jgi.p|Nanoce1779_2|532306, mRNA_8252 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532306
Unique Name	mRNA_8252
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1050
Alignment location	scaffold_23:196400..198100 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	532392
Track	FilteredModels2
ProteinId	532306

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:196400..198100 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532306	gene_8252	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532306	mRNA_8252-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8252	CDS_8252	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:196400..198100+
coding sequence from alignment at scaffold_23:196400..198100+

mRNA sequence

>mRNA_8252 ID=mRNA_8252|Name=jgi.p|Nanoce1779_2|532306|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
ATGGCCGAGGCATGGAGAAGGGACTATTTCCAAAAGCTTAGAGAGGCTAG
GGAGGGAGAGCAAAGCGAGGGTGTATCTGCGGGAAAGGAAGGAGGGAGGG
AGGTAGGGGAGGAAGGAAAGGAGGAACCGACAGAGGAAGAGGTGGAGAGG
GAGTTTTGGCGTTTGGTAGGGGGAGGGGAGGCGGCCAGGGGTAAAGAAGA
GGGGAGCAAGAAAGGAGAGGGAGGTAAGGAGGCAGGGAAGGGTCGCAGCC
GCGCCCCGAGGGAAGTCAAGGTTGAATACGGCAGTGAAATAGACACAGGC
GTCTATGGCTCCGCCTTCCCTTTATCAGCATCCCTGCGTCCCTCCTCCTC
CTCTTCCTCCTCCCCCTCCTTCTCGGTGCGCTACGCACGGAGCGGGTGGA
ACATCAACAATCTGCCGGTGGCCACGGGAAGCATGCTCCACCACCTGGAC
GTGCCTGTCACGGGCGTGGTGGTCCCATGGCTCTACGTAGGTATGGCTAT
GTCGGCCTTCTGCTGGCACGCCGAAGACCACTACCTATACTCGATCAATT
ACTTGCACCTGGGGAAGGGTGCCAAACAATGGTATGGCCTGCCGGGGAGG
ATGGGGGAGGCGTTTGAGGCGGCAGTTAAGGAAGCGTTTCCGGAGCTGTT
GGAGAGGAACCCCGACCTAATGCTGCAGCTGGTGACAATGATAGACCCGA
AGTGGATCGCGGACCGGGGCATTCCAGTGTACACGACGAAGCAGAGGGCA
GGGGAATTCGTCATCACCTTCCCTCAAGCCTACCACGCGGGTTTTAACCA
CAATTTCAATGTCGCCGAGGCCGTTAATTTTGCGCCTCCAGATTTCCTCC
CTTGGGGAGGCAAGGCACAAGAGCTCTACCGGAAATTGAGGCGGGCGCCG
GTGTTCTCACAGGACCAGCTGGTGGTAGCAGCAGCTGCTGCCCTCCTCCA
CAAGCCCCCCAAGGAAACCTCCGAATGCCTCGTGTACGTTCTTGCAGAGC
TCAAGAGAATGGAGAAAGAAACAAGGAGGAGGAGGACCCAGGTGGAGAGA

protein sequence of jgi.p|Nanoce1779_2|532306

>mRNA_8252-protein ID=mRNA_8252-protein|Name=jgi.p|Nanoce1779_2|532306|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MAEAWRRDYFQKLREAREGEQSEGVSAGKEGGREVGEEGKEEPTEEEVER
EFWRLVGGGEAARGKEEGSKKGEGGKEAGKGRSRAPREVKVEYGSEIDTG
VYGSAFPLSASLRPSSSSSSSPSFSVRYARSGWNINNLPVATGSMLHHLD
VPVTGVVVPWLYVGMAMSAFCWHAEDHYLYSINYLHLGKGAKQWYGLPGR
MGEAFEAAVKEAFPELLERNPDLMLQLVTMIDPKWIADRGIPVYTTKQRA
GEFVITFPQAYHAGFNHNFNVAEAVNFAPPDFLPWGGKAQELYRKLRRAP
VFSQDQLVVAAAAALLHKPPKETSECLVYVLAELKRMEKETRRRRTQVER

mRNA from alignment at scaffold_23:196400..198100+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8252 ID=mRNA_8252|Name=jgi.p|Nanoce1779_2|532306|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp|location=Sequence derived from alignment at scaffold_23:196400..198100+ (Nannochloropsis oceanica)
ATGGCCGAGGCATGGAGAAGGGACTATTTCCAAAAGCTTAGAGAGGCTAG
GGAGGGAGAGCAAAGCGAGGGTGTATCTGCGGGAAAGGAAGGAGGGAGGG
AGGTAGGGGAGGAAGGAAAGGAGGAACCGACAGAGGAAGAGGTGGAGAGG
GAGTTTTGGCGTTTGGTAGGGGGAGGGGAGGCGGCCAGGGGTAAAGAAGA
GGGGAGCAAGAAAGGAGAGGGAGGTAAGGAGGCAGGGAAGGGTCGCAGCC
GCGCCCCGAGGGAAGTCAAGGTTGAATACGGCAGTGAAATAGACACAGGC
GTCTATGGCTCCGCCTTCCCTTTATCAGCATCCCTGCGTCCCTCCTCCTC
CTCTTCCTCCTCCCCCTCCTTCTCGGTGCGCTACGCACGGAGCGGGTGGA
ACATCAACAATCTGCCGGTGGCCACGGGAAGCATGCTCCACCACCTGGAC
GTGCCTGTCACGGGCGTGGTGGTCCCATGGCTCTACGTAGGTATGGCTAT
GTCGGCCTTCTGCTGGCACGCCGAAGACCACTACCTATACTCGATCAATT
ACTTGCACCTGGGGAAGGGTGCCAAACAATGGTATGGCCTGCCGGGGAGG
ATGGGGGAGGCGTTTGAGGCGGCAGTTAAGGAAGCGTTTCCGGAGCTGTT
GGAGAGGAACCCCGACCTAATGCTGCAGCTGGTGACAATGATAGACCCGA
AGTGGATCGCGGACCGGGGCATTCCAGTGTACACGACGAAGCAGAGGGCA
GGTACGACGAAGGAGAAGAAAGAGGGGGAGGAGGAGGAGGGAGGGGGGAA
AGTTTATTCGGGGGGGAGAAAGGGGAGATGAAAGGAGTGAGAGGGAGTGA
CGGAGGGGATGGTAGGTGGGAGTACAGGCTTTCATGAAGCAGCTGGTAAT
GATGATTGAATCGAAGTGGATTGCGGCGAAAAGGATCCCTGTTAGTACGA
CACAGCAGAGGAAAGAGATAAGCAATTGTATTGTGTGATTTTCATTTATA
TTTACATTTAAAATTGAGGATCAATTGGTTATTGATAAAATCATAAAATA
ATATACCAATTCAATTATTGATTTATTTATTTAAACACCTATAAACAGGG
GAATTCGTCATCACCTTCCCTCAAGCCTACCACGCGGGTTTTAACCACAA
TTTCAATGTCGCCGAGGCCGTTAATTTTGCGCCTCCAGATTTCCTCCCTT
GGGGAGGCAAGGCACAAGAGCTCTACCGGAAATTGAGGCGGGCGCCGGTG
TTCTCACAGGTATGTCAACTATTTTTATATATACATATATATATAATTAT
ATTTATACTATTCTTATCTATATATAATGTATAATATGTATAATTATATA
TATATATTATTCTTATATATGTGTATTATATGTATATATAATTATTTATA
TATATACATATACATAATTACATGTATATGATTTTTTTTTTAATGCGATC
ATGGATAATTGTGCTCTGATGGCTCGTCGACAACCTCGGGGTTCAAAATA
GGACCATTAATCAATAAATAAGTACTATACTATTAAATAATGAACGTTAA
CCACGCCTCACAGGACCAGCTGGTGGTAGCAGCAGCTGCTGCCCTCCTCC
ACAAGCCCCCCAAGGAAACCTCCGAATGCCTCGTGTACGTTCTTGCAGAG
CTCAAGAGAATGGAGAAAGAAACAAGGAGGAGGAGGACCCAGGTGGAGAG
A

Coding sequence (CDS) from alignment at scaffold_23:196400..198100+

>mRNA_8252 ID=mRNA_8252|Name=jgi.p|Nanoce1779_2|532306|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_23:196400..198100+ (Nannochloropsis oceanica)
ATGGCCGAGGCATGGAGAAGGGACTATTTCCAAAAGCTTAGAGAGGCTAG
GGAGGGAGAGCAAAGCGAGGGTGTATCTGCGGGAAAGGAAGGAGGGAGGG
AGGTAGGGGAGGAAGGAAAGGAGGAACCGACAGAGGAAGAGGTGGAGAGG
GAGTTTTGGCGTTTGGTAGGGGGAGGGGAGGCGGCCAGGGGTAAAGAAGA
GGGGAGCAAGAAAGGAGAGGGAGGTAAGGAGGCAGGGAAGGGTCGCAGCC
GCGCCCCGAGGGAAGTCAAGGTTGAATACGGCAGTGAAATAGACACAGGC
GTCTATGGCTCCGCCTTCCCTTTATCAGCATCCCTGCGTCCCTCCTCCTC
CTCTTCCTCCTCCCCCTCCTTCTCGGTGCGCTACGCACGGAGCGGGTGGA
ACATCAACAATCTGCCGGTGGCCACGGGAAGCATGCTCCACCACCTGGAC
GTGCCTGTCACGGGCGTGGTGGTCCCATGGCTCTACGTAGGTATGGCTAT
GTCGGCCTTCTGCTGGCACGCCGAAGACCACTACCTATACTCGATCAATT
ACTTGCACCTGGGGAAGGGTGCCAAACAATGGTATGGCCTGCCGGGGAGG
ATGGGGGAGGCGTTTGAGGCGGCAGTTAAGGAAGCGTTTCCGGAGCTGTT
GGAGAGGAACCCCGACCTAATGCTGCAGCTGGTGACAATGATAGACCCGA
AGTGGATCGCGGACCGGGGCATTCCAGTGTACACGACGAAGCAGAGGGCA
GGGGAATTCGTCATCACCTTCCCTCAAGCCTACCACGCGGGTTTTAACCA
CAATTTCAATGTCGCCGAGGCCGTTAATTTTGCGCCTCCAGATTTCCTCC
CTTGGGGAGGCAAGGCACAAGAGCTCTACCGGAAATTGAGGCGGGCGCCG
GTGTTCTCACAGGACCAGCTGGTGGTAGCAGCAGCTGCTGCCCTCCTCCA
CAAGCCCCCCAAGGAAACCTCCGAATGCCTCGTGTACGTTCTTGCAGAGC
TCAAGAGAATGGAGAAAGAAACAAGGAGGAGGAGGACCCAGGTGGAGAGA
ATGGCCGAGGCATGGAGAAGGGACTATTTCCAAAAGCTTAGAGAGGCTAG
GGAGGGAGAGCAAAGCGAGGGTGTATCTGCGGGAAAGGAAGGAGGGAGGG
AGGTAGGGGAGGAAGGAAAGGAGGAACCGACAGAGGAAGAGGTGGAGAGG
GAGTTTTGGCGTTTGGTAGGGGGAGGGGAGGCGGCCAGGGGTAAAGAAGA
GGGGAGCAAGAAAGGAGAGGGAGGTAAGGAGGCAGGGAAGGGTCGCAGCC
GCGCCCCGAGGGAAGTCAAGGTTGAATACGGCAGTGAAATAGACACAGGC
GTCTATGGCTCCGCCTTCCCTTTATCAGCATCCCTGCGTCCCTCCTCCTC
CTCTTCCTCCTCCCCCTCCTTCTCGGTGCGCTACGCACGGAGCGGGTGGA
ACATCAACAATCTGCCGGTGGCCACGGGAAGCATGCTCCACCACCTGGAC
GTGCCTGTCACGGGCGTGGTGGTCCCATGGCTCTACGTAGGTATGGCTAT
GTCGGCCTTCTGCTGGCACGCCGAAGACCACTACCTATACTCGATCAATT
ACTTGCACCTGGGGAAGGGTGCCAAACAATGGTATGGCCTGCCGGGGAGG
ATGGGGGAGGCGTTTGAGGCGGCAGTTAAGGAAGCGTTTCCGGAGCTGTT
GGAGAGGAACCCCGACCTAATGCTGCAGCTGGTGACAATGATAGACCCGA
AGTGGATCGCGGACCGGGGCATTCCAGTGTACACGACGAAGCAGAGGGCA
GGGGAATTCGTCATCACCTTCCCTCAAGCCTACCACGCGGGTTTTAACCA
CAATTTCAATGTCGCCGAGGCCGTTAATTTTGCGCCTCCAGATTTCCTCC
CTTGGGGAGGCAAGGCACAAGAGCTCTACCGGAAATTGAGGCGGGCGCCG
GTGTTCTCACAGGACCAGCTGGTGGTAGCAGCAGCTGCTGCCCTCCTCCA
CAAGCCCCCCAAGGAAACCTCCGAATGCCTCGTGTACGTTCTTGCAGAGC
TCAAGAGAATGGAGAAAGAAACAAGGAGGAGGAGGACCCAGGTGGAGAGA
ATGGCCGAGGCATGGAGAAGGGACTATTTCCAAAAGCTTAGAGAGGCTAG
GGAGGGAGAGCAAAGCGAGGGTGTATCTGCGGGAAAGGAAGGAGGGAGGG
AGGTAGGGGAGGAAGGAAAGGAGGAACCGACAGAGGAAGAGGTGGAGAGG
GAGTTTTGGCGTTTGGTAGGGGGAGGGGAGGCGGCCAGGGGTAAAGAAGA
GGGGAGCAAGAAAGGAGAGGGAGGTAAGGAGGCAGGGAAGGGTCGCAGCC
GCGCCCCGAGGGAAGTCAAGGTTGAATACGGCAGTGAAATAGACACAGGC
GTCTATGGCTCCGCCTTCCCTTTATCAGCATCCCTGCGTCCCTCCTCCTC
CTCTTCCTCCTCCCCCTCCTTCTCGGTGCGCTACGCACGGAGCGGGTGGA
ACATCAACAATCTGCCGGTGGCCACGGGAAGCATGCTCCACCACCTGGAC
GTGCCTGTCACGGGCGTGGTGGTCCCATGGCTCTACGTAGGTATGGCTAT
GTCGGCCTTCTGCTGGCACGCCGAAGACCACTACCTATACTCGATCAATT
ACTTGCACCTGGGGAAGGGTGCCAAACAATGGTATGGCCTGCCGGGGAGG
ATGGGGGAGGCGTTTGAGGCGGCAGTTAAGGAAGCGTTTCCGGAGCTGTT
GGAGAGGAACCCCGACCTAATGCTGCAGCTGGTGACAATGATAGACCCGA
AGTGGATCGCGGACCGGGGCATTCCAGTGTACACGACGAAGCAGAGGGCA
GGGGAATTCGTCATCACCTTCCCTCAAGCCTACCACGCGGGTTTTAACCA
CAATTTCAATGTCGCCGAGGCCGTTAATTTTGCGCCTCCAGATTTCCTCC
CTTGGGGAGGCAAGGCACAAGAGCTCTACCGGAAATTGAGGCGGGCGCCG
GTGTTCTCACAGGACCAGCTGGTGGTAGCAGCAGCTGCTGCCCTCCTCCA
CAAGCCCCCCAAGGAAACCTCCGAATGCCTCGTGTACGTTCTTGCAGAGC
TCAAGAGAATGGAGAAAGAAACAAGGAGGAGGAGGACCCAGGTGGAGAGA

Synonyms

Publications