jgi.p|Nanoce1779_2|601334, mRNA_8254 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601334
Unique NamemRNA_8254
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length742
Alignment locationscaffold_23:202202..202943 -

Link to JBrowse

Properties
Property NameValue
TranscriptId601420
TrackFilteredModels2
ProteinId601334
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:202202..202943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601334gene_8254Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601334mRNA_8254-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8254CDS_8254Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8254 ID=mRNA_8254|Name=jgi.p|Nanoce1779_2|601334|organism=Nannochloropsis oceanica|type=mRNA|length=742bp
AATTTGATTTCAGAGCAAATTCACAACTCTTATACAAAGGGATCACTTCG
GGCATCCTTTGCACGGCGACGGAGGATAAAGAGGCACTGGCTGAGTCCTG
ACATGTACCCAGAAACGACGAAACTAACCTCCTCTCCCCCTTTTTTCCTT
TTCCCCACTGTTCTCATCCCCTGCCTCAGCCTCTTCCACGCGCACCCTCA
CGAAGGCAGTCGCAAACCAATGGAGTCGTCCTCCTCTCTTCCTCCACCAC
CAAGCGAGACCGACCTCGACCGCCTCGGCCGTGACCTTTCTGCATGCGTC
CTAGAACAATACGTCTTCACCGTCGTAGGCATCGGGCTAGGCACTGGTCT
CGGCGTCTATCGCAGGAGCCTCTTGCCCCTTGTTGCCTTCGGTGCCGTGG
GCAGCTTGGGTGACTTAGCCTATGGGTTAGGTTGGGCATGTAAAGGAAAA
TTTGATGCGTACAAGGCATGTAGGAATCGAGTGCAGCCTCTAATCATACC
ACCACCACGGGTTCCGCCGCCGTTTCCATTACAGTCACAGCCAGACACTT
CCTCCTCATCCTCTTCTCCGCCCCCCACGTCTTTGTCCTCATCATCCACT
TGGTTTAGGGTCTCGTCATCGTCGACTCCGCCGGCGCCGAAAGTAGGAAA
GTCAAGAGCAGAAAAAGATTGAACGAGTTTTTAAAGATTATGCAGCGATT
GTATGGAGAGATCCAAAGCCAAAATTGTACGTGCGCGGATGC
back to top

protein sequence of jgi.p|Nanoce1779_2|601334

>mRNA_8254-protein ID=mRNA_8254-protein|Name=jgi.p|Nanoce1779_2|601334|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MYPETTKLTSSPPFFLFPTVLIPCLSLFHAHPHEGSRKPMESSSSLPPPP
SETDLDRLGRDLSACVLEQYVFTVVGIGLGTGLGVYRRSLLPLVAFGAVG
SLGDLAYGLGWACKGKFDAYKACRNRVQPLIIPPPRVPPPFPLQSQPDTS
SSSSSPPPTSLSSSSTWFRVSSSSTPPAPKVGKSRAEKD*
back to top

mRNA from alignment at scaffold_23:202202..202943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8254 ID=mRNA_8254|Name=jgi.p|Nanoce1779_2|601334|organism=Nannochloropsis oceanica|type=mRNA|length=742bp|location=Sequence derived from alignment at scaffold_23:202202..202943- (Nannochloropsis oceanica)
AATTTGATTTCAGAGCAAATTCACAACTCTTATACAAAGGGATCACTTCG
GGCATCCTTTGCACGGCGACGGAGGATAAAGAGGCACTGGCTGAGTCCTG
ACATGTACCCAGAAACGACGAAACTAACCTCCTCTCCCCCTTTTTTCCTT
TTCCCCACTGTTCTCATCCCCTGCCTCAGCCTCTTCCACGCGCACCCTCA
CGAAGGCAGTCGCAAACCAATGGAGTCGTCCTCCTCTCTTCCTCCACCAC
CAAGCGAGACCGACCTCGACCGCCTCGGCCGTGACCTTTCTGCATGCGTC
CTAGAACAATACGTCTTCACCGTCGTAGGCATCGGGCTAGGCACTGGTCT
CGGCGTCTATCGCAGGAGCCTCTTGCCCCTTGTTGCCTTCGGTGCCGTGG
GCAGCTTGGGTGACTTAGCCTATGGGTTAGGTTGGGCATGTAAAGGAAAA
TTTGATGCGTACAAGGCATGTAGGAATCGAGTGCAGCCTCTAATCATACC
ACCACCACGGGTTCCGCCGCCGTTTCCATTACAGTCACAGCCAGACACTT
CCTCCTCATCCTCTTCTCCGCCCCCCACGTCTTTGTCCTCATCATCCACT
TGGTTTAGGGTCTCGTCATCGTCGACTCCGCCGGCGCCGAAAGTAGGAAA
GTCAAGAGCAGAAAAAGATTGAACGAGTTTTTAAAGATTATGCAGCGATT
GTATGGAGAGATCCAAAGCCAAAATTGTACGTGCGCGGATGC
back to top

Coding sequence (CDS) from alignment at scaffold_23:202202..202943-

>mRNA_8254 ID=mRNA_8254|Name=jgi.p|Nanoce1779_2|601334|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_23:202202..202943- (Nannochloropsis oceanica)
ATGTACCCAGAAACGACGAAACTAACCTCCTCTCCCCCTTTTTTCCTTTT
CCCCACTGTTCTCATCCCCTGCCTCAGCCTCTTCCACGCGCACCCTCACG
AAGGCAGTCGCAAACCAATGGAGTCGTCCTCCTCTCTTCCTCCACCACCA
AGCGAGACCGACCTCGACCGCCTCGGCCGTGACCTTTCTGCATGCGTCCT
AGAACAATACGTCTTCACCGTCGTAGGCATCGGGCTAGGCACTGGTCTCG
GCGTCTATCGCAGGAGCCTCTTGCCCCTTGTTGCCTTCGGTGCCGTGGGC
AGCTTGGGTGACTTAGCCTATGGGTTAGGTTGGGCATGTAAAGGAAAATT
TGATGCGTACAAGGCATGTAGGAATCGAGTGCAGCCTCTAATCATACCAC
CACCACGGGTTCCGCCGCCGTTTCCATTACAGTCACAGCCAGACACTTCC
TCCTCATCCTCTTCTCCGCCCCCCACGTCTTTGTCCTCATCATCCACTTG
GTTTAGGGTCTCGTCATCGTCGACTCCGCCGGCGCCGAAAGTAGGAAAGT
CAAGAGCAGAAAAAGATTGA
back to top
Synonyms
Publications