAAAAATTTTCCCTACACAGT
TCCGGGGCAAAAGGGCGCGCAGCTACTGGTGATGCTGAAGGAGGTTGCTG
AAGCCTTCCCCAGCGAGGAGGCATGGGCTAAGAGCGTAAGTAGAGAGAGG
CTGTTGGGAAAGAAATGGAAAAGAGGAAGGAAAAATAGCATGTTATATAG
GATGGATCATACTTTTTCAGAGATGTGCTCACGAAAATACTAACGAAAAC
ATTTTTCTCCTCCCCTCCCTCCATCCCTCATTCCCTGCAGCTCAAGCCTC
TTGCCTTGGTGGAGGACTCGCGGCTCTACGCGGCATGGAGTGCGTATCAG
GTGACGAAGGACTTGAAGGATTTGAAGGAGACTCTTCGTTTGATTACGCC
GGCGGAACAGTAATTTAACTAATGCCTGTGCGATAGGATAAGGGAGAGAG
AGAAAGAGCACGTATGGTACAGAGACATGAGGACAGGTTCAAAAGAGAAG
TACAAACCTCAGTAACTCAGAAGAATATACTAAGGGATTATGCCTGCGTA
CATGGGTACATACATGCTGCGTACGGGATTGATGGTATGAGAGATTGTGG
ACATGAGGTCAACGGGCGGAGAAAACCGTTGATCATGTGGGGAGGTTGGT
GCAGCGTTGTGGCACACGATTGCCTGTCTACCTAGAACTGAACGAAGAAA
GAATGTGGGTCGCGCAG

Coding sequence (CDS) from alignment at scaffold_23:203416..205582+

>mRNA_8255 ID=mRNA_8255|Name=jgi.p|Nanoce1779_2|601336|organism=Nannochloropsis oceanica|type=CDS|length=4338bp|location=Sequence derived from alignment at scaffold_23:203416..205582+ (Nannochloropsis oceanica)
ATGTCTCTCTCGCGACCGACTGAAGTCATGCAGGTAAAACGCCTCTCGCA
GCACGCCGTCCTTCCTGTGCGTGGCTCGGAATGGGCAGCCGGTTATGATC
TGGCAAGCGCTGAAGACACGGTGGTCCCCGCCGGTGGGAAGGCGCTCGTC
AAGACCGACCTCTCCATCGCCATTCCCGAGAACACCTACGCTCGCATCGC
CCCTCGCTCGGGCCTTGCGTGGAAGAAGCACATAGACGTAGGTGCGGGTG
TGGTGGATTATGATTACCGCGGACCCGTGGGTGTAGTTCTCTTCAATCAC
GGCCAGGAGGACTTTCCCGTTGTCAAGGGCGATCGTGTGGCCCAGCTAAT
CTTGGAAAAGATCTGTATGGCGCGTGTGGAGGAGGTGACGGAGCTTTCGG
AGACGAAGAGGGGAGCAGGGGGCTTTGGGAGTACCGGAATGCAGGGACAG
CAGGCGCAGCAGCAGCAAAAGGGAGAGCAGGAGGGGAAGAGGATGAAAGT
AGAGGAAGTGGAAGTTCCGGGGCAAAAGGGCGCGCAGCTACTGGTGATGC
TGAAGGAGGTTGCTGAAGCCTTCCCCAGCGAGGAGGCATGGGCTAAGAGC
CTCAAGCCTCTTGCCTTGGTGGAGGACTCGCGGCTCTACGCGGCATGGAG
TGCGTATCAGGTGACGAAGGACTTGAAGGATTTGAAGGAGACTCTTCGTT
TGATTACGCCGGCGGAACAGTAAATGTCTCTCTCGCGACCGACTGAAGTC
ATGCAGGTAAAACGCCTCTCGCAGCACGCCGTCCTTCCTGTGCGTGGCTC
GGAATGGGCAGCCGGTTATGATCTGGCAAGCGCTGAAGACACGGTGGTCC
CCGCCGGTGGGAAGGCGCTCGTCAAGACCGACCTCTCCATCGCCATTCCC
GAGAACACCTACGCTCGCATCGCCCCTCGCTCGGGCCTTGCGTGGAAGAA
GCACATAGACGTAGGTGCGGGTGTGGTGGATTATGATTACCGCGGACCCG
TGGGTGTAGTTCTCTTCAATCACGGCCAGGAGGACTTTCCCGTTGTCAAG
GGCGATCGTGTGGCCCAGCTAATCTTGGAAAAGATCTGTATGGCGCGTGT
GGAGGAGGTGACGGAGCTTTCGGAGACGAAGAGGGGAGCAGGGGGCTTTG
GGAGTACCGGAATGCAGGGACAGCAGGCGCAGCAGCAGCAAAAGGGAGAG
CAGGAGGGGAAGAGGATGAAAGTAGAGGAAGTGGAAGTTCCGGGGCAAAA
GGGCGCGCAGCTACTGGTGATGCTGAAGGAGGTTGCTGAAGCCTTCCCCA
GCGAGGAGGCATGGGCTAAGAGCCTCAAGCCTCTTGCCTTGGTGGAGGAC
TCGCGGCTCTACGCGGCATGGAGTGCGTATCAGGTGACGAAGGACTTGAA
GGATTTGAAGGAGACTCTTCGTTTGATTACGCCGGCGGAACAGTAAATGT
CTCTCTCGCGACCGACTGAAGTCATGCAGGTAAAACGCCTCTCGCAGCAC
GCCGTCCTTCCTGTGCGTGGCTCGGAATGGGCAGCCGGTTATGATCTGGC
AAGCGCTGAAGACACGGTGGTCCCCGCCGGTGGGAAGGCGCTCGTCAAGA
CCGACCTCTCCATCGCCATTCCCGAGAACACCTACGCTCGCATCGCCCCT
CGCTCGGGCCTTGCGTGGAAGAAGCACATAGACGTAGGTGCGGGTGTGGT
GGATTATGATTACCGCGGACCCGTGGGTGTAGTTCTCTTCAATCACGGCC
AGGAGGACTTTCCCGTTGTCAAGGGCGATCGTGTGGCCCAGCTAATCTTG
GAAAAGATCTGTATGGCGCGTGTGGAGGAGGTGACGGAGCTTTCGGAGAC
GAAGAGGGGAGCAGGGGGCTTTGGGAGTACCGGAATGCAGGGACAGCAGG
CGCAGCAGCAGCAAAAGGGAGAGCAGGAGGGGAAGAGGATGAAAGTAGAG
GAAGTGGAAGTTCCGGGGCAAAAGGGCGCGCAGCTACTGGTGATGCTGAA
GGAGGTTGCTGAAGCCTTCCCCAGCGAGGAGGCATGGGCTAAGAGCCTCA
AGCCTCTTGCCTTGGTGGAGGACTCGCGGCTCTACGCGGCATGGAGTGCG
TATCAGGTGACGAAGGACTTGAAGGATTTGAAGGAGACTCTTCGTTTGAT
TACGCCGGCGGAACAGTAAATGTCTCTCTCGCGACCGACTGAAGTCATGC
AGGTAAAACGCCTCTCGCAGCACGCCGTCCTTCCTGTGCGTGGCTCGGAA
TGGGCAGCCGGTTATGATCTGGCAAGCGCTGAAGACACGGTGGTCCCCGC
CGGTGGGAAGGCGCTCGTCAAGACCGACCTCTCCATCGCCATTCCCGAGA
ACACCTACGCTCGCATCGCCCCTCGCTCGGGCCTTGCGTGGAAGAAGCAC
ATAGACGTAGGTGCGGGTGTGGTGGATTATGATTACCGCGGACCCGTGGG
TGTAGTTCTCTTCAATCACGGCCAGGAGGACTTTCCCGTTGTCAAGGGCG
ATCGTGTGGCCCAGCTAATCTTGGAAAAGATCTGTATGGCGCGTGTGGAG
GAGGTGACGGAGCTTTCGGAGACGAAGAGGGGAGCAGGGGGCTTTGGGAG
TACCGGAATGCAGGGACAGCAGGCGCAGCAGCAGCAAAAGGGAGAGCAGG
AGGGGAAGAGGATGAAAGTAGAGGAAGTGGAAGTTCCGGGGCAAAAGGGC
GCGCAGCTACTGGTGATGCTGAAGGAGGTTGCTGAAGCCTTCCCCAGCGA
GGAGGCATGGGCTAAGAGCCTCAAGCCTCTTGCCTTGGTGGAGGACTCGC
GGCTCTACGCGGCATGGAGTGCGTATCAGGTGACGAAGGACTTGAAGGAT
TTGAAGGAGACTCTTCGTTTGATTACGCCGGCGGAACAGTAAATGTCTCT
CTCGCGACCGACTGAAGTCATGCAGGTAAAACGCCTCTCGCAGCACGCCG
TCCTTCCTGTGCGTGGCTCGGAATGGGCAGCCGGTTATGATCTGGCAAGC
GCTGAAGACACGGTGGTCCCCGCCGGTGGGAAGGCGCTCGTCAAGACCGA
CCTCTCCATCGCCATTCCCGAGAACACCTACGCTCGCATCGCCCCTCGCT
CGGGCCTTGCGTGGAAGAAGCACATAGACGTAGGTGCGGGTGTGGTGGAT
TATGATTACCGCGGACCCGTGGGTGTAGTTCTCTTCAATCACGGCCAGGA
GGACTTTCCCGTTGTCAAGGGCGATCGTGTGGCCCAGCTAATCTTGGAAA
AGATCTGTATGGCGCGTGTGGAGGAGGTGACGGAGCTTTCGGAGACGAAG
AGGGGAGCAGGGGGCTTTGGGAGTACCGGAATGCAGGGACAGCAGGCGCA
GCAGCAGCAAAAGGGAGAGCAGGAGGGGAAGAGGATGAAAGTAGAGGAAG
TGGAAGTTCCGGGGCAAAAGGGCGCGCAGCTACTGGTGATGCTGAAGGAG
GTTGCTGAAGCCTTCCCCAGCGAGGAGGCATGGGCTAAGAGCCTCAAGCC
TCTTGCCTTGGTGGAGGACTCGCGGCTCTACGCGGCATGGAGTGCGTATC
AGGTGACGAAGGACTTGAAGGATTTGAAGGAGACTCTTCGTTTGATTACG
CCGGCGGAACAGTAAATGTCTCTCTCGCGACCGACTGAAGTCATGCAGGT
AAAACGCCTCTCGCAGCACGCCGTCCTTCCTGTGCGTGGCTCGGAATGGG
CAGCCGGTTATGATCTGGCAAGCGCTGAAGACACGGTGGTCCCCGCCGGT
GGGAAGGCGCTCGTCAAGACCGACCTCTCCATCGCCATTCCCGAGAACAC
CTACGCTCGCATCGCCCCTCGCTCGGGCCTTGCGTGGAAGAAGCACATAG
ACGTAGGTGCGGGTGTGGTGGATTATGATTACCGCGGACCCGTGGGTGTA
GTTCTCTTCAATCACGGCCAGGAGGACTTTCCCGTTGTCAAGGGCGATCG
TGTGGCCCAGCTAATCTTGGAAAAGATCTGTATGGCGCGTGTGGAGGAGG
TGACGGAGCTTTCGGAGACGAAGAGGGGAGCAGGGGGCTTTGGGAGTACC
GGAATGCAGGGACAGCAGGCGCAGCAGCAGCAAAAGGGAGAGCAGGAGGG
GAAGAGGATGAAAGTAGAGGAAGTGGAAGTTCCGGGGCAAAAGGGCGCGC
AGCTACTGGTGATGCTGAAGGAGGTTGCTGAAGCCTTCCCCAGCGAGGAG
GCATGGGCTAAGAGCCTCAAGCCTCTTGCCTTGGTGGAGGACTCGCGGCT
CTACGCGGCATGGAGTGCGTATCAGGTGACGAAGGACTTGAAGGATTTGA
AGGAGACTCTTCGTTTGATTACGCCGGCGGAACAGTAA

Synonyms

Publications