jgi.p|Nanoce1779_2|601332, mRNA_8253 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601332
Unique NamemRNA_8253
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length851
Alignment locationscaffold_23:201351..202201 -

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Properties
Property NameValue
TranscriptId601418
TrackFilteredModels2
ProteinId601332
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:201351..202201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601332gene_8253Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601332mRNA_8253-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8253CDS_8253Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8253 ID=mRNA_8253|Name=jgi.p|Nanoce1779_2|601332|organism=Nannochloropsis oceanica|type=mRNA|length=851bp
TTGGCACTGTATCAGAAGTGTCGTTTACTTCTCGTTCTCTTCGTTGCTAC
GGGTTTGGTGTAGTCCTGACCTTCCATGGTCGCTGTGAGTGTGTTCGAGA
TGGTGCGTCCCCTCTTGGCCCTTCCTCAACACTGGGTCTCGCCCTTCCTT
CTCCCTCGAACACACAGCCTCAGCACTTTTATTGTCATTCTCTGTCCCTT
CTGTCTTTTCAAGGTGATGTCATTCTCCCGCCCGGGGCAAGAGTGCTCCT
CCCTACTTTCCCCTATCTTTCCGCCTGGGATTCCTCATTCTTTCTCCTCC
CTCTTTCCTTCCCTCCCCCTCTCCATTCCTGAACTGTCATTTGTTGAAAT
TTGGACACATGCACACACCTTCCTTTTTACTCTCATCAACAAATTTCCAT
TTTCTGCACCTCGGCGATTGATTTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGATACTGGTGTCGTAGACCCGATACACACCCACCTCCCTTTCGCCC
CCGTCCTTATCTTTGTCTTTCATCCTCACATCCTCTGTTTTACAATCCGC
CTTGATACGGATGGTCGTTGTTGCCGCTGCGGCTCCCACTGCTCTTTTTC
TCCTTTTAAATAAGCATTGTCTTCTGGTATCCATATGCATATATGCACGC
CCTTTATCCTTCCCCCGACTCCCCCTCCTACCCCTCTCCTTGTCCACCAT
GTCATTGAAGCATTCTTCGGCTATTCTTCCGATTCCCCATTCCTCTTGTC
CCTCCCTCCTCCTCCTCCTGTTCCTCCTCAATCTCCACTTTCTGCTTCTT
ATCTTCCTCTACCACCACTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTG
T
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protein sequence of jgi.p|Nanoce1779_2|601332

>mRNA_8253-protein ID=mRNA_8253-protein|Name=jgi.p|Nanoce1779_2|601332|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MVAVSVFEMVRPLLALPQHWVSPFLLPRTHSLSTFIVILCPFCLFKVMSF
SRPGQECSSLLSPIFPPGIPHSFSSLFPSLPLSIPELSFVEIWTHAHTFL
FTLINKFPFSAPRRLICCCCCCCCCC*
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mRNA from alignment at scaffold_23:201351..202201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8253 ID=mRNA_8253|Name=jgi.p|Nanoce1779_2|601332|organism=Nannochloropsis oceanica|type=mRNA|length=851bp|location=Sequence derived from alignment at scaffold_23:201351..202201- (Nannochloropsis oceanica)
TTGGCACTGTATCAGAAGTGTCGTTTACTTCTCGTTCTCTTCGTTGCTAC
GGGTTTGGTGTAGTCCTGACCTTCCATGGTCGCTGTGAGTGTGTTCGAGA
TGGTGCGTCCCCTCTTGGCCCTTCCTCAACACTGGGTCTCGCCCTTCCTT
CTCCCTCGAACACACAGCCTCAGCACTTTTATTGTCATTCTCTGTCCCTT
CTGTCTTTTCAAGGTGATGTCATTCTCCCGCCCGGGGCAAGAGTGCTCCT
CCCTACTTTCCCCTATCTTTCCGCCTGGGATTCCTCATTCTTTCTCCTCC
CTCTTTCCTTCCCTCCCCCTCTCCATTCCTGAACTGTCATTTGTTGAAAT
TTGGACACATGCACACACCTTCCTTTTTACTCTCATCAACAAATTTCCAT
TTTCTGCACCTCGGCGATTGATTTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGATACTGGTGTCGTAGACCCGATACACACCCACCTCCCTTTCGCCC
CCGTCCTTATCTTTGTCTTTCATCCTCACATCCTCTGTTTTACAATCCGC
CTTGATACGGATGGTCGTTGTTGCCGCTGCGGCTCCCACTGCTCTTTTTC
TCCTTTTAAATAAGCATTGTCTTCTGGTATCCATATGCATATATGCACGC
CCTTTATCCTTCCCCCGACTCCCCCTCCTACCCCTCTCCTTGTCCACCAT
GTCATTGAAGCATTCTTCGGCTATTCTTCCGATTCCCCATTCCTCTTGTC
CCTCCCTCCTCCTCCTCCTGTTCCTCCTCAATCTCCACTTTCTGCTTCTT
ATCTTCCTCTACCACCACTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTG
T
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Coding sequence (CDS) from alignment at scaffold_23:201351..202201-

>mRNA_8253 ID=mRNA_8253|Name=jgi.p|Nanoce1779_2|601332|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_23:201351..202201- (Nannochloropsis oceanica)
ATGGTCGCTGTGAGTGTGTTCGAGATGGTGCGTCCCCTCTTGGCCCTTCC
TCAACACTGGGTCTCGCCCTTCCTTCTCCCTCGAACACACAGCCTCAGCA
CTTTTATTGTCATTCTCTGTCCCTTCTGTCTTTTCAAGGTGATGTCATTC
TCCCGCCCGGGGCAAGAGTGCTCCTCCCTACTTTCCCCTATCTTTCCGCC
TGGGATTCCTCATTCTTTCTCCTCCCTCTTTCCTTCCCTCCCCCTCTCCA
TTCCTGAACTGTCATTTGTTGAAATTTGGACACATGCACACACCTTCCTT
TTTACTCTCATCAACAAATTTCCATTTTCTGCACCTCGGCGATTGATTTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGA
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Synonyms
Publications